Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.35534 * 125.67653 * 265.45287 * 3 2 1 5 5 C 1.35450 * 108.87078 * 180.12895 * 4 3 2 6 6 C 1.39830 * 107.86370 * 359.62638 * 5 4 3 7 7 C 1.37646 * 125.67833 * 85.16490 * 3 2 1 8 8 C 1.46671 * 126.23632 * 0.03785 * 7 3 2 9 9 O 1.21697 * 119.99956 * 354.68450 * 8 7 3 10 10 N 1.34781 * 120.00446 * 174.68518 * 8 7 3 11 11 C 1.46503 * 120.00266 * 185.01450 * 10 8 7 12 12 C 1.53000 * 109.46823 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47198 * 65.00148 * 12 11 10 14 14 N 1.46500 * 109.47001 * 304.99804 * 12 11 10 15 15 C 1.36944 * 119.99604 * 155.00379 * 14 12 11 16 16 H 1.08004 * 119.99960 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99880 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99986 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99974 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47105 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47292 * 120.00171 * 19 17 15 22 22 H 1.48507 * 109.47159 * 240.00111 * 19 17 15 23 23 C 1.53006 * 109.46653 * 184.99821 * 12 11 10 24 24 C 1.52998 * 117.49909 * 248.74615 * 23 12 11 25 25 C 1.53000 * 117.49702 * 180.08457 * 23 12 11 26 26 H 1.09002 * 109.46984 * 60.00131 * 1 2 3 27 27 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46677 * 300.00187 * 1 2 3 29 29 H 1.09000 * 109.47328 * 239.99501 * 2 1 3 30 30 H 1.09002 * 109.46984 * 119.99869 * 2 1 3 31 31 H 1.07998 * 125.56280 * 359.97438 * 4 3 2 32 32 H 1.08005 * 126.06330 * 179.89392 * 5 4 3 33 33 H 1.08007 * 126.45296 * 180.20963 * 6 5 4 34 34 H 0.97005 * 119.99747 * 5.01363 * 10 8 7 35 35 H 1.08994 * 109.46887 * 300.00024 * 11 10 8 36 36 H 1.08997 * 109.46658 * 59.99981 * 11 10 8 37 37 H 0.96993 * 120.00450 * 335.00400 * 14 12 11 38 38 H 0.96999 * 119.99895 * 180.02562 * 18 17 15 39 39 H 1.09000 * 115.54894 * 34.42266 * 23 12 11 40 40 H 1.08997 * 117.49734 * 0.02562 * 24 23 12 41 41 H 1.09001 * 117.49772 * 145.02262 * 24 23 12 42 42 H 1.08998 * 117.49989 * 214.98052 * 25 23 12 43 43 H 1.09006 * 117.49476 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7698 3.3292 -0.7069 6 6 2.6675 3.3928 0.6862 7 6 2.1971 2.1695 1.1141 8 6 1.9353 1.7791 2.5035 9 8 1.4287 0.6998 2.7471 10 7 2.2557 2.6157 3.5105 11 6 2.0966 2.1831 4.9011 12 6 2.5271 3.3127 5.8390 13 1 1.8514 4.1599 5.7214 14 7 3.8928 3.7276 5.5089 15 6 4.3168 4.9931 5.8157 16 1 3.6443 5.6853 6.3006 17 6 5.6106 5.3865 5.5026 18 7 6.4300 4.5432 4.9112 19 14 6.1889 7.1129 5.9204 20 1 5.0853 7.8594 6.5761 21 1 7.3511 7.0363 6.8415 22 1 6.5897 7.8157 4.6751 23 6 2.4796 2.8195 7.2866 24 6 1.4078 3.4156 8.2012 25 6 2.8757 3.8097 8.3836 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3252 1.7427 -2.1169 32 1 3.1078 4.1230 -1.3566 33 1 2.9115 4.2404 1.3096 34 1 2.5917 3.5044 3.3144 35 1 1.0516 1.9352 5.0871 36 1 2.7161 1.3046 5.0813 37 1 4.4966 3.1061 5.0731 38 1 7.3342 4.8180 4.6927 39 1 2.7424 1.7721 7.4352 40 1 0.7362 4.1589 7.7716 41 1 0.9656 2.7606 8.9519 42 1 3.3986 3.4138 9.2542 43 1 3.1705 4.8124 8.0739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752500183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = 27.458035 kcal Electronic energy + Delta-G solvation = -23382.247790 eV Core-core repulsion = 20042.575251 eV Total energy + Delta-G solvation = -3339.672540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31851 -40.19843 -38.89251 -36.16554 -35.35732 -34.77779 -32.76763 -30.79054 -30.20687 -29.11323 -25.69623 -24.59636 -24.23470 -23.02878 -22.75604 -21.37904 -21.26035 -20.32848 -19.25655 -18.67837 -17.06163 -16.87844 -16.65443 -16.40784 -15.95000 -15.72427 -15.48807 -15.09327 -14.99707 -14.87660 -14.57330 -14.36260 -13.70366 -13.41503 -13.18115 -13.08517 -12.97306 -12.91655 -12.81276 -12.68205 -12.38736 -12.25312 -12.10235 -11.94056 -11.71731 -11.12776 -10.99616 -10.86041 -10.75302 -10.08364 -9.66300 -9.11774 -8.98158 -7.86661 -5.14423 0.51820 1.49953 1.51890 1.59704 1.72507 1.86592 2.39588 2.49453 2.59889 3.08987 3.50235 3.77754 3.83232 3.85865 4.00564 4.14076 4.18306 4.19483 4.35220 4.39936 4.40215 4.47786 4.50640 4.57082 4.66858 4.79290 4.85714 4.89645 4.91263 5.15050 5.17051 5.19143 5.20744 5.32544 5.41409 5.46727 5.51947 5.63734 5.85536 6.03678 6.32715 6.40247 6.58425 7.19705 7.41094 8.11579 8.37279 9.36356 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014542 B = 0.004658 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.060197 B = 6010.362159 C = 7579.743063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.413 5.413 4 C 0.028 3.972 5 C -0.223 4.223 6 C -0.147 4.147 7 C -0.083 4.083 8 C 0.581 3.419 9 O -0.584 6.584 10 N -0.702 5.702 11 C 0.133 3.867 12 C 0.197 3.803 13 H 0.057 0.943 14 N -0.723 5.723 15 C -0.217 4.217 16 H 0.077 0.923 17 C -0.069 4.069 18 N -0.966 5.966 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.302 1.302 22 H -0.298 1.298 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.173 4.173 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.209 0.791 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.410 0.590 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.372 0.628 38 H 0.247 0.753 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 -6.320 -9.234 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 N -0.086 5.086 4 C -0.107 4.107 5 C -0.247 4.247 6 C -0.174 4.174 7 C -0.196 4.196 8 C 0.370 3.630 9 O -0.467 6.467 10 N -0.352 5.352 11 C 0.008 3.992 12 C 0.088 3.912 13 H 0.075 0.925 14 N -0.362 5.362 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.617 5.617 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.230 1.230 22 H -0.225 1.225 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.178 0.822 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.851 -7.269 -8.938 17.259 hybrid contribution 1.365 1.166 0.331 1.825 sum -11.486 -6.103 -8.606 15.597 Atomic orbital electron populations 1.21998 0.93480 1.03771 1.01842 1.22137 0.96477 0.78860 1.05110 1.44273 1.47234 1.12182 1.04949 1.22654 1.03179 0.92281 0.92632 1.21134 1.10252 0.98935 0.94366 1.21625 1.02820 0.95945 0.96967 1.20000 1.17388 0.94292 0.87917 1.17262 0.77639 0.83738 0.84353 1.90708 1.46456 1.23836 1.85732 1.45635 1.65533 1.18383 1.05644 1.21490 1.01144 0.97030 0.79516 1.20153 0.86794 0.94018 0.90248 0.92496 1.42558 1.09918 1.12720 1.71044 1.19488 0.95457 0.89970 1.30010 0.90471 1.25349 0.97230 1.00835 1.02707 1.69817 1.06695 1.36096 1.49137 0.85280 0.77888 0.81121 0.76730 1.19082 1.22962 1.22513 1.22907 1.04910 0.98175 0.93463 1.23034 0.91158 1.03393 1.02345 1.22738 0.98055 1.00368 0.99867 0.91160 0.89013 0.94542 0.85938 0.90410 0.77415 0.82206 0.84455 0.75362 0.90101 0.92919 0.79577 0.94419 0.88756 0.88643 0.87471 0.89524 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.17 71.98 0.73 -2.24 16 2 C 0.09 2.01 6.10 86.38 0.53 2.54 16 3 N -0.41 -10.82 2.76 -511.03 -1.41 -12.23 16 4 C 0.03 0.60 11.37 83.48 0.95 1.55 16 5 C -0.22 -5.55 10.81 22.01 0.24 -5.31 16 6 C -0.15 -4.55 10.35 22.57 0.23 -4.31 16 7 C -0.08 -2.72 6.88 40.35 0.28 -2.44 16 8 C 0.58 21.11 7.77 86.44 0.67 21.78 16 9 O -0.58 -22.79 14.27 -4.34 -0.06 -22.85 16 10 N -0.70 -25.01 5.37 -467.08 -2.51 -27.52 16 11 C 0.13 4.57 5.22 86.38 0.45 5.02 16 12 C 0.20 7.24 2.70 44.99 0.12 7.36 16 13 H 0.06 2.09 7.84 -2.39 -0.02 2.08 16 14 N -0.72 -33.43 4.54 -322.92 -1.47 -34.89 16 15 C -0.22 -11.08 8.63 84.03 0.73 -10.35 16 16 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 17 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 18 N -0.97 -57.27 13.06 21.65 0.28 -56.99 16 19 Si 0.96 44.82 29.55 68.60 2.03 46.84 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 C -0.17 -5.80 5.36 -10.79 -0.06 -5.86 16 24 C -0.16 -4.44 10.18 30.62 0.31 -4.13 16 25 C -0.17 -5.89 9.78 30.62 0.30 -5.60 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 0.95 7.60 -2.39 -0.02 0.93 16 29 H 0.12 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.08 2.08 6.73 -2.39 -0.02 2.06 16 31 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.14 4.34 7.45 -2.91 -0.02 4.32 16 34 H 0.41 15.05 7.04 -92.70 -0.65 14.40 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.37 19.26 7.80 -92.71 -0.72 18.53 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.09 3.10 8.11 -2.39 -0.02 3.08 16 40 H 0.10 2.49 8.05 -2.39 -0.02 2.47 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.08 3.16 6.23 -2.38 -0.01 3.14 16 Total: -1.00 -65.63 356.86 2.45 -63.18 By element: Atomic # 1 Polarization: 50.10 SS G_CDS: -0.36 Total: 49.75 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.95 Total: -5.29 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -5.10 Total: -131.63 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.06 Total: -22.85 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.63 2.45 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752500183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.640 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds