Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99677 * 2 1 4 4 H 1.08001 * 120.00591 * 322.11577 * 3 2 1 5 5 C 1.38813 * 119.99697 * 142.11088 * 3 2 1 6 6 N 1.31619 * 119.99776 * 157.13138 * 5 3 2 7 7 Si 1.86797 * 120.00235 * 337.13897 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.74740 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.74388 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.74920 * 7 5 3 11 11 C 1.46499 * 119.99842 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46594 * 90.00489 * 11 2 1 13 13 H 1.09006 * 110.88923 * 51.11769 * 12 11 2 14 14 C 1.55154 * 111.00341 * 174.99869 * 12 11 2 15 15 C 1.54320 * 102.94587 * 153.57537 * 14 12 11 16 16 N 1.47024 * 107.27155 * 337.80760 * 15 14 12 17 17 C 1.34772 * 125.65330 * 178.96044 * 16 15 14 18 18 O 1.21626 * 120.00134 * 179.97438 * 17 16 15 19 19 C 1.47267 * 119.99575 * 359.97438 * 17 16 15 20 20 C 1.46679 * 126.94599 * 0.02562 * 19 17 16 21 21 C 1.34480 * 106.33457 * 179.97438 * 20 19 17 22 22 N 1.36449 * 108.85901 * 0.02562 * 21 20 19 23 23 C 1.46493 * 124.85470 * 180.02562 * 22 21 20 24 24 C 1.34654 * 110.29177 * 359.72435 * 22 21 20 25 25 C 1.47431 * 108.70089 * 358.93875 * 16 15 14 26 26 H 1.09004 * 109.47354 * 270.37808 * 1 2 3 27 27 H 1.08995 * 109.47059 * 150.37978 * 1 2 3 28 28 H 1.09005 * 109.47218 * 30.37596 * 1 2 3 29 29 H 0.97005 * 120.00322 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46726 * 209.99739 * 11 2 1 31 31 H 1.08988 * 109.47613 * 330.00487 * 11 2 1 32 32 H 1.09004 * 110.72212 * 271.93858 * 14 12 11 33 33 H 1.09003 * 110.71849 * 35.03390 * 14 12 11 34 34 H 1.09002 * 109.88165 * 97.22293 * 15 14 12 35 35 H 1.08995 * 109.88628 * 218.38979 * 15 14 12 36 36 H 1.08006 * 126.83533 * 0.03133 * 20 19 17 37 37 H 1.08000 * 125.57314 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47420 * 89.96466 * 23 22 21 39 39 H 1.09000 * 109.47212 * 209.97210 * 23 22 21 40 40 H 1.09000 * 109.47021 * 329.97127 * 23 22 21 41 41 H 1.08010 * 125.79896 * 180.30956 * 24 22 21 42 42 H 1.08994 * 110.36628 * 265.29215 * 25 16 15 43 43 H 1.09001 * 110.36495 * 142.96784 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7804 2.0227 -0.5743 5 6 3.3183 1.3126 0.7383 6 7 4.2038 2.2316 0.4162 7 14 3.6344 0.1788 2.1888 8 1 4.4741 -0.9646 1.7495 9 1 4.3400 0.9288 3.2588 10 1 2.3404 -0.3293 2.7111 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 2.9025 -0.9049 -2.0216 14 6 3.3347 -2.9865 -1.4847 15 6 2.9278 -3.6435 -2.8204 16 7 1.5947 -3.1317 -3.1704 17 6 0.8971 -3.4499 -4.2787 18 8 -0.2021 -2.9643 -4.4658 19 6 1.4660 -4.3857 -5.2633 20 6 2.7683 -5.0568 -5.1918 21 6 2.8659 -5.8123 -6.3000 22 7 1.7310 -5.6567 -7.0412 23 6 1.4681 -6.3221 -8.3195 24 6 0.8843 -4.8091 -6.4265 25 6 1.1471 -2.2131 -2.1077 26 1 -0.3634 0.0068 1.0277 27 1 -0.3633 -0.8933 -0.5079 28 1 -0.3634 0.8866 -0.5197 29 1 5.0203 2.3205 0.9323 30 1 3.1499 -1.1381 0.5143 31 1 1.6085 -2.0281 0.5146 32 1 4.3926 -2.7238 -1.4907 33 1 3.1063 -3.6418 -0.6441 34 1 3.6434 -3.3763 -3.5981 35 1 2.8904 -4.7266 -2.7046 36 1 3.5025 -4.9635 -4.4051 37 1 3.7054 -6.4397 -6.5607 38 1 0.9698 -7.2744 -8.1378 39 1 0.8284 -5.6887 -8.9341 40 1 2.4106 -6.4985 -8.8379 41 1 -0.0882 -4.5124 -6.7911 42 1 0.5310 -2.7440 -1.3820 43 1 0.5942 -1.3774 -2.5367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753346197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = 54.609360 kcal Electronic energy + Delta-G solvation = -23451.269905 eV Core-core repulsion = 20112.774736 eV Total energy + Delta-G solvation = -3338.495170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36938 -39.42964 -37.34300 -35.45378 -33.12680 -31.85138 -31.14510 -29.30845 -28.98739 -27.31238 -26.35084 -25.14805 -23.53957 -21.34437 -21.11676 -20.41275 -19.88086 -19.09267 -17.32197 -16.74723 -16.08009 -15.87826 -15.62002 -15.01171 -14.97057 -14.33224 -13.92026 -13.70075 -13.41907 -13.29920 -13.06575 -12.93090 -12.71075 -12.59643 -12.51634 -12.15810 -12.14529 -11.92976 -11.67592 -11.30328 -10.84580 -10.75165 -10.68543 -10.18319 -10.17446 -9.81176 -9.61899 -9.47194 -8.76395 -8.56086 -8.47967 -8.21039 -6.76292 -5.96378 -3.36663 1.76251 2.31177 2.60798 3.31253 3.39317 3.48590 3.55040 3.71907 4.38857 4.55071 4.69815 4.73561 4.79280 4.86241 4.93647 4.98788 5.08606 5.28381 5.33607 5.40493 5.42722 5.63360 5.66948 5.78338 5.92252 5.96853 6.09290 6.17035 6.21920 6.33142 6.35690 6.42709 6.58360 6.62595 6.68251 6.78607 6.81113 6.91134 7.01473 7.03847 7.88005 8.09776 8.42712 8.53714 9.03323 9.75129 10.16995 11.19570 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003549 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.595806 B = 7888.684427 C = 8299.834904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.612 5.612 3 C -0.266 4.266 4 H 0.078 0.922 5 C 0.035 3.965 6 N -0.900 5.900 7 Si 0.876 3.124 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.135 4.135 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.602 3.398 18 O -0.559 6.559 19 C -0.224 4.224 20 C -0.176 4.176 21 C -0.023 4.023 22 N -0.450 5.450 23 C 0.070 3.930 24 C 0.070 3.930 25 C 0.120 3.880 26 H 0.007 0.993 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.174 0.826 42 H 0.060 0.940 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -20.288 -14.118 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.336 5.336 3 C -0.395 4.395 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.542 5.542 7 Si 0.706 3.294 8 H -0.213 1.213 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.136 4.136 13 H 0.111 0.889 14 C -0.173 4.173 15 C -0.019 4.019 16 N -0.343 5.343 17 C 0.393 3.607 18 O -0.439 6.439 19 C -0.234 4.234 20 C -0.200 4.200 21 C -0.149 4.149 22 N -0.126 5.126 23 C -0.072 4.072 24 C -0.065 4.065 25 C -0.002 4.002 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.191 0.809 42 H 0.078 0.922 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.033 -20.116 -14.551 24.910 hybrid contribution 0.467 -0.634 0.796 1.120 sum -1.566 -20.750 -13.755 24.944 Atomic orbital electron populations 1.21143 0.84533 0.99091 0.97596 1.44056 1.00808 1.01954 1.86749 1.18805 1.05884 0.90824 1.23999 0.90444 1.25474 0.96861 0.96468 0.97744 1.69890 1.08517 1.36247 1.39516 0.86936 0.77937 0.80039 0.84448 1.21276 1.22994 1.19475 1.21106 0.96541 0.87804 0.92151 1.23100 0.93696 0.96202 1.00587 0.88863 1.22758 1.00940 0.97662 0.95981 1.22282 0.84442 0.97947 0.97279 1.48336 1.18665 1.46153 1.21188 1.17014 0.83775 0.80301 0.79657 1.90756 1.20610 1.55512 1.77000 1.20351 0.97706 1.06928 0.98440 1.22622 0.97472 1.00414 0.99466 1.21785 0.91945 1.06557 0.94656 1.43617 1.14950 1.35677 1.18319 1.22097 1.03484 0.98289 0.83325 1.21754 0.96380 0.94587 0.93821 1.22334 0.97363 0.92225 0.88240 0.97506 0.94955 0.93931 0.92777 0.92358 0.94084 0.90078 0.90934 0.91201 0.91522 0.82678 0.81734 0.90764 0.89638 0.89655 0.80910 0.92157 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.53 10.51 59.85 0.63 3.16 16 2 N -0.61 -14.72 2.44 -181.12 -0.44 -15.16 16 3 C -0.27 -7.51 9.91 -15.06 -0.15 -7.66 16 4 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 5 C 0.03 1.00 5.29 -17.43 -0.09 0.91 16 6 N -0.90 -27.45 13.97 55.49 0.78 -26.68 16 7 Si 0.88 22.07 25.09 -169.99 -4.26 17.80 16 8 H -0.28 -6.81 6.68 56.52 0.38 -6.43 16 9 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.15 3.19 4.02 -4.04 -0.02 3.17 16 12 C -0.11 -2.12 3.26 -88.47 -0.29 -2.41 16 13 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 14 C -0.13 -1.96 6.42 -24.90 -0.16 -2.12 16 15 C 0.10 1.38 4.99 -3.06 -0.02 1.36 16 16 N -0.61 -10.12 3.33 -171.84 -0.57 -10.70 16 17 C 0.60 10.55 7.84 -12.59 -0.10 10.45 16 18 O -0.56 -11.57 17.17 5.25 0.09 -11.48 16 19 C -0.22 -3.17 6.23 -103.35 -0.64 -3.81 16 20 C -0.18 -1.99 9.39 -37.50 -0.35 -2.34 16 21 C -0.02 -0.21 11.34 -16.83 -0.19 -0.40 16 22 N -0.45 -3.99 3.09 -124.53 -0.38 -4.37 16 23 C 0.07 0.30 11.03 59.84 0.66 0.96 16 24 C 0.07 0.81 11.12 -16.84 -0.19 0.63 16 25 C 0.12 2.16 4.99 -2.52 -0.01 2.14 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 28 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.06 1.34 3.36 -51.93 -0.17 1.17 16 31 H 0.04 0.79 7.89 -51.94 -0.41 0.38 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.07 0.87 6.84 -51.93 -0.36 0.51 16 35 H 0.07 0.76 7.01 -51.93 -0.36 0.39 16 36 H 0.16 1.54 4.80 -52.48 -0.25 1.29 16 37 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.29 8.13 -51.93 -0.42 -0.14 16 40 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 41 H 0.17 1.80 8.06 -52.48 -0.42 1.37 16 42 H 0.06 1.05 7.61 -51.93 -0.40 0.65 16 43 H 0.08 1.59 7.90 -51.93 -0.41 1.18 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -35.07 341.51 -7.06 -42.12 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.49 Total: -0.72 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.92 Total: 4.04 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.62 Total: -56.91 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.26 Total: 17.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.07 -7.06 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753346197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.734 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds