Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99677 * 2 1 4 4 H 1.08001 * 120.00591 * 322.11577 * 3 2 1 5 5 C 1.38813 * 119.99697 * 142.11088 * 3 2 1 6 6 N 1.31619 * 119.99776 * 157.13138 * 5 3 2 7 7 Si 1.86797 * 120.00235 * 337.13897 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.74740 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.74388 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.74920 * 7 5 3 11 11 C 1.46499 * 119.99842 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46594 * 90.00489 * 11 2 1 13 13 H 1.09006 * 110.88923 * 51.11769 * 12 11 2 14 14 C 1.55154 * 111.00341 * 174.99869 * 12 11 2 15 15 C 1.54320 * 102.94587 * 153.57537 * 14 12 11 16 16 N 1.47024 * 107.27155 * 337.80760 * 15 14 12 17 17 C 1.34772 * 125.65330 * 178.96044 * 16 15 14 18 18 O 1.21626 * 120.00134 * 179.97438 * 17 16 15 19 19 C 1.47267 * 119.99575 * 359.97438 * 17 16 15 20 20 C 1.46679 * 126.94599 * 0.02562 * 19 17 16 21 21 C 1.34480 * 106.33457 * 179.97438 * 20 19 17 22 22 N 1.36449 * 108.85901 * 0.02562 * 21 20 19 23 23 C 1.46493 * 124.85470 * 180.02562 * 22 21 20 24 24 C 1.34654 * 110.29177 * 359.72435 * 22 21 20 25 25 C 1.47431 * 108.70089 * 358.93875 * 16 15 14 26 26 H 1.09004 * 109.47354 * 270.37808 * 1 2 3 27 27 H 1.08995 * 109.47059 * 150.37978 * 1 2 3 28 28 H 1.09005 * 109.47218 * 30.37596 * 1 2 3 29 29 H 0.97005 * 120.00322 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46726 * 209.99739 * 11 2 1 31 31 H 1.08988 * 109.47613 * 330.00487 * 11 2 1 32 32 H 1.09004 * 110.72212 * 271.93858 * 14 12 11 33 33 H 1.09003 * 110.71849 * 35.03390 * 14 12 11 34 34 H 1.09002 * 109.88165 * 97.22293 * 15 14 12 35 35 H 1.08995 * 109.88628 * 218.38979 * 15 14 12 36 36 H 1.08006 * 126.83533 * 0.03133 * 20 19 17 37 37 H 1.08000 * 125.57314 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47420 * 89.96466 * 23 22 21 39 39 H 1.09000 * 109.47212 * 209.97210 * 23 22 21 40 40 H 1.09000 * 109.47021 * 329.97127 * 23 22 21 41 41 H 1.08010 * 125.79896 * 180.30956 * 24 22 21 42 42 H 1.08994 * 110.36628 * 265.29215 * 25 16 15 43 43 H 1.09001 * 110.36495 * 142.96784 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7804 2.0227 -0.5743 5 6 3.3183 1.3126 0.7383 6 7 4.2038 2.2316 0.4162 7 14 3.6344 0.1788 2.1888 8 1 4.4741 -0.9646 1.7495 9 1 4.3400 0.9288 3.2588 10 1 2.3404 -0.3293 2.7111 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 2.9025 -0.9049 -2.0216 14 6 3.3347 -2.9865 -1.4847 15 6 2.9278 -3.6435 -2.8204 16 7 1.5947 -3.1317 -3.1704 17 6 0.8971 -3.4499 -4.2787 18 8 -0.2021 -2.9643 -4.4658 19 6 1.4660 -4.3857 -5.2633 20 6 2.7683 -5.0568 -5.1918 21 6 2.8659 -5.8123 -6.3000 22 7 1.7310 -5.6567 -7.0412 23 6 1.4681 -6.3221 -8.3195 24 6 0.8843 -4.8091 -6.4265 25 6 1.1471 -2.2131 -2.1077 26 1 -0.3634 0.0068 1.0277 27 1 -0.3633 -0.8933 -0.5079 28 1 -0.3634 0.8866 -0.5197 29 1 5.0203 2.3205 0.9323 30 1 3.1499 -1.1381 0.5143 31 1 1.6085 -2.0281 0.5146 32 1 4.3926 -2.7238 -1.4907 33 1 3.1063 -3.6418 -0.6441 34 1 3.6434 -3.3763 -3.5981 35 1 2.8904 -4.7266 -2.7046 36 1 3.5025 -4.9635 -4.4051 37 1 3.7054 -6.4397 -6.5607 38 1 0.9698 -7.2744 -8.1378 39 1 0.8284 -5.6887 -8.9341 40 1 2.4106 -6.4985 -8.8379 41 1 -0.0882 -4.5124 -6.7911 42 1 0.5310 -2.7440 -1.3820 43 1 0.5942 -1.3774 -2.5367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753346197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = 31.448569 kcal Electronic energy + Delta-G solvation = -23452.274233 eV Core-core repulsion = 20112.774736 eV Total energy + Delta-G solvation = -3339.499497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18083 -40.69560 -38.81722 -37.17746 -34.11649 -33.63880 -32.64810 -30.29676 -30.10204 -28.61884 -27.79589 -26.58980 -24.80799 -22.93125 -22.35033 -21.56400 -21.10946 -20.07753 -18.74794 -18.27941 -17.48694 -17.17582 -16.83337 -16.33333 -15.96781 -15.84776 -15.18206 -15.03232 -14.85145 -14.70211 -14.36320 -14.10080 -13.92598 -13.79793 -13.65539 -13.41682 -13.26633 -13.02788 -13.00172 -12.75527 -12.56593 -12.48117 -12.21505 -11.89946 -11.76550 -11.52371 -11.33206 -10.99148 -10.60646 -9.73649 -9.49296 -9.22074 -8.75519 -8.18528 -5.57299 0.75416 1.32063 1.44910 1.55222 1.56926 1.88846 2.26477 2.44244 2.55800 3.03383 3.39091 3.64572 3.73558 3.98604 4.01831 4.05651 4.08974 4.28371 4.32161 4.44099 4.48534 4.56009 4.63819 4.64603 4.68906 4.75817 4.78084 4.85772 4.88032 4.99379 5.02489 5.05740 5.09429 5.10652 5.23304 5.39482 5.47666 5.77601 5.95808 6.09285 6.16966 6.37948 6.63861 6.99977 7.24409 7.63587 8.06086 9.01775 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003549 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.595806 B = 7888.684427 C = 8299.834904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.625 5.625 3 C -0.265 4.265 4 H 0.032 0.968 5 C -0.019 4.019 6 N -0.949 5.949 7 Si 0.946 3.054 8 H -0.259 1.259 9 H -0.309 1.309 10 H -0.262 1.262 11 C 0.146 3.854 12 C -0.110 4.110 13 H 0.053 0.947 14 C -0.126 4.126 15 C 0.107 3.893 16 N -0.615 5.615 17 C 0.591 3.409 18 O -0.608 6.608 19 C -0.263 4.263 20 C -0.193 4.193 21 C -0.008 4.008 22 N -0.442 5.442 23 C 0.061 3.939 24 C 0.066 3.934 25 C 0.127 3.873 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.205 0.795 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.176 0.824 42 H 0.072 0.928 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -24.579 -14.471 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.350 5.350 3 C -0.394 4.394 4 H 0.050 0.950 5 C -0.216 4.216 6 N -0.593 5.593 7 Si 0.774 3.226 8 H -0.185 1.185 9 H -0.238 1.238 10 H -0.186 1.186 11 C 0.021 3.979 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.164 4.164 15 C -0.015 4.015 16 N -0.347 5.347 17 C 0.385 3.615 18 O -0.492 6.492 19 C -0.274 4.274 20 C -0.216 4.216 21 C -0.135 4.135 22 N -0.116 5.116 23 C -0.079 4.079 24 C -0.071 4.071 25 C 0.005 3.995 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.184 0.816 37 H 0.222 0.778 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.193 0.807 42 H 0.090 0.910 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.915 -24.469 -14.927 28.677 hybrid contribution 0.064 0.711 0.732 1.022 sum -0.851 -23.758 -14.195 27.688 Atomic orbital electron populations 1.21194 0.82844 0.99845 0.98357 1.44180 1.02035 1.01713 1.87048 1.18631 1.06163 0.91517 1.23124 0.95030 1.26108 0.96553 0.98740 1.00169 1.70023 1.09343 1.39045 1.40889 0.85807 0.78342 0.78562 0.79896 1.18521 1.23754 1.18588 1.21229 0.95948 0.87006 0.93698 1.22816 0.94907 0.97107 0.98368 0.92805 1.22783 1.00586 0.95520 0.97540 1.22466 0.82815 0.99429 0.96808 1.48419 1.19821 1.45704 1.20729 1.17662 0.83334 0.80393 0.80129 1.90707 1.22787 1.57589 1.78090 1.20285 0.99876 1.08217 0.98975 1.22780 0.96612 1.01114 1.01134 1.22382 0.92392 1.05318 0.93396 1.43947 1.14155 1.34338 1.19210 1.22455 1.05268 0.98664 0.81487 1.21851 0.96873 0.94887 0.93532 1.22102 0.96843 0.91767 0.88800 0.96363 0.92548 0.95008 0.92702 0.93751 0.91102 0.89090 0.88655 0.90229 0.88507 0.81577 0.77841 0.89246 0.88806 0.87275 0.80688 0.91036 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.09 10.51 127.77 1.34 6.43 16 2 N -0.63 -30.32 2.44 -726.94 -1.77 -32.10 16 3 C -0.26 -15.49 9.91 84.03 0.83 -14.66 16 4 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 5 C -0.02 -1.13 5.29 84.86 0.45 -0.68 16 6 N -0.95 -59.80 13.97 21.65 0.30 -59.50 16 7 Si 0.95 45.50 25.09 68.60 1.72 47.22 16 8 H -0.26 -11.30 6.68 99.48 0.66 -10.63 16 9 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 10 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.15 6.00 4.02 86.38 0.35 6.34 16 12 C -0.11 -4.06 3.26 -9.40 -0.03 -4.09 16 13 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 14 C -0.13 -3.32 6.42 31.78 0.20 -3.12 16 15 C 0.11 2.58 4.99 86.73 0.43 3.01 16 16 N -0.62 -20.18 3.33 -815.83 -2.71 -22.89 16 17 C 0.59 21.10 7.84 86.62 0.68 21.78 16 18 O -0.61 -26.36 17.17 -4.11 -0.07 -26.43 16 19 C -0.26 -7.24 6.23 -19.04 -0.12 -7.36 16 20 C -0.19 -3.86 9.39 23.62 0.22 -3.64 16 21 C -0.01 -0.11 11.34 83.11 0.94 0.83 16 22 N -0.44 -6.49 3.09 -547.91 -1.69 -8.18 16 23 C 0.06 0.30 11.03 127.77 1.41 1.71 16 24 C 0.07 1.47 11.12 83.92 0.93 2.40 16 25 C 0.13 4.60 4.99 86.85 0.43 5.03 16 26 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 2.05 6.40 -2.39 -0.02 2.04 16 28 H 0.03 1.36 8.04 -2.38 -0.02 1.34 16 29 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 30 H 0.04 1.95 3.36 -2.39 -0.01 1.94 16 31 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 34 H 0.08 1.79 6.84 -2.39 -0.02 1.78 16 35 H 0.10 1.82 7.01 -2.39 -0.02 1.81 16 36 H 0.17 2.75 4.80 -2.91 -0.01 2.73 16 37 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.09 0.35 8.13 -2.39 -0.02 0.33 16 40 H 0.11 0.08 8.13 -2.39 -0.02 0.06 16 41 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.07 2.40 7.61 -2.39 -0.02 2.38 16 43 H 0.04 1.90 7.90 -2.39 -0.02 1.88 16 Total: -1.00 -81.04 341.51 4.81 -76.23 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 8.08 Total: 14.00 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.88 Total: -122.67 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.07 Total: -26.43 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.72 Total: 47.22 kcal Total: -81.04 4.81 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753346197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.679 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds