Wall clock time and date at job start Tue Mar 31 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99864 * 2 1 4 4 H 1.07999 * 120.00057 * 154.62339 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.62756 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46501 * 120.00259 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47229 * 89.99516 * 11 2 1 13 13 H 1.08997 * 110.88882 * 302.57279 * 12 11 2 14 14 C 1.55155 * 111.00022 * 178.65134 * 12 11 2 15 15 C 1.54335 * 102.93962 * 206.42662 * 14 12 11 16 16 N 1.47019 * 107.26921 * 22.19177 * 15 14 12 17 17 C 1.34780 * 125.64687 * 181.02161 * 16 15 14 18 18 O 1.21620 * 119.99847 * 180.02562 * 17 16 15 19 19 C 1.47266 * 119.99795 * 0.04495 * 17 16 15 20 20 C 1.46682 * 126.94444 * 359.68509 * 19 17 16 21 21 C 1.34489 * 106.33495 * 179.82913 * 20 19 17 22 22 N 1.36443 * 108.85398 * 0.43390 * 21 20 19 23 23 C 1.46500 * 124.85145 * 179.68851 * 22 21 20 24 24 C 1.34669 * 110.29997 * 359.71469 * 22 21 20 25 25 C 1.47419 * 108.70689 * 1.06226 * 16 15 14 26 26 H 1.09000 * 109.47073 * 84.46793 * 1 2 3 27 27 H 1.08997 * 109.47587 * 324.46410 * 1 2 3 28 28 H 1.08999 * 109.47159 * 204.46337 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.46951 * 209.99992 * 11 2 1 31 31 H 1.09001 * 109.46532 * 329.99964 * 11 2 1 32 32 H 1.08994 * 110.72426 * 324.78585 * 14 12 11 33 33 H 1.08992 * 110.72207 * 88.06697 * 14 12 11 34 34 H 1.08998 * 109.88044 * 262.77601 * 15 14 12 35 35 H 1.08998 * 110.00984 * 141.68451 * 15 14 12 36 36 H 1.08006 * 126.83537 * 0.02562 * 20 19 17 37 37 H 1.07993 * 125.57073 * 180.14784 * 21 20 19 38 38 H 1.09001 * 109.47253 * 270.02126 * 23 22 21 39 39 H 1.08995 * 109.47179 * 30.02875 * 23 22 21 40 40 H 1.09002 * 109.47037 * 150.02660 * 23 22 21 41 41 H 1.07990 * 125.80207 * 179.97438 * 24 22 21 42 42 H 1.08999 * 110.36826 * 217.02883 * 25 16 15 43 43 H 1.09007 * 110.46464 * 94.75213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1515 1.2311 0.4008 5 6 1.5560 2.3301 -0.5151 6 7 0.3083 2.2932 -0.9326 7 14 2.5279 3.9222 -0.6157 8 1 3.2250 3.9948 -1.9248 9 1 1.6026 5.0761 -0.4830 10 1 3.5285 3.9614 0.4809 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8033 -1.9924 14 6 3.2574 -3.0356 -1.4853 15 6 3.9809 -2.9575 -2.8463 16 7 4.0444 -1.5386 -3.2261 17 6 4.5841 -1.0528 -4.3616 18 8 4.5815 0.1450 -4.5721 19 6 5.1766 -1.9725 -5.3474 20 6 5.2673 -3.4331 -5.2474 21 6 5.8770 -3.8521 -6.3705 22 7 6.1739 -2.7667 -7.1422 23 6 6.8485 -2.8225 -8.4414 24 6 5.7589 -1.6367 -6.5386 25 6 3.4208 -0.7352 -2.1590 26 1 -0.3633 0.0991 -1.0229 27 1 -0.3634 0.8362 0.5973 28 1 -0.3633 -0.9354 0.4256 29 1 -0.1064 3.0926 -1.2929 30 1 3.1499 -1.1385 0.5133 31 1 1.6084 -2.0285 0.5130 32 1 3.9771 -3.0760 -0.6678 33 1 2.5874 -3.8947 -1.4536 34 1 3.4218 -3.5173 -3.5960 35 1 4.9888 -3.3628 -2.7567 36 1 4.9120 -4.0498 -4.4350 37 1 6.0996 -4.8792 -6.6187 38 1 7.9263 -2.7524 -8.2945 39 1 6.6095 -3.7646 -8.9347 40 1 6.5116 -1.9920 -9.0617 41 1 5.8676 -0.6355 -6.9286 42 1 2.8690 0.1015 -2.5873 43 1 4.1776 -0.3730 -1.4630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753346198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:47 Heat of formation + Delta-G solvation = 53.697193 kcal Electronic energy + Delta-G solvation = -23569.598244 eV Core-core repulsion = 20231.063519 eV Total energy + Delta-G solvation = -3338.534724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26621 -39.21578 -37.10377 -35.19227 -33.04742 -31.91412 -30.41588 -29.19155 -28.71867 -26.98529 -25.75446 -25.23522 -23.46000 -21.27073 -21.11209 -20.25012 -19.37225 -18.94457 -17.19102 -16.72865 -15.87889 -15.69551 -15.44940 -14.87109 -14.61343 -14.06368 -13.80395 -13.46014 -13.31483 -13.08988 -12.90863 -12.83944 -12.67996 -12.49902 -12.18840 -11.96771 -11.90577 -11.38772 -11.05041 -10.92696 -10.66906 -10.58124 -10.23689 -10.16276 -9.93668 -9.83981 -9.64011 -9.41425 -8.66974 -8.43103 -8.38161 -8.00069 -6.62488 -5.62866 -3.08780 1.89085 2.40188 2.69835 3.50027 3.55820 3.58839 3.61576 3.89533 4.45826 4.60974 4.77637 4.80108 4.93172 5.01345 5.04550 5.05117 5.26769 5.39442 5.47854 5.56993 5.70614 5.78465 5.86808 5.90206 6.04394 6.12860 6.16271 6.35862 6.40141 6.63741 6.65471 6.70473 6.84826 6.90011 6.94784 7.08054 7.11028 7.13536 7.58124 7.87393 7.95680 8.11213 8.53185 8.76138 9.37314 9.98368 10.47856 11.41998 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.004183 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.625341 B = 6692.069988 C = 7741.957995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.605 5.605 3 C -0.252 4.252 4 H 0.067 0.933 5 C 0.009 3.991 6 N -0.908 5.908 7 Si 0.896 3.104 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.164 3.836 12 C -0.116 4.116 13 H 0.074 0.926 14 C -0.133 4.133 15 C 0.103 3.897 16 N -0.613 5.613 17 C 0.597 3.403 18 O -0.552 6.552 19 C -0.221 4.221 20 C -0.177 4.177 21 C -0.025 4.025 22 N -0.451 5.451 23 C 0.070 3.930 24 C 0.067 3.933 25 C 0.131 3.869 26 H 0.023 0.977 27 H 0.052 0.948 28 H -0.010 1.010 29 H 0.251 0.749 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.174 0.826 42 H 0.086 0.914 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.949 -16.591 -11.079 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.328 5.328 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.189 4.189 6 N -0.553 5.553 7 Si 0.726 3.274 8 H -0.210 1.210 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.036 3.964 12 C -0.138 4.138 13 H 0.092 0.908 14 C -0.172 4.172 15 C -0.020 4.020 16 N -0.347 5.347 17 C 0.387 3.613 18 O -0.432 6.432 19 C -0.231 4.231 20 C -0.201 4.201 21 C -0.151 4.151 22 N -0.127 5.127 23 C -0.071 4.071 24 C -0.067 4.067 25 C 0.010 3.990 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.191 0.809 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.014 -15.802 -11.610 22.490 hybrid contribution 0.513 0.810 -0.358 1.023 sum 11.527 -14.992 -11.967 22.379 Atomic orbital electron populations 1.20861 0.82434 0.95197 0.99248 1.43941 1.01964 1.00604 1.86275 1.19130 0.99103 0.86270 1.33649 0.91507 1.25104 0.96443 0.98659 0.98673 1.70073 1.11270 1.27904 1.46071 0.86377 0.79362 0.83350 0.78295 1.21007 1.21810 1.20572 1.20783 0.95875 0.88321 0.91466 1.23161 0.97299 0.92304 1.01051 0.90769 1.22755 0.99288 0.99179 0.95931 1.22233 0.99777 0.83252 0.96762 1.48444 1.58511 1.08135 1.19563 1.17015 0.77569 0.86799 0.79891 1.90794 1.59362 1.15757 1.77239 1.20439 1.11447 0.93560 0.97642 1.22603 1.04908 0.93437 0.99131 1.21757 1.07574 0.91941 0.93835 1.43604 1.45727 1.06286 1.17054 1.22084 0.97876 1.04449 0.82738 1.21770 1.00022 0.91061 0.93886 1.22177 0.94854 0.94496 0.87522 0.95823 0.92975 0.99187 0.93825 0.93671 0.94058 0.90865 0.90720 0.91715 0.91801 0.82759 0.81830 0.90802 0.89743 0.89681 0.80926 0.89514 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.21 8.99 59.85 0.54 4.74 16 2 N -0.61 -15.25 2.88 -181.12 -0.52 -15.78 16 3 C -0.25 -6.99 8.72 -15.06 -0.13 -7.12 16 4 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 5 C 0.01 0.27 5.38 -17.43 -0.09 0.18 16 6 N -0.91 -27.11 10.13 55.49 0.56 -26.54 16 7 Si 0.90 23.04 29.56 -169.99 -5.02 18.02 16 8 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 9 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.16 3.29 5.25 -4.04 -0.02 3.27 16 12 C -0.12 -2.14 3.29 -88.47 -0.29 -2.43 16 13 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 14 C -0.13 -1.80 6.42 -24.89 -0.16 -1.96 16 15 C 0.10 1.42 4.99 -3.06 -0.02 1.40 16 16 N -0.61 -11.38 3.33 -171.84 -0.57 -11.95 16 17 C 0.60 11.86 7.84 -12.59 -0.10 11.76 16 18 O -0.55 -13.27 17.17 5.26 0.09 -13.18 16 19 C -0.22 -3.46 6.23 -103.35 -0.64 -4.10 16 20 C -0.18 -2.15 9.39 -37.50 -0.35 -2.50 16 21 C -0.02 -0.24 11.34 -16.83 -0.19 -0.43 16 22 N -0.45 -4.46 3.09 -124.53 -0.38 -4.85 16 23 C 0.07 0.37 11.03 59.85 0.66 1.03 16 24 C 0.07 0.89 11.12 -16.84 -0.19 0.70 16 25 C 0.13 2.76 5.36 -2.53 -0.01 2.75 16 26 H 0.02 0.64 7.43 -51.93 -0.39 0.26 16 27 H 0.05 1.42 7.04 -51.93 -0.37 1.06 16 28 H -0.01 -0.23 7.83 -51.93 -0.41 -0.63 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.04 0.89 7.99 -51.93 -0.42 0.47 16 31 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.81 6.86 -51.93 -0.36 0.46 16 35 H 0.06 0.77 6.98 -51.93 -0.36 0.40 16 36 H 0.16 1.61 4.79 -52.48 -0.25 1.36 16 37 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.29 8.13 -51.93 -0.42 -0.14 16 40 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 41 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.09 2.25 8.03 -51.93 -0.42 1.83 16 43 H 0.06 1.40 8.00 -51.92 -0.42 0.98 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -35.30 346.61 -8.33 -43.64 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.71 Total: -1.85 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.00 Total: 7.27 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.92 Total: -59.12 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.30 -8.33 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753346198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.333 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds