Wall clock time and date at job start Tue Mar 31 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99864 * 2 1 4 4 H 1.07999 * 120.00057 * 154.62339 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.62756 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46501 * 120.00259 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47229 * 89.99516 * 11 2 1 13 13 H 1.08997 * 110.88882 * 302.57279 * 12 11 2 14 14 C 1.55155 * 111.00022 * 178.65134 * 12 11 2 15 15 C 1.54335 * 102.93962 * 206.42662 * 14 12 11 16 16 N 1.47019 * 107.26921 * 22.19177 * 15 14 12 17 17 C 1.34780 * 125.64687 * 181.02161 * 16 15 14 18 18 O 1.21620 * 119.99847 * 180.02562 * 17 16 15 19 19 C 1.47266 * 119.99795 * 0.04495 * 17 16 15 20 20 C 1.46682 * 126.94444 * 359.68509 * 19 17 16 21 21 C 1.34489 * 106.33495 * 179.82913 * 20 19 17 22 22 N 1.36443 * 108.85398 * 0.43390 * 21 20 19 23 23 C 1.46500 * 124.85145 * 179.68851 * 22 21 20 24 24 C 1.34669 * 110.29997 * 359.71469 * 22 21 20 25 25 C 1.47419 * 108.70689 * 1.06226 * 16 15 14 26 26 H 1.09000 * 109.47073 * 84.46793 * 1 2 3 27 27 H 1.08997 * 109.47587 * 324.46410 * 1 2 3 28 28 H 1.08999 * 109.47159 * 204.46337 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.46951 * 209.99992 * 11 2 1 31 31 H 1.09001 * 109.46532 * 329.99964 * 11 2 1 32 32 H 1.08994 * 110.72426 * 324.78585 * 14 12 11 33 33 H 1.08992 * 110.72207 * 88.06697 * 14 12 11 34 34 H 1.08998 * 109.88044 * 262.77601 * 15 14 12 35 35 H 1.08998 * 110.00984 * 141.68451 * 15 14 12 36 36 H 1.08006 * 126.83537 * 0.02562 * 20 19 17 37 37 H 1.07993 * 125.57073 * 180.14784 * 21 20 19 38 38 H 1.09001 * 109.47253 * 270.02126 * 23 22 21 39 39 H 1.08995 * 109.47179 * 30.02875 * 23 22 21 40 40 H 1.09002 * 109.47037 * 150.02660 * 23 22 21 41 41 H 1.07990 * 125.80207 * 179.97438 * 24 22 21 42 42 H 1.08999 * 110.36826 * 217.02883 * 25 16 15 43 43 H 1.09007 * 110.46464 * 94.75213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1515 1.2311 0.4008 5 6 1.5560 2.3301 -0.5151 6 7 0.3083 2.2932 -0.9326 7 14 2.5279 3.9222 -0.6157 8 1 3.2250 3.9948 -1.9248 9 1 1.6026 5.0761 -0.4830 10 1 3.5285 3.9614 0.4809 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8033 -1.9924 14 6 3.2574 -3.0356 -1.4853 15 6 3.9809 -2.9575 -2.8463 16 7 4.0444 -1.5386 -3.2261 17 6 4.5841 -1.0528 -4.3616 18 8 4.5815 0.1450 -4.5721 19 6 5.1766 -1.9725 -5.3474 20 6 5.2673 -3.4331 -5.2474 21 6 5.8770 -3.8521 -6.3705 22 7 6.1739 -2.7667 -7.1422 23 6 6.8485 -2.8225 -8.4414 24 6 5.7589 -1.6367 -6.5386 25 6 3.4208 -0.7352 -2.1590 26 1 -0.3633 0.0991 -1.0229 27 1 -0.3634 0.8362 0.5973 28 1 -0.3633 -0.9354 0.4256 29 1 -0.1064 3.0926 -1.2929 30 1 3.1499 -1.1385 0.5133 31 1 1.6084 -2.0285 0.5130 32 1 3.9771 -3.0760 -0.6678 33 1 2.5874 -3.8947 -1.4536 34 1 3.4218 -3.5173 -3.5960 35 1 4.9888 -3.3628 -2.7567 36 1 4.9120 -4.0498 -4.4350 37 1 6.0996 -4.8792 -6.6187 38 1 7.9263 -2.7524 -8.2945 39 1 6.6095 -3.7646 -8.9347 40 1 6.5116 -1.9920 -9.0617 41 1 5.8676 -0.6355 -6.9286 42 1 2.8690 0.1015 -2.5873 43 1 4.1776 -0.3730 -1.4630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753346198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:46 Heat of formation + Delta-G solvation = 30.556409 kcal Electronic energy + Delta-G solvation = -23570.601703 eV Core-core repulsion = 20231.063519 eV Total energy + Delta-G solvation = -3339.538184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18163 -40.62160 -38.69763 -37.06503 -34.17034 -33.45499 -32.14438 -30.17045 -30.06974 -28.08702 -27.87855 -26.59497 -24.87630 -22.97246 -22.28532 -21.24245 -20.92249 -20.06201 -18.83024 -18.23555 -17.20901 -17.13202 -16.69830 -16.32242 -15.93878 -15.60176 -15.14502 -14.96558 -14.72065 -14.65683 -14.25841 -14.01566 -13.75358 -13.65589 -13.32842 -13.21413 -13.03020 -12.95373 -12.91743 -12.67390 -12.60041 -12.22483 -12.05722 -12.03365 -11.68406 -11.54157 -11.37545 -10.96632 -10.59725 -9.72105 -9.48489 -9.21947 -8.71116 -7.83826 -5.28488 0.74297 1.37479 1.45664 1.47496 1.55676 1.89762 2.30613 2.48423 2.55814 3.32809 3.56546 3.80321 3.92028 4.00701 4.05267 4.07927 4.16385 4.31369 4.39705 4.47345 4.52231 4.65960 4.74514 4.77229 4.80099 4.88511 4.96649 4.99682 5.03152 5.06752 5.10090 5.15794 5.33326 5.44889 5.47607 5.56385 5.66182 5.76674 5.83992 6.07823 6.37301 6.38575 6.70429 7.20405 7.27847 7.92803 8.34491 9.19921 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.004183 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.625341 B = 6692.069988 C = 7741.957995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.622 5.622 3 C -0.244 4.244 4 H 0.068 0.932 5 C -0.047 4.047 6 N -0.936 5.936 7 Si 0.947 3.053 8 H -0.303 1.303 9 H -0.289 1.289 10 H -0.263 1.263 11 C 0.161 3.839 12 C -0.108 4.108 13 H 0.055 0.945 14 C -0.115 4.115 15 C 0.100 3.900 16 N -0.617 5.617 17 C 0.583 3.417 18 O -0.617 6.617 19 C -0.261 4.261 20 C -0.191 4.191 21 C -0.005 4.005 22 N -0.442 5.442 23 C 0.061 3.939 24 C 0.060 3.940 25 C 0.138 3.862 26 H -0.007 1.007 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.244 0.756 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.172 0.828 37 H 0.210 0.790 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.021 0.979 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 -20.986 -11.538 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.345 5.345 3 C -0.375 4.375 4 H 0.086 0.914 5 C -0.242 4.242 6 N -0.584 5.584 7 Si 0.777 3.223 8 H -0.231 1.231 9 H -0.215 1.215 10 H -0.187 1.187 11 C 0.034 3.966 12 C -0.130 4.130 13 H 0.074 0.926 14 C -0.153 4.153 15 C -0.022 4.022 16 N -0.349 5.349 17 C 0.376 3.624 18 O -0.502 6.502 19 C -0.271 4.271 20 C -0.213 4.213 21 C -0.132 4.132 22 N -0.116 5.116 23 C -0.079 4.079 24 C -0.077 4.077 25 C 0.015 3.985 26 H 0.011 0.989 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.189 0.811 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.187 0.813 42 H 0.040 0.960 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.929 -20.285 -12.053 26.905 hybrid contribution 0.013 2.073 -0.292 2.093 sum 12.942 -18.212 -12.345 25.526 Atomic orbital electron populations 1.20569 0.82715 0.95937 0.97140 1.44198 1.02229 1.01797 1.86313 1.19377 0.98832 0.87410 1.31866 0.91412 1.25719 0.97319 1.01433 0.99696 1.70228 1.12387 1.27972 1.47817 0.85554 0.78485 0.80764 0.77540 1.23135 1.21531 1.18740 1.21011 0.96150 0.86772 0.92632 1.22916 0.96449 0.94613 0.99012 0.92634 1.22762 0.99268 0.96942 0.96324 1.22576 1.01873 0.80342 0.97382 1.48546 1.57625 1.10013 1.18669 1.17861 0.77039 0.86799 0.80686 1.90732 1.62084 1.18679 1.78698 1.20294 1.13934 0.95004 0.97898 1.22787 1.06202 0.91347 1.01009 1.22440 1.04889 0.93452 0.92371 1.43940 1.44300 1.05228 1.18123 1.22460 0.98372 1.06344 0.80685 1.21785 0.99975 0.92225 0.93716 1.21844 0.94607 0.94080 0.87978 0.98909 0.95849 0.95186 0.94647 0.92937 0.90806 0.89015 0.87079 0.89794 0.89001 0.81077 0.77330 0.89291 0.86907 0.89078 0.81330 0.96010 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.27 8.99 127.77 1.15 10.42 16 2 N -0.62 -31.71 2.88 -726.94 -2.09 -33.80 16 3 C -0.24 -13.94 8.72 84.03 0.73 -13.20 16 4 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 5 C -0.05 -2.82 5.38 84.86 0.46 -2.36 16 6 N -0.94 -58.72 10.13 21.65 0.22 -58.50 16 7 Si 0.95 49.51 29.56 68.60 2.03 51.54 16 8 H -0.30 -16.70 7.11 99.48 0.71 -16.00 16 9 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 10 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 11 C 0.16 6.20 5.25 86.38 0.45 6.65 16 12 C -0.11 -3.90 3.29 -9.40 -0.03 -3.93 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.11 -2.67 6.42 31.79 0.20 -2.47 16 15 C 0.10 2.47 4.99 86.73 0.43 2.90 16 16 N -0.62 -23.40 3.33 -815.82 -2.71 -26.11 16 17 C 0.58 24.40 7.84 86.62 0.68 25.07 16 18 O -0.62 -32.37 17.17 -4.09 -0.07 -32.44 16 19 C -0.26 -8.15 6.23 -19.04 -0.12 -8.27 16 20 C -0.19 -4.06 9.39 23.62 0.22 -3.84 16 21 C 0.00 -0.07 11.34 83.12 0.94 0.87 16 22 N -0.44 -7.41 3.09 -547.91 -1.69 -9.10 16 23 C 0.06 0.41 11.03 127.77 1.41 1.82 16 24 C 0.06 1.57 11.12 83.91 0.93 2.50 16 25 C 0.14 6.11 5.36 86.86 0.47 6.58 16 26 H -0.01 -0.43 7.43 -2.39 -0.02 -0.44 16 27 H 0.02 1.29 7.04 -2.39 -0.02 1.28 16 28 H 0.03 1.27 7.83 -2.39 -0.02 1.25 16 29 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.05 1.96 7.99 -2.39 -0.02 1.94 16 31 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 32 H 0.09 1.87 8.04 -2.39 -0.02 1.85 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.80 6.86 -2.39 -0.02 1.79 16 35 H 0.09 1.83 6.98 -2.39 -0.02 1.81 16 36 H 0.17 2.86 4.79 -2.91 -0.01 2.84 16 37 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 39 H 0.11 0.19 8.13 -2.39 -0.02 0.17 16 40 H 0.09 0.54 8.13 -2.39 -0.02 0.52 16 41 H 0.17 4.33 8.06 -2.92 -0.02 4.31 16 42 H 0.02 1.22 8.03 -2.39 -0.02 1.20 16 43 H 0.05 2.27 8.00 -2.38 -0.02 2.25 16 Total: -1.00 -85.68 346.61 4.60 -81.08 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 0.99 Total: 4.58 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.93 Total: 22.75 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.28 Total: -127.51 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.07 Total: -32.44 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.54 kcal Total: -85.68 4.60 -81.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753346198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.636 kcal (2) G-P(sol) polarization free energy of solvation -85.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds