Wall clock time and date at job start Tue Mar 31 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47147 * 239.99597 * 3 2 1 5 5 H 1.48501 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47045 * 119.99592 * 3 2 1 7 7 C 1.38947 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99982 * 160.13448 * 7 2 1 9 9 N 1.37090 * 120.00166 * 340.13461 * 7 2 1 10 10 C 1.34783 * 119.99746 * 305.28314 * 9 7 2 11 11 O 1.21292 * 119.99752 * 183.83399 * 10 9 7 12 12 C 1.50698 * 120.00024 * 3.84251 * 10 9 7 13 13 H 1.08998 * 109.47025 * 59.69668 * 12 10 9 14 14 C 1.53004 * 109.46884 * 299.69925 * 12 10 9 15 15 C 1.52999 * 109.46694 * 240.00075 * 14 12 10 16 16 C 1.53005 * 109.47232 * 60.00203 * 15 14 12 17 17 C 1.52991 * 109.46926 * 299.99738 * 16 15 14 18 18 C 1.52997 * 109.46921 * 179.69968 * 12 10 9 19 19 C 1.53000 * 109.47237 * 179.97438 * 18 12 10 20 20 C 1.52994 * 109.47050 * 300.00309 * 19 18 12 21 21 C 1.46498 * 120.00261 * 125.29120 * 9 7 2 22 22 C 1.54263 * 110.03517 * 57.16166 * 21 9 7 23 23 C 1.54885 * 104.19838 * 217.11057 * 22 21 9 24 24 C 1.54886 * 102.74892 * 37.94088 * 23 22 21 25 25 C 1.53882 * 110.02949 * 299.99706 * 21 9 7 26 26 H 0.96998 * 119.99957 * 5.07518 * 1 2 3 27 27 H 1.09000 * 109.47111 * 359.97438 * 14 12 10 28 28 H 1.08992 * 109.46800 * 120.00212 * 14 12 10 29 29 H 1.09006 * 109.47018 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46944 * 59.99593 * 16 15 14 31 31 H 1.08998 * 109.46617 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47332 * 240.00057 * 17 16 15 33 33 H 1.09004 * 109.47260 * 120.00363 * 17 16 15 34 34 H 1.09000 * 109.47474 * 299.99958 * 18 12 10 35 35 H 1.08993 * 109.47603 * 180.02562 * 19 18 12 36 36 H 1.09001 * 109.47116 * 59.99845 * 19 18 12 37 37 H 1.09005 * 109.47127 * 239.99643 * 20 19 18 38 38 H 1.09005 * 109.47473 * 119.99948 * 20 19 18 39 39 H 1.08993 * 110.01699 * 178.61051 * 21 9 7 40 40 H 1.08999 * 110.48539 * 335.78940 * 22 21 9 41 41 H 1.09005 * 110.48479 * 98.43038 * 22 21 9 42 42 H 1.08999 * 110.75453 * 279.62846 * 23 22 21 43 43 H 1.08991 * 110.91880 * 156.33239 * 23 22 21 44 44 H 1.09008 * 110.49038 * 203.38131 * 24 23 22 45 45 H 1.08996 * 110.60178 * 80.79290 * 24 23 22 46 46 H 1.08993 * 110.03218 * 238.57204 * 25 21 9 47 47 H 1.08999 * 110.03011 * 359.95133 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0407 -1.2313 -0.3173 9 7 1.3847 -2.3551 0.4045 10 6 0.7917 -2.4117 1.6135 11 8 0.3002 -3.4512 1.9998 12 6 0.7392 -1.1837 2.4853 13 1 0.2057 -0.3897 1.9628 14 6 2.1631 -0.7202 2.7996 15 6 2.3841 -0.7424 4.3134 16 6 2.1838 -2.1660 4.8373 17 6 0.7600 -2.6294 4.5230 18 6 0.0111 -1.5149 3.7895 19 6 -0.0417 -0.2682 4.6750 20 6 1.3823 0.1947 4.9892 21 6 1.3623 -3.5243 -0.4779 22 6 2.8027 -3.9378 -0.8440 23 6 2.7032 -4.3941 -2.3207 24 6 1.6923 -3.3866 -2.9224 25 6 0.6562 -3.1738 -1.7995 26 1 -0.4850 0.8367 -0.0743 27 1 2.8773 -1.3886 2.3187 28 1 2.3057 0.2939 2.4265 29 1 3.3987 -0.4126 4.5374 30 1 2.8980 -2.8341 4.3559 31 1 2.3417 -2.1818 5.9157 32 1 0.2412 -2.8653 5.4521 33 1 0.7979 -3.5177 3.8924 34 1 -1.0033 -1.8451 3.5657 35 1 -0.5600 -0.5042 5.6043 36 1 -0.5750 0.5261 4.1527 37 1 1.5399 0.1786 6.0677 38 1 1.5254 1.2089 4.6163 39 1 0.8486 -4.3515 0.0119 40 1 3.4786 -3.0877 -0.7520 41 1 3.1355 -4.7611 -0.2119 42 1 2.3190 -5.4120 -2.3855 43 1 3.6697 -4.3153 -2.8183 44 1 1.2147 -3.8075 -3.8073 45 1 2.1872 -2.4469 -3.1678 46 1 -0.1995 -3.8315 -1.9514 47 1 0.3296 -2.1341 -1.7839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336817841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:20 Heat of formation + Delta-G solvation = -57.059479 kcal Electronic energy + Delta-G solvation = -26163.723838 eV Core-core repulsion = 22923.926687 eV Total energy + Delta-G solvation = -3239.797151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 291.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23822 -38.28478 -36.30459 -34.24481 -31.50091 -30.58374 -30.20050 -30.03488 -27.90187 -26.84600 -24.83757 -22.50686 -21.92632 -21.29944 -20.09281 -19.43653 -19.17258 -16.75322 -15.90327 -15.82027 -15.66205 -15.03612 -14.97323 -14.59973 -14.46632 -13.92543 -13.29643 -12.93854 -12.59190 -12.28056 -12.04427 -11.67124 -11.58785 -11.53595 -11.48004 -11.38021 -11.25729 -11.16349 -10.76192 -10.75177 -10.57237 -10.45978 -10.44022 -10.37333 -10.28480 -9.89134 -9.85974 -9.60255 -9.43239 -9.23331 -9.08195 -8.57264 -7.87328 -7.13801 -6.38653 -4.17609 3.10706 3.18608 3.20465 4.05541 4.26387 4.83268 4.88661 5.19721 5.30032 5.34548 5.39151 5.44351 5.61599 5.83318 5.91809 6.01659 6.02708 6.03937 6.12828 6.16539 6.20658 6.23418 6.27315 6.30293 6.34858 6.35872 6.42063 6.47329 6.49006 6.55247 6.58923 6.66449 6.77810 6.81401 6.84362 6.96765 6.99577 7.01935 7.16927 7.22357 7.24985 7.32646 7.40083 7.45832 7.56342 8.10808 8.69615 8.97336 9.70104 10.13215 10.65682 Molecular weight = 291.19amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.007784 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.952868 B = 3596.462022 C = 4514.579340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.325 4.325 8 H 0.079 0.921 9 N -0.450 5.450 10 C 0.522 3.478 11 O -0.611 6.611 12 C -0.094 4.094 13 H 0.122 0.878 14 C -0.086 4.086 15 C -0.092 4.092 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.111 4.111 20 C -0.109 4.109 21 C 0.134 3.866 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.126 4.126 26 H 0.271 0.729 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -0.390 2.783 4.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.453 4.453 8 H 0.096 0.904 9 N -0.169 5.169 10 C 0.313 3.687 11 O -0.497 6.497 12 C -0.115 4.115 13 H 0.139 0.861 14 C -0.123 4.123 15 C -0.111 4.111 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.084 4.084 19 C -0.149 4.149 20 C -0.146 4.146 21 C 0.030 3.970 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.164 4.164 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.267 -0.771 3.001 4.502 hybrid contribution 0.325 1.073 -0.226 1.144 sum 3.592 0.303 2.775 4.550 Atomic orbital electron populations 1.69890 1.06100 1.28035 1.45178 1.25484 0.94980 0.99551 0.94996 0.86595 0.79945 0.82075 0.79306 1.19925 1.20885 1.18883 1.18969 0.95420 0.83758 1.47166 0.90363 1.43370 1.50810 1.10750 1.11981 1.20397 0.78283 0.88504 0.81471 1.90393 1.52247 1.33115 1.73964 1.21373 0.97185 0.98907 0.94010 0.86085 1.21435 0.96771 1.01584 0.92549 1.21144 0.97692 0.95170 0.97075 1.21487 0.97943 0.96114 0.98922 1.21755 0.94325 1.00480 0.99371 1.20775 0.99125 0.93980 0.94479 1.21529 0.96304 0.98082 0.98974 1.21485 0.95497 0.98596 0.99057 1.21531 0.94150 0.90393 0.90930 1.22635 0.98684 1.00376 0.94906 1.22417 0.98612 0.98459 0.96411 1.22259 0.97024 0.98750 0.97355 1.22394 0.96631 1.03570 0.93800 0.91884 0.91225 0.92324 0.92318 0.92770 0.93453 0.94032 0.88830 0.91848 0.92899 0.92524 0.93018 0.92672 0.90641 0.90581 0.93020 0.92454 0.92573 0.93213 0.91757 0.93724 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.38 11.23 55.50 0.62 -20.75 16 2 C 0.06 1.31 3.17 -17.47 -0.06 1.26 16 3 Si 0.89 18.62 27.87 -169.99 -4.74 13.88 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.34 6.39 56.52 0.36 -4.98 16 7 C -0.33 -7.66 5.52 -14.94 -0.08 -7.74 16 8 H 0.08 1.84 6.75 -52.48 -0.35 1.48 16 9 N -0.45 -10.71 2.31 -106.54 -0.25 -10.96 16 10 C 0.52 12.91 6.11 -10.98 -0.07 12.84 16 11 O -0.61 -16.15 13.00 5.55 0.07 -16.08 16 12 C -0.09 -2.09 1.67 -91.77 -0.15 -2.24 16 13 H 0.12 2.94 4.90 -51.93 -0.25 2.69 16 14 C -0.09 -1.74 3.77 -26.73 -0.10 -1.84 16 15 C -0.09 -1.60 3.19 -90.66 -0.29 -1.89 16 16 C -0.11 -1.84 5.71 -26.73 -0.15 -1.99 16 17 C -0.12 -2.33 5.39 -26.74 -0.14 -2.47 16 18 C -0.06 -1.30 2.37 -90.62 -0.21 -1.51 16 19 C -0.11 -1.89 5.71 -26.73 -0.15 -2.05 16 20 C -0.11 -1.74 5.70 -26.78 -0.15 -1.89 16 21 C 0.13 2.93 3.30 -66.81 -0.22 2.70 16 22 C -0.13 -2.38 6.41 -25.08 -0.16 -2.54 16 23 C -0.12 -1.92 6.91 -24.74 -0.17 -2.09 16 24 C -0.12 -1.99 6.83 -25.08 -0.17 -2.16 16 25 C -0.13 -2.58 6.28 -25.61 -0.16 -2.74 16 26 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 27 H 0.07 1.50 6.69 -51.93 -0.35 1.16 16 28 H 0.06 1.22 5.00 -51.93 -0.26 0.96 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 2.05 5.50 -51.93 -0.29 1.77 16 34 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 40 H 0.08 1.49 6.35 -51.93 -0.33 1.16 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 2.20 7.37 -51.93 -0.38 1.82 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -25.66 332.96 -9.81 -35.47 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.09 Total: 9.78 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.45 Total: -16.35 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.38 Total: -31.71 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.07 Total: -16.08 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.74 Total: 13.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.66 -9.81 -35.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336817841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.591 kcal (2) G-P(sol) polarization free energy of solvation -25.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds