Wall clock time and date at job start Tue Mar 31 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47147 * 239.99597 * 3 2 1 5 5 H 1.48501 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47045 * 119.99592 * 3 2 1 7 7 C 1.38947 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99982 * 160.13448 * 7 2 1 9 9 N 1.37090 * 120.00166 * 340.13461 * 7 2 1 10 10 C 1.34783 * 119.99746 * 305.28314 * 9 7 2 11 11 O 1.21292 * 119.99752 * 183.83399 * 10 9 7 12 12 C 1.50698 * 120.00024 * 3.84251 * 10 9 7 13 13 H 1.08998 * 109.47025 * 59.69668 * 12 10 9 14 14 C 1.53004 * 109.46884 * 299.69925 * 12 10 9 15 15 C 1.52999 * 109.46694 * 240.00075 * 14 12 10 16 16 C 1.53005 * 109.47232 * 60.00203 * 15 14 12 17 17 C 1.52991 * 109.46926 * 299.99738 * 16 15 14 18 18 C 1.52997 * 109.46921 * 179.69968 * 12 10 9 19 19 C 1.53000 * 109.47237 * 179.97438 * 18 12 10 20 20 C 1.52994 * 109.47050 * 300.00309 * 19 18 12 21 21 C 1.46498 * 120.00261 * 125.29120 * 9 7 2 22 22 C 1.54263 * 110.03517 * 57.16166 * 21 9 7 23 23 C 1.54885 * 104.19838 * 217.11057 * 22 21 9 24 24 C 1.54886 * 102.74892 * 37.94088 * 23 22 21 25 25 C 1.53882 * 110.02949 * 299.99706 * 21 9 7 26 26 H 0.96998 * 119.99957 * 5.07518 * 1 2 3 27 27 H 1.09000 * 109.47111 * 359.97438 * 14 12 10 28 28 H 1.08992 * 109.46800 * 120.00212 * 14 12 10 29 29 H 1.09006 * 109.47018 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46944 * 59.99593 * 16 15 14 31 31 H 1.08998 * 109.46617 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47332 * 240.00057 * 17 16 15 33 33 H 1.09004 * 109.47260 * 120.00363 * 17 16 15 34 34 H 1.09000 * 109.47474 * 299.99958 * 18 12 10 35 35 H 1.08993 * 109.47603 * 180.02562 * 19 18 12 36 36 H 1.09001 * 109.47116 * 59.99845 * 19 18 12 37 37 H 1.09005 * 109.47127 * 239.99643 * 20 19 18 38 38 H 1.09005 * 109.47473 * 119.99948 * 20 19 18 39 39 H 1.08993 * 110.01699 * 178.61051 * 21 9 7 40 40 H 1.08999 * 110.48539 * 335.78940 * 22 21 9 41 41 H 1.09005 * 110.48479 * 98.43038 * 22 21 9 42 42 H 1.08999 * 110.75453 * 279.62846 * 23 22 21 43 43 H 1.08991 * 110.91880 * 156.33239 * 23 22 21 44 44 H 1.09008 * 110.49038 * 203.38131 * 24 23 22 45 45 H 1.08996 * 110.60178 * 80.79290 * 24 23 22 46 46 H 1.08993 * 110.03218 * 238.57204 * 25 21 9 47 47 H 1.08999 * 110.03011 * 359.95133 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0407 -1.2313 -0.3173 9 7 1.3847 -2.3551 0.4045 10 6 0.7917 -2.4117 1.6135 11 8 0.3002 -3.4512 1.9998 12 6 0.7392 -1.1837 2.4853 13 1 0.2057 -0.3897 1.9628 14 6 2.1631 -0.7202 2.7996 15 6 2.3841 -0.7424 4.3134 16 6 2.1838 -2.1660 4.8373 17 6 0.7600 -2.6294 4.5230 18 6 0.0111 -1.5149 3.7895 19 6 -0.0417 -0.2682 4.6750 20 6 1.3823 0.1947 4.9892 21 6 1.3623 -3.5243 -0.4779 22 6 2.8027 -3.9378 -0.8440 23 6 2.7032 -4.3941 -2.3207 24 6 1.6923 -3.3866 -2.9224 25 6 0.6562 -3.1738 -1.7995 26 1 -0.4850 0.8367 -0.0743 27 1 2.8773 -1.3886 2.3187 28 1 2.3057 0.2939 2.4265 29 1 3.3987 -0.4126 4.5374 30 1 2.8980 -2.8341 4.3559 31 1 2.3417 -2.1818 5.9157 32 1 0.2412 -2.8653 5.4521 33 1 0.7979 -3.5177 3.8924 34 1 -1.0033 -1.8451 3.5657 35 1 -0.5600 -0.5042 5.6043 36 1 -0.5750 0.5261 4.1527 37 1 1.5399 0.1786 6.0677 38 1 1.5254 1.2089 4.6163 39 1 0.8486 -4.3515 0.0119 40 1 3.4786 -3.0877 -0.7520 41 1 3.1355 -4.7611 -0.2119 42 1 2.3190 -5.4120 -2.3855 43 1 3.6697 -4.3153 -2.8183 44 1 1.2147 -3.8075 -3.8073 45 1 2.1872 -2.4469 -3.1678 46 1 -0.1995 -3.8315 -1.9514 47 1 0.3296 -2.1341 -1.7839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336817841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:20 Heat of formation + Delta-G solvation = -68.173415 kcal Electronic energy + Delta-G solvation = -26164.205774 eV Core-core repulsion = 22923.926687 eV Total energy + Delta-G solvation = -3240.279087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 291.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87807 -39.93284 -38.01518 -36.07621 -33.30788 -32.09860 -31.70487 -31.55779 -29.45339 -28.48241 -26.69597 -24.13183 -23.31632 -22.82471 -21.59885 -21.11656 -20.92130 -18.50297 -17.59351 -17.38761 -17.30723 -16.75424 -16.43641 -16.28979 -15.98144 -15.56891 -15.05072 -14.52073 -14.15949 -13.93219 -13.69663 -13.29699 -13.25260 -13.07939 -12.88612 -12.84779 -12.76826 -12.74275 -12.41064 -12.34801 -12.20050 -12.10727 -12.01443 -11.85320 -11.83059 -11.43043 -11.32418 -11.32217 -10.99658 -10.79464 -10.60060 -10.30421 -9.73648 -9.01250 -8.24050 -6.08460 1.43168 1.48183 1.53322 2.26535 2.39265 3.02931 3.11014 3.79221 3.85222 3.88309 3.91738 3.94778 4.18670 4.44933 4.52821 4.53890 4.57361 4.60614 4.63492 4.65982 4.66481 4.72025 4.74824 4.80554 4.83139 4.85587 4.86976 4.91136 5.10370 5.14636 5.17038 5.21994 5.25069 5.29978 5.36574 5.46410 5.51924 5.52934 5.54619 5.57398 5.60083 5.64002 5.72025 5.75832 5.82927 6.24578 6.80361 7.10825 7.79558 8.24633 8.80805 Molecular weight = 291.19amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.007784 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.952868 B = 3596.462022 C = 4514.579340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.030 3.970 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.454 5.454 10 C 0.502 3.498 11 O -0.641 6.641 12 C -0.091 4.091 13 H 0.100 0.900 14 C -0.079 4.079 15 C -0.091 4.091 16 C -0.102 4.102 17 C -0.118 4.118 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.105 4.105 21 C 0.121 3.879 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.108 4.108 25 C -0.122 4.122 26 H 0.270 0.730 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 0.440 3.590 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.456 4.456 8 H 0.097 0.903 9 N -0.172 5.172 10 C 0.294 3.706 11 O -0.530 6.530 12 C -0.112 4.112 13 H 0.117 0.883 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.140 4.140 17 C -0.156 4.156 18 C -0.086 4.086 19 C -0.144 4.144 20 C -0.142 4.142 21 C 0.017 3.983 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.160 4.160 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.209 0.057 3.790 6.442 hybrid contribution -0.354 0.736 -0.538 0.978 sum 4.855 0.793 3.252 5.897 Atomic orbital electron populations 1.70003 1.07601 1.28554 1.46045 1.26019 0.95256 1.01871 0.94224 0.85824 0.78966 0.78543 0.79889 1.19447 1.21209 1.17430 1.19068 0.95410 0.83952 1.47208 0.90255 1.43561 1.50230 1.11427 1.11987 1.21010 0.78333 0.89112 0.82109 1.90365 1.53612 1.34341 1.74652 1.21304 0.98560 0.96909 0.94382 0.88282 1.21345 0.94704 1.00422 0.95234 1.21176 0.99598 0.95716 0.94490 1.21460 0.95895 0.95741 1.00855 1.21648 0.96086 0.98582 0.99255 1.20780 0.97254 0.96137 0.94477 1.21505 0.97854 0.96045 0.99045 1.21492 0.93608 0.98236 1.00872 1.21741 0.96405 0.89151 0.90975 1.22556 0.95891 1.00149 0.97344 1.22389 0.99656 0.98705 0.93865 1.22206 0.96271 0.99192 0.96887 1.22298 0.97798 1.01130 0.94815 0.92053 0.93195 0.92784 0.89915 0.93891 0.90131 0.92034 0.92518 0.94915 0.90610 0.93135 0.89830 0.92081 0.93210 0.91576 0.92493 0.90795 0.89860 0.90572 0.92358 0.93592 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.83 11.23 21.66 0.24 -45.59 16 2 C 0.03 1.43 3.17 84.93 0.27 1.70 16 3 Si 0.94 37.86 27.87 68.60 1.91 39.77 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.25 -9.44 6.39 99.48 0.64 -8.80 16 7 C -0.33 -15.87 5.52 84.04 0.46 -15.40 16 8 H 0.08 3.77 6.75 -2.91 -0.02 3.75 16 9 N -0.45 -22.57 2.31 -609.38 -1.41 -23.98 16 10 C 0.50 26.15 6.11 87.66 0.54 26.68 16 11 O -0.64 -36.10 13.00 -3.07 -0.04 -36.14 16 12 C -0.09 -4.15 1.67 -11.54 -0.02 -4.17 16 13 H 0.10 5.01 4.90 -2.39 -0.01 5.00 16 14 C -0.08 -3.19 3.77 30.60 0.12 -3.08 16 15 C -0.09 -2.93 3.19 -10.82 -0.03 -2.97 16 16 C -0.10 -3.30 5.71 30.59 0.17 -3.12 16 17 C -0.12 -4.49 5.39 30.59 0.16 -4.33 16 18 C -0.07 -2.75 2.37 -10.79 -0.03 -2.78 16 19 C -0.11 -3.45 5.71 30.59 0.17 -3.28 16 20 C -0.10 -2.97 5.70 30.57 0.17 -2.80 16 21 C 0.12 5.49 3.30 45.72 0.15 5.64 16 22 C -0.12 -4.49 6.41 31.67 0.20 -4.29 16 23 C -0.11 -3.20 6.91 31.88 0.22 -2.98 16 24 C -0.11 -3.55 6.83 31.67 0.22 -3.33 16 25 C -0.12 -5.14 6.28 31.32 0.20 -4.94 16 26 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 27 H 0.05 2.18 6.69 -2.39 -0.02 2.16 16 28 H 0.05 2.19 5.00 -2.39 -0.01 2.18 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.59 5.50 -2.38 -0.01 2.57 16 34 H 0.03 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.05 2.47 6.95 -2.39 -0.02 2.45 16 40 H 0.07 2.58 6.35 -2.39 -0.02 2.56 16 41 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.06 2.78 7.37 -2.39 -0.02 2.76 16 Total: -1.00 -58.92 332.96 4.55 -54.37 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.87 Total: 35.00 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 2.98 Total: -23.44 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.17 Total: -69.57 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.04 Total: -36.14 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.91 Total: 39.77 kcal Total: -58.92 4.55 -54.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336817841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.803 kcal (2) G-P(sol) polarization free energy of solvation -58.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds