Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 N 1.46903 * 109.46703 * 184.03376 * 3 2 1 5 5 C 1.46908 * 110.99740 * 199.86655 * 4 3 2 6 6 C 1.50703 * 109.46829 * 71.48284 * 5 4 3 7 7 C 1.38244 * 119.96948 * 263.54590 * 6 5 4 8 8 C 1.38204 * 120.01969 * 179.72672 * 7 6 5 9 9 C 1.38456 * 119.97377 * 0.57437 * 8 7 6 10 10 F 1.35100 * 120.02548 * 179.67955 * 9 8 7 11 11 C 1.38459 * 119.95236 * 359.69660 * 9 8 7 12 12 C 1.38203 * 119.96885 * 0.02562 * 11 9 8 13 13 C 1.46902 * 110.99876 * 75.91824 * 4 3 2 14 14 C 1.53004 * 109.46826 * 200.26826 * 13 4 3 15 15 C 1.50694 * 115.54908 * 55.54817 * 14 13 4 16 16 H 1.08005 * 119.99450 * 272.97119 * 15 14 13 17 17 C 1.37879 * 120.00329 * 92.70339 * 15 14 13 18 18 N 1.31514 * 119.99953 * 172.30543 * 17 15 14 19 19 Si 1.86798 * 119.99857 * 352.29983 * 17 15 14 20 20 H 1.48493 * 109.46997 * 93.37442 * 19 17 15 21 21 H 1.48498 * 109.47257 * 213.37755 * 19 17 15 22 22 H 1.48510 * 109.47100 * 333.37766 * 19 17 15 23 23 C 1.53004 * 117.51171 * 201.24552 * 14 13 4 24 24 C 1.53002 * 117.49751 * 269.87247 * 14 13 4 25 25 H 1.09001 * 109.47459 * 299.99281 * 1 2 3 26 26 H 1.09001 * 109.47297 * 59.99723 * 1 2 3 27 27 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46816 * 240.00414 * 2 1 3 29 29 H 1.09001 * 109.47297 * 120.00277 * 2 1 3 30 30 H 1.08999 * 109.46829 * 64.03832 * 3 2 1 31 31 H 1.08998 * 109.47697 * 304.03341 * 3 2 1 32 32 H 1.09000 * 109.46519 * 191.48256 * 5 4 3 33 33 H 1.09002 * 109.46972 * 311.47990 * 5 4 3 34 34 H 1.07997 * 119.99198 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.01035 * 180.25379 * 8 7 6 36 36 H 1.07997 * 120.01777 * 179.97438 * 11 9 8 37 37 H 1.08008 * 119.98312 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.47347 * 80.26741 * 13 4 3 39 39 H 1.09000 * 109.46837 * 320.26424 * 13 4 3 40 40 H 0.97002 * 120.00019 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.49500 * 214.96544 * 23 14 13 42 42 H 1.08992 * 117.50464 * 359.97438 * 23 14 13 43 43 H 1.09002 * 117.49486 * 359.97438 * 24 14 13 44 44 H 1.08997 * 117.49493 * 144.97381 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5057 1.4437 -0.0974 5 6 4.0629 2.7227 0.3628 6 6 3.9205 2.8230 1.8598 7 6 2.8486 3.5029 2.4075 8 6 2.7140 3.5907 3.7801 9 6 3.6594 3.0075 4.6066 10 9 3.5322 3.0983 5.9486 11 6 4.7354 2.3316 4.0569 12 6 4.8649 2.2402 2.6840 13 6 3.9425 1.1417 -1.4671 14 6 5.3937 0.6573 -1.4445 15 6 5.6708 -0.5236 -0.5503 16 1 5.9059 -0.3679 0.4923 17 6 5.6189 -1.8029 -1.0618 18 7 6.0065 -2.8216 -0.3258 19 14 4.9978 -2.0892 -2.8001 20 1 6.1471 -2.1036 -3.7402 21 1 4.2894 -3.3928 -2.8642 22 1 4.0630 -0.9988 -3.1777 23 6 6.1943 0.7629 -2.7440 24 6 6.4929 1.7127 -1.5822 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.7368 1.9350 0.9240 31 1 1.6188 1.9769 -0.8516 32 1 5.1177 2.7773 0.0937 33 1 3.5244 3.5445 -0.1093 34 1 2.1142 3.9623 1.7626 35 1 1.8744 4.1184 4.2079 36 1 5.4737 1.8767 4.7006 37 1 5.7045 1.7133 2.2548 38 1 3.8691 2.0411 -2.0786 39 1 3.3062 0.3632 -1.8880 40 1 5.9696 -3.7217 -0.6856 41 1 6.9217 -0.0219 -2.9521 42 1 5.6873 1.1770 -3.6154 43 1 6.1821 2.7519 -1.6894 44 1 7.4163 1.5530 -1.0257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190604607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = 5.191345 kcal Electronic energy + Delta-G solvation = -23920.811407 eV Core-core repulsion = 20560.253349 eV Total energy + Delta-G solvation = -3360.558058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.75356 -39.29925 -37.77108 -35.78144 -32.98932 -31.93378 -30.96015 -30.71956 -26.81342 -26.25482 -25.15553 -22.88212 -22.73956 -21.70395 -20.92842 -20.27210 -18.89775 -17.48797 -16.28048 -16.17361 -15.74338 -15.46278 -15.15632 -14.63850 -14.56532 -14.11574 -13.94841 -13.72505 -13.40349 -13.15969 -13.05364 -12.77389 -12.54232 -12.02862 -11.95719 -11.85161 -11.53646 -11.31487 -11.19576 -10.89293 -10.78623 -10.63306 -10.52095 -10.39105 -10.11035 -9.94900 -9.56892 -8.92616 -8.90153 -8.48607 -8.46907 -8.30079 -7.57748 -5.98570 -3.95177 1.31155 1.42983 3.33121 3.43266 3.45253 3.72549 4.41286 4.46302 4.51029 4.87243 4.99593 5.00933 5.07471 5.30145 5.34161 5.36663 5.43475 5.49008 5.70164 5.72326 5.74052 5.85702 5.93426 5.98439 6.03917 6.11486 6.14158 6.17550 6.22418 6.24223 6.28547 6.30550 6.45433 6.47847 6.53162 6.62915 6.73944 6.77808 6.84695 7.08064 7.09808 7.19392 7.67291 7.79292 7.90189 8.66168 9.08989 9.66361 11.14211 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.005247 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.423370 B = 5334.774591 C = 5775.212832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.055 3.945 4 N -0.504 5.504 5 C 0.091 3.909 6 C -0.073 4.073 7 C -0.093 4.093 8 C -0.160 4.160 9 C 0.086 3.914 10 F -0.147 7.147 11 C -0.154 4.154 12 C -0.056 4.056 13 C 0.093 3.907 14 C 0.014 3.986 15 C -0.453 4.453 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.902 5.902 19 Si 0.874 3.126 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.187 4.187 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 12.169 2.882 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.073 4.073 4 N -0.227 5.227 5 C -0.036 4.036 6 C -0.074 4.074 7 C -0.111 4.111 8 C -0.179 4.179 9 C 0.067 3.933 10 F -0.126 7.126 11 C -0.172 4.172 12 C -0.075 4.075 13 C -0.035 4.035 14 C 0.013 3.987 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.541 5.541 19 Si 0.703 3.297 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.187 1.187 23 C -0.242 4.242 24 C -0.225 4.225 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.236 11.597 3.231 14.046 hybrid contribution -0.702 0.270 -1.292 1.495 sum -7.938 11.866 1.940 14.408 Atomic orbital electron populations 1.21751 0.96675 1.01297 1.00924 1.21475 0.93830 0.96714 1.03659 1.22178 0.88352 0.97070 0.99739 1.61691 1.07129 1.29515 1.24361 1.21120 1.01951 0.90562 0.89962 1.19935 0.94427 0.96779 0.96232 1.20888 0.97511 0.98924 0.93794 1.20980 0.99765 1.03252 0.93874 1.17717 0.97300 1.01544 0.76739 1.91463 1.95952 1.94795 1.30400 1.21189 0.98199 1.01416 0.96436 1.21074 0.99170 0.95630 0.91611 1.21943 0.97904 0.97111 0.86508 1.19421 0.87524 0.96839 0.94928 1.20071 1.45576 0.87054 0.96340 0.90265 1.24905 0.94742 0.96080 0.96892 1.69901 1.47650 0.99157 1.37360 0.86960 0.79539 0.77080 0.86078 1.20955 1.22440 1.18745 1.22946 1.05762 1.03188 0.92336 1.22881 1.02637 0.93783 1.03167 0.93184 0.93422 0.92865 0.91691 0.90855 0.91361 0.95994 0.88671 0.95174 0.85758 0.85404 0.84959 0.84070 0.97315 0.90955 0.92935 0.89409 0.91331 0.91461 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.93 6.09 -26.73 -0.16 -2.10 16 3 C 0.05 0.85 4.80 -3.82 -0.02 0.83 16 4 N -0.50 -8.96 4.02 -236.06 -0.95 -9.91 16 5 C 0.09 1.41 4.92 -4.97 -0.02 1.38 16 6 C -0.07 -1.06 4.94 -104.62 -0.52 -1.58 16 7 C -0.09 -1.17 8.20 -39.59 -0.32 -1.49 16 8 C -0.16 -2.00 10.03 -39.51 -0.40 -2.40 16 9 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 10 F -0.15 -2.08 17.27 2.25 0.04 -2.05 16 11 C -0.15 -2.18 10.03 -39.51 -0.40 -2.58 16 12 C -0.06 -0.86 9.72 -39.59 -0.38 -1.24 16 13 C 0.09 1.80 4.52 -3.82 -0.02 1.78 16 14 C 0.01 0.31 0.78 -155.66 -0.12 0.19 16 15 C -0.45 -11.90 9.13 -34.44 -0.31 -12.22 16 16 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 17 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 19 Si 0.87 21.33 24.87 -169.99 -4.23 17.10 16 20 H -0.28 -6.86 7.10 56.52 0.40 -6.46 16 21 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.26 -6.03 5.70 56.52 0.32 -5.70 16 23 C -0.20 -4.21 7.61 -26.73 -0.20 -4.41 16 24 C -0.19 -3.59 8.47 -26.73 -0.23 -3.81 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.18 6.69 -51.93 -0.35 0.84 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 0.98 5.77 -51.93 -0.30 0.68 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.10 1.54 5.50 -51.93 -0.29 1.25 16 33 H 0.03 0.41 7.96 -51.93 -0.41 0.00 16 34 H 0.12 1.32 7.90 -52.49 -0.41 0.90 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 38 H 0.01 0.16 7.95 -51.93 -0.41 -0.26 16 39 H 0.07 1.51 4.93 -51.93 -0.26 1.25 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.09 1.94 7.06 -51.93 -0.37 1.57 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 44 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -28.55 350.62 -9.25 -37.80 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.05 Total: 4.27 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -3.12 Total: -26.32 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.17 Total: -36.09 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.23 Total: 17.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.55 -9.25 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190604607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.994 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds