Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 N 1.46903 * 109.46703 * 184.03376 * 3 2 1 5 5 C 1.46908 * 110.99740 * 199.86655 * 4 3 2 6 6 C 1.50703 * 109.46829 * 71.48284 * 5 4 3 7 7 C 1.38244 * 119.96948 * 263.54590 * 6 5 4 8 8 C 1.38204 * 120.01969 * 179.72672 * 7 6 5 9 9 C 1.38456 * 119.97377 * 0.57437 * 8 7 6 10 10 F 1.35100 * 120.02548 * 179.67955 * 9 8 7 11 11 C 1.38459 * 119.95236 * 359.69660 * 9 8 7 12 12 C 1.38203 * 119.96885 * 0.02562 * 11 9 8 13 13 C 1.46902 * 110.99876 * 75.91824 * 4 3 2 14 14 C 1.53004 * 109.46826 * 200.26826 * 13 4 3 15 15 C 1.50694 * 115.54908 * 55.54817 * 14 13 4 16 16 H 1.08005 * 119.99450 * 272.97119 * 15 14 13 17 17 C 1.37879 * 120.00329 * 92.70339 * 15 14 13 18 18 N 1.31514 * 119.99953 * 172.30543 * 17 15 14 19 19 Si 1.86798 * 119.99857 * 352.29983 * 17 15 14 20 20 H 1.48493 * 109.46997 * 93.37442 * 19 17 15 21 21 H 1.48498 * 109.47257 * 213.37755 * 19 17 15 22 22 H 1.48510 * 109.47100 * 333.37766 * 19 17 15 23 23 C 1.53004 * 117.51171 * 201.24552 * 14 13 4 24 24 C 1.53002 * 117.49751 * 269.87247 * 14 13 4 25 25 H 1.09001 * 109.47459 * 299.99281 * 1 2 3 26 26 H 1.09001 * 109.47297 * 59.99723 * 1 2 3 27 27 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46816 * 240.00414 * 2 1 3 29 29 H 1.09001 * 109.47297 * 120.00277 * 2 1 3 30 30 H 1.08999 * 109.46829 * 64.03832 * 3 2 1 31 31 H 1.08998 * 109.47697 * 304.03341 * 3 2 1 32 32 H 1.09000 * 109.46519 * 191.48256 * 5 4 3 33 33 H 1.09002 * 109.46972 * 311.47990 * 5 4 3 34 34 H 1.07997 * 119.99198 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.01035 * 180.25379 * 8 7 6 36 36 H 1.07997 * 120.01777 * 179.97438 * 11 9 8 37 37 H 1.08008 * 119.98312 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.47347 * 80.26741 * 13 4 3 39 39 H 1.09000 * 109.46837 * 320.26424 * 13 4 3 40 40 H 0.97002 * 120.00019 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.49500 * 214.96544 * 23 14 13 42 42 H 1.08992 * 117.50464 * 359.97438 * 23 14 13 43 43 H 1.09002 * 117.49486 * 359.97438 * 24 14 13 44 44 H 1.08997 * 117.49493 * 144.97381 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5057 1.4437 -0.0974 5 6 4.0629 2.7227 0.3628 6 6 3.9205 2.8230 1.8598 7 6 2.8486 3.5029 2.4075 8 6 2.7140 3.5907 3.7801 9 6 3.6594 3.0075 4.6066 10 9 3.5322 3.0983 5.9486 11 6 4.7354 2.3316 4.0569 12 6 4.8649 2.2402 2.6840 13 6 3.9425 1.1417 -1.4671 14 6 5.3937 0.6573 -1.4445 15 6 5.6708 -0.5236 -0.5503 16 1 5.9059 -0.3679 0.4923 17 6 5.6189 -1.8029 -1.0618 18 7 6.0065 -2.8216 -0.3258 19 14 4.9978 -2.0892 -2.8001 20 1 6.1471 -2.1036 -3.7402 21 1 4.2894 -3.3928 -2.8642 22 1 4.0630 -0.9988 -3.1777 23 6 6.1943 0.7629 -2.7440 24 6 6.4929 1.7127 -1.5822 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.7368 1.9350 0.9240 31 1 1.6188 1.9769 -0.8516 32 1 5.1177 2.7773 0.0937 33 1 3.5244 3.5445 -0.1093 34 1 2.1142 3.9623 1.7626 35 1 1.8744 4.1184 4.2079 36 1 5.4737 1.8767 4.7006 37 1 5.7045 1.7133 2.2548 38 1 3.8691 2.0411 -2.0786 39 1 3.3062 0.3632 -1.8880 40 1 5.9696 -3.7217 -0.6856 41 1 6.9217 -0.0219 -2.9521 42 1 5.6873 1.1770 -3.6154 43 1 6.1821 2.7519 -1.6894 44 1 7.4163 1.5530 -1.0257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190604607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -9.695896 kcal Electronic energy + Delta-G solvation = -23921.456966 eV Core-core repulsion = 20560.253349 eV Total energy + Delta-G solvation = -3361.203617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85395 -40.48102 -39.17803 -37.23165 -34.24190 -33.97837 -32.03359 -31.89638 -28.38032 -27.40802 -27.00379 -24.02285 -23.92623 -23.27587 -22.10214 -21.54484 -20.68510 -18.57936 -18.15014 -17.28657 -17.04012 -16.73894 -16.54806 -16.20854 -15.84438 -15.37258 -15.35644 -14.97912 -14.72853 -14.44356 -14.40456 -14.27236 -14.05741 -13.37867 -13.20464 -13.10810 -13.00587 -12.71932 -12.58988 -12.23553 -12.21348 -12.07969 -11.89569 -11.82441 -11.67304 -11.47443 -11.34721 -10.71245 -10.50032 -10.14598 -9.97106 -9.48483 -8.86005 -8.14615 -6.13114 0.21164 0.36192 1.37387 1.40993 1.51360 2.45719 2.60377 3.10249 3.21421 3.34169 3.51932 3.83664 3.89413 4.03516 4.10842 4.17502 4.26131 4.37154 4.41259 4.44378 4.50488 4.57434 4.60822 4.64791 4.76416 4.80986 4.83893 4.89757 4.97924 5.03374 5.07404 5.14213 5.15241 5.21273 5.26976 5.35491 5.36024 5.46202 5.52609 5.59698 5.71517 5.85305 6.00410 6.37383 6.50303 6.57822 6.92880 7.51354 9.02246 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.005247 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.423370 B = 5334.774591 C = 5775.212832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.059 3.941 4 N -0.533 5.533 5 C 0.095 3.905 6 C -0.081 4.081 7 C -0.083 4.083 8 C -0.150 4.150 9 C 0.075 3.925 10 F -0.150 7.150 11 C -0.164 4.164 12 C -0.077 4.077 13 C 0.102 3.898 14 C -0.010 4.010 15 C -0.436 4.436 16 H 0.033 0.967 17 C 0.015 3.985 18 N -0.958 5.958 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.308 1.308 22 H -0.234 1.234 23 C -0.204 4.204 24 C -0.165 4.165 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.258 0.742 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.942 15.363 1.359 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.069 4.069 4 N -0.257 5.257 5 C -0.032 4.032 6 C -0.082 4.082 7 C -0.102 4.102 8 C -0.169 4.169 9 C 0.056 3.944 10 F -0.129 7.129 11 C -0.182 4.182 12 C -0.096 4.096 13 C -0.025 4.025 14 C -0.011 4.011 15 C -0.474 4.474 16 H 0.051 0.949 17 C -0.180 4.180 18 N -0.600 5.600 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.236 1.236 22 H -0.157 1.157 23 C -0.242 4.242 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.755 14.830 1.703 17.832 hybrid contribution 0.146 -0.684 -0.670 0.969 sum -9.608 14.146 1.033 17.132 Atomic orbital electron populations 1.21681 0.93779 1.01873 1.02466 1.21459 0.96388 0.97099 1.00806 1.22185 0.86922 0.96447 1.01302 1.61568 1.08830 1.31577 1.23680 1.21096 1.01430 0.90280 0.90413 1.19983 0.94994 0.97313 0.95890 1.21160 0.97003 0.97797 0.94197 1.21318 0.99748 1.02089 0.93720 1.17882 0.97661 1.01973 0.76882 1.91456 1.95962 1.94842 1.30615 1.21244 0.98923 1.01883 0.96179 1.20958 0.99435 0.96837 0.92349 1.21693 0.95261 0.97646 0.87934 1.19348 0.90019 0.96461 0.95289 1.20201 1.43252 0.88938 0.95055 0.94905 1.25664 0.95500 0.95931 1.00894 1.70069 1.50669 0.99578 1.39669 0.86039 0.79511 0.77198 0.81530 1.20422 1.23574 1.15685 1.22983 1.05002 1.03142 0.93062 1.22867 1.00825 0.95054 1.01475 0.91635 0.91755 0.92909 0.94272 0.94039 0.89844 0.93893 0.90034 0.92289 0.82555 0.82442 0.84726 0.86613 0.94491 0.92597 0.93363 0.91501 0.88303 0.87847 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.78 6.09 30.60 0.19 -3.60 16 3 C 0.06 1.66 4.80 86.30 0.41 2.07 16 4 N -0.53 -18.08 4.02 -900.74 -3.62 -21.69 16 5 C 0.09 2.68 4.92 85.56 0.42 3.10 16 6 C -0.08 -2.23 4.94 -19.86 -0.10 -2.33 16 7 C -0.08 -1.81 8.20 22.26 0.18 -1.62 16 8 C -0.15 -3.28 10.03 22.31 0.22 -3.06 16 9 C 0.08 2.00 7.30 22.37 0.16 2.17 16 10 F -0.15 -4.07 17.27 44.97 0.78 -3.30 16 11 C -0.16 -4.74 10.03 22.31 0.22 -4.52 16 12 C -0.08 -2.42 9.72 22.26 0.22 -2.20 16 13 C 0.10 3.73 4.52 86.30 0.39 4.12 16 14 C -0.01 -0.42 0.78 -52.93 -0.04 -0.46 16 15 C -0.44 -23.84 9.13 25.60 0.23 -23.61 16 16 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 17 C 0.02 0.88 5.46 84.66 0.46 1.34 16 18 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 19 Si 0.93 44.62 24.87 68.60 1.71 46.33 16 20 H -0.28 -13.01 7.10 99.48 0.71 -12.30 16 21 H -0.31 -15.18 7.11 99.48 0.71 -14.48 16 22 H -0.23 -10.02 5.70 99.48 0.57 -9.46 16 23 C -0.20 -7.93 7.61 30.60 0.23 -7.70 16 24 C -0.17 -6.01 8.47 30.60 0.26 -5.75 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.42 6.69 -2.38 -0.02 1.40 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.08 5.77 -2.39 -0.01 2.07 16 31 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 32 H 0.08 2.49 5.50 -2.39 -0.01 2.48 16 33 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 34 H 0.16 2.42 7.90 -2.91 -0.02 2.40 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 38 H 0.04 1.15 7.95 -2.39 -0.02 1.13 16 39 H 0.06 2.21 4.93 -2.39 -0.01 2.20 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.07 2.88 7.06 -2.38 -0.02 2.86 16 42 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.10 3.05 7.58 -2.39 -0.02 3.03 16 44 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -65.60 350.62 4.18 -61.42 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.83 Total: 22.02 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.18 Total: -44.62 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.32 Total: -81.85 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.71 Total: 46.33 kcal Total: -65.60 4.18 -61.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190604607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.723 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds