Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 H 1.09001 * 109.47332 * 305.70007 * 3 2 1 5 5 N 1.46904 * 109.47110 * 65.69538 * 3 2 1 6 6 C 1.46894 * 111.00506 * 264.73869 * 5 3 2 7 7 C 1.52999 * 109.46865 * 276.72265 * 6 5 3 8 8 C 1.50698 * 115.55311 * 88.46787 * 7 6 5 9 9 H 1.07997 * 120.00307 * 218.99958 * 8 7 6 10 10 C 1.37878 * 120.00008 * 38.99571 * 8 7 6 11 11 N 1.31515 * 119.99762 * 15.74221 * 10 8 7 12 12 Si 1.86796 * 120.00175 * 195.73902 * 10 8 7 13 13 H 1.48494 * 109.47379 * 60.00335 * 12 10 8 14 14 H 1.48500 * 109.47126 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47173 * 299.99717 * 12 10 8 16 16 C 1.53001 * 117.49983 * 302.79601 * 7 6 5 17 17 C 1.52999 * 60.03130 * 252.49943 * 16 7 6 18 18 C 1.50696 * 109.46997 * 185.69974 * 3 2 1 19 19 C 1.38266 * 119.98642 * 105.85077 * 18 3 2 20 20 C 1.38226 * 120.05235 * 179.97438 * 19 18 3 21 21 C 1.38225 * 120.02050 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.01105 * 180.02562 * 21 20 19 23 23 C 1.38438 * 119.97633 * 359.97438 * 21 20 19 24 24 F 1.35102 * 120.02241 * 180.02562 * 23 21 20 25 25 C 1.38176 * 119.98813 * 285.57053 * 18 3 2 26 26 H 1.08999 * 109.47228 * 182.74943 * 1 2 3 27 27 H 1.09001 * 109.47032 * 302.75364 * 1 2 3 28 28 H 1.09001 * 109.47118 * 62.75418 * 1 2 3 29 29 H 1.09000 * 109.46537 * 239.99760 * 2 1 3 30 30 H 1.08998 * 109.46584 * 119.99856 * 2 1 3 31 31 H 1.00896 * 110.99877 * 140.77898 * 5 3 2 32 32 H 1.08993 * 109.47368 * 156.71848 * 6 5 3 33 33 H 1.09003 * 109.47366 * 36.71735 * 6 5 3 34 34 H 0.97005 * 119.99757 * 185.22213 * 11 10 8 35 35 H 1.09004 * 117.49532 * 359.97438 * 16 7 6 36 36 H 1.08998 * 117.50098 * 145.00296 * 16 7 6 37 37 H 1.09005 * 117.50230 * 107.50110 * 17 16 7 38 38 H 1.09009 * 117.50087 * 252.51945 * 17 16 7 39 39 H 1.07996 * 119.97501 * 359.97438 * 19 18 3 40 40 H 1.07994 * 119.99049 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.47033 * 89.99837 * 22 21 20 42 42 H 1.08999 * 109.47462 * 210.00375 * 22 21 20 43 43 H 1.09004 * 109.47123 * 330.00399 * 22 21 20 44 44 H 1.08004 * 120.01122 * 0.02562 * 25 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9850 -0.8345 5 7 1.6659 2.0942 1.2623 6 6 0.4142 2.8486 1.1145 7 6 0.7163 4.2265 0.5219 8 6 0.7239 4.2993 -0.9833 9 1 1.4586 4.9067 -1.4909 10 6 -0.2070 3.5903 -1.7125 11 7 -1.2771 3.1072 -1.1199 12 14 0.0516 3.3161 -3.5421 13 1 1.3182 2.5713 -3.7568 14 1 -1.0837 2.5313 -4.0903 15 1 0.1253 4.6281 -4.2337 16 6 1.7025 5.1196 1.2773 17 6 0.2091 5.4517 1.2865 18 6 3.5404 1.4447 -0.1411 19 6 4.1211 1.8108 -1.3413 20 6 5.4972 1.8139 -1.4721 21 6 6.2943 1.4503 -0.4030 22 6 7.7945 1.4543 -0.5456 23 6 5.7139 1.0836 0.7992 24 9 6.4921 0.7286 1.8450 25 6 4.3355 1.0865 0.9308 26 1 -0.3633 -1.0265 0.0493 27 1 -0.3633 0.5560 0.8643 28 1 -0.3633 0.4705 -0.9137 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4093 2.6889 1.5964 32 1 -0.0555 2.9680 2.0907 33 1 -0.2600 2.3076 0.4505 34 1 -1.8933 2.5449 -1.6149 35 1 2.1358 4.7257 2.1967 36 1 2.3568 5.7599 0.6856 37 1 -0.3400 5.2762 2.2117 38 1 -0.1193 6.3103 0.7005 39 1 3.4991 2.0946 -2.1773 40 1 5.9497 2.1004 -2.4099 41 1 8.1833 2.4339 -0.2675 42 1 8.2236 0.6942 0.1073 43 1 8.0617 1.2377 -1.5799 44 1 3.8818 0.8045 1.8694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307611708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -9.597565 kcal Electronic energy + Delta-G solvation = -24383.854363 eV Core-core repulsion = 21022.655011 eV Total energy + Delta-G solvation = -3361.199353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.69233 -39.35177 -37.47660 -35.34753 -32.40489 -32.20009 -30.95593 -30.27903 -27.92650 -25.80519 -24.92624 -23.18397 -22.51839 -21.27315 -21.10469 -19.80126 -18.94500 -17.13985 -16.32733 -16.19735 -15.51450 -15.48315 -14.87883 -14.65354 -14.16978 -13.75446 -13.50013 -13.44193 -13.33297 -13.09078 -12.85008 -12.45990 -12.29095 -12.07455 -11.76362 -11.63755 -11.38420 -11.29043 -11.14063 -10.98285 -10.81306 -10.57713 -10.38179 -10.27868 -10.11267 -9.83264 -9.63755 -9.02049 -8.74419 -8.62053 -8.24859 -8.11200 -7.41242 -6.18359 -4.16562 1.39895 1.46675 3.17433 3.25737 3.27823 3.81611 4.27627 4.44745 4.82828 4.86129 4.93306 5.07260 5.21556 5.36668 5.51134 5.55246 5.61597 5.70922 5.79332 5.81219 5.91865 6.02095 6.10812 6.23681 6.30729 6.34477 6.41599 6.45934 6.52572 6.55577 6.58260 6.62229 6.67072 6.75785 6.79737 7.00096 7.01596 7.09395 7.19020 7.26004 7.38798 7.53231 7.82790 8.11086 8.26032 8.46976 8.78840 9.39269 10.84563 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.005870 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.297998 B = 4768.725957 C = 5025.570020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C 0.114 3.886 4 H 0.097 0.903 5 N -0.677 5.677 6 C 0.068 3.932 7 C 0.026 3.974 8 C -0.484 4.484 9 H 0.056 0.944 10 C 0.074 3.926 11 N -0.865 5.865 12 Si 0.871 3.129 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.276 1.276 16 C -0.213 4.213 17 C -0.199 4.199 18 C -0.048 4.048 19 C -0.113 4.113 20 C -0.096 4.096 21 C -0.133 4.133 22 C -0.109 4.109 23 C 0.088 3.912 24 F -0.145 7.145 25 C -0.137 4.137 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.328 0.672 32 H 0.039 0.961 33 H 0.134 0.866 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -5.586 0.677 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C 0.004 3.996 4 H 0.115 0.885 5 N -0.306 5.306 6 C -0.060 4.060 7 C 0.024 3.976 8 C -0.521 4.521 9 H 0.074 0.926 10 C -0.129 4.129 11 N -0.501 5.501 12 Si 0.698 3.302 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.202 1.202 16 C -0.250 4.250 17 C -0.238 4.238 18 C -0.048 4.048 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.166 4.166 23 C 0.068 3.932 24 F -0.124 7.124 25 C -0.156 4.156 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.057 0.943 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.863 -6.235 0.922 11.705 hybrid contribution 0.569 0.851 -1.240 1.608 sum 10.431 -5.384 -0.318 11.743 Atomic orbital electron populations 1.21822 0.95258 0.99970 1.03500 1.21496 0.96590 0.95497 1.00417 1.20764 0.87675 0.95850 0.95280 0.88549 1.61065 1.07037 1.35665 1.26851 1.22166 0.91272 0.93334 0.99207 1.19817 0.95599 0.88993 0.93195 1.20512 1.13993 1.28703 0.88899 0.92557 1.24847 0.93882 0.96355 0.97781 1.69965 1.09829 1.33175 1.37168 0.86988 0.78134 0.78721 0.86374 1.19837 1.20949 1.20172 1.22808 0.92596 1.07597 1.02032 1.22947 0.94679 1.04205 1.01941 1.20148 0.96776 0.95492 0.92428 1.21259 0.94578 0.99217 0.98093 1.20849 0.93332 0.99423 0.97830 1.19826 0.96783 1.03644 0.93110 1.20664 0.90871 1.02474 1.02575 1.17525 0.88663 1.02683 0.84287 1.91439 1.74854 1.89780 1.56290 1.21038 0.90927 1.02693 1.00911 0.94412 0.91042 0.92445 0.93202 0.92337 0.85417 0.94265 0.84878 0.92655 0.91510 0.91035 0.91804 0.90814 0.85211 0.85527 0.91208 0.91596 0.91345 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.74 37.16 0.32 -2.31 16 2 C -0.10 -1.73 5.53 -26.73 -0.15 -1.88 16 3 C 0.11 2.12 2.27 -68.87 -0.16 1.96 16 4 H 0.10 2.09 5.10 -51.93 -0.26 1.82 16 5 N -0.68 -13.01 5.93 -107.96 -0.64 -13.65 16 6 C 0.07 1.50 4.83 -3.83 -0.02 1.48 16 7 C 0.03 0.60 1.82 -155.62 -0.28 0.32 16 8 C -0.48 -12.18 7.76 -34.44 -0.27 -12.45 16 9 H 0.06 1.46 7.86 -52.49 -0.41 1.05 16 10 C 0.07 1.85 4.18 -17.82 -0.07 1.77 16 11 N -0.86 -21.93 11.05 55.43 0.61 -21.31 16 12 Si 0.87 19.37 29.57 -169.99 -5.03 14.34 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.21 -4.52 9.21 -26.73 -0.25 -4.77 16 17 C -0.20 -4.49 9.88 -26.69 -0.26 -4.75 16 18 C -0.05 -0.81 4.67 -104.64 -0.49 -1.30 16 19 C -0.11 -1.83 9.67 -39.58 -0.38 -2.21 16 20 C -0.10 -1.34 9.70 -39.59 -0.38 -1.73 16 21 C -0.13 -1.83 5.89 -104.55 -0.62 -2.45 16 22 C -0.11 -1.17 9.83 36.01 0.35 -0.82 16 23 C 0.09 1.33 7.24 -39.42 -0.29 1.04 16 24 F -0.14 -2.18 16.48 2.25 0.04 -2.14 16 25 C -0.14 -2.17 8.85 -39.52 -0.35 -2.52 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.37 5.94 -51.93 -0.31 1.06 16 28 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.33 6.29 6.29 -39.29 -0.25 6.04 16 32 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 33 H 0.13 3.08 2.74 -51.93 -0.14 2.94 16 34 H 0.26 6.45 8.32 -40.82 -0.34 6.11 16 35 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 38 H 0.07 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.13 2.16 7.99 -52.49 -0.42 1.74 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 43 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.14 2.15 7.89 -52.48 -0.41 1.73 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -24.81 350.82 -9.78 -34.59 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.76 Total: 13.50 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -3.28 Total: -30.61 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.03 Total: -34.97 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -24.81 -9.78 -34.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307611708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.994 kcal (2) G-P(sol) polarization free energy of solvation -24.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds