Wall clock time and date at job start Tue Mar 31 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47319 * 2 1 4 4 C 1.53004 * 109.47156 * 240.00043 * 2 1 3 5 5 C 1.47200 * 109.47116 * 174.99749 * 4 2 1 6 6 N 3.43552 * 154.82421 * 248.43387 * 2 1 3 7 7 N 1.46898 * 109.47278 * 120.00075 * 2 1 3 8 8 C 1.46901 * 110.99797 * 58.95261 * 7 2 1 9 9 C 1.38575 * 111.00299 * 295.00235 * 7 2 1 10 10 N 1.31221 * 126.47754 * 87.15919 * 9 7 2 11 11 N 1.28520 * 109.85974 * 179.97438 * 10 9 7 12 12 C 1.30289 * 110.05836 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.34893 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.46869 * 300.02352 * 13 12 11 16 16 C 1.52999 * 109.47334 * 60.02351 * 13 12 11 17 17 C 1.50696 * 109.47159 * 175.00263 * 16 13 12 18 18 H 1.07991 * 120.00160 * 359.97438 * 17 16 13 19 19 C 1.37886 * 119.99782 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47242 * 60.00045 * 21 19 17 23 23 H 1.48507 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47230 * 299.99860 * 21 19 17 25 25 N 1.36453 * 126.47380 * 266.85805 * 9 7 2 26 26 C 1.46500 * 127.13567 * 0.02674 * 25 9 7 27 27 H 1.09004 * 109.47550 * 299.99772 * 1 2 3 28 28 H 1.09001 * 109.47322 * 59.99884 * 1 2 3 29 29 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47032 * 294.99974 * 4 2 1 31 31 H 1.08997 * 109.47253 * 55.00243 * 4 2 1 32 32 H 1.08999 * 109.47100 * 60.75636 * 8 7 2 33 33 H 1.09003 * 109.47251 * 180.75244 * 8 7 2 34 34 H 1.08992 * 109.47481 * 300.75128 * 8 7 2 35 35 H 1.09002 * 109.46991 * 60.00017 * 15 13 12 36 36 H 1.08994 * 109.46524 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.46888 * 299.99715 * 15 13 12 38 38 H 1.09002 * 109.46903 * 295.00534 * 16 13 12 39 39 H 1.08996 * 109.47267 * 54.99678 * 16 13 12 40 40 H 0.96999 * 120.00012 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46892 * 95.75592 * 26 25 9 42 42 H 1.08999 * 109.47591 * 215.75654 * 26 25 9 43 43 H 1.09005 * 109.47619 * 335.75996 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5070 -0.6173 -1.3113 6 7 4.6391 -0.5372 -1.3591 7 7 2.0196 -0.6925 1.1994 8 6 1.5282 -2.0761 1.2459 9 6 1.6697 -0.0024 2.3490 10 7 0.5485 -0.1224 3.0201 11 7 0.5597 0.6676 4.0338 12 6 1.6790 1.3335 4.0690 13 6 2.0766 2.3582 5.1001 14 1 3.0690 2.7435 4.8656 15 6 1.0677 3.5085 5.0913 16 6 2.0962 1.7076 6.4847 17 6 2.6114 2.6974 7.4976 18 1 2.8966 3.6909 7.1850 19 6 2.7194 2.3340 8.8233 20 7 2.3725 1.1239 9.2038 21 14 3.3586 3.5607 10.0787 22 1 2.4710 4.7511 10.1041 23 1 3.3775 2.9293 11.4226 24 1 4.7348 3.9773 9.7075 25 7 2.4283 0.9262 3.0003 26 6 3.7665 1.3928 2.6293 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7516 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 1.8873 -2.6187 0.3714 33 1 1.8946 -2.5616 2.1504 34 1 0.4383 -2.0747 1.2504 35 1 0.0754 3.1232 5.3258 36 1 1.3551 4.2494 5.8373 37 1 1.0538 3.9720 4.1049 38 1 1.0860 1.4017 6.7567 39 1 2.7477 0.8339 6.4664 40 1 2.4489 0.8682 10.1364 41 1 3.6830 2.3114 2.0485 42 1 4.3475 1.5848 3.5313 43 1 4.2649 0.6293 2.0318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340074607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:20 Heat of formation + Delta-G solvation = 108.188964 kcal Electronic energy + Delta-G solvation = -23607.969791 eV Core-core repulsion = 20304.090758 eV Total energy + Delta-G solvation = -3303.879033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.175 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.68121 -39.09521 -36.52194 -35.33300 -34.49522 -32.65677 -32.02568 -28.84364 -28.36931 -27.43499 -26.93879 -26.33227 -24.10821 -22.21071 -21.91208 -20.11945 -19.11381 -17.96015 -17.34233 -16.67647 -16.44240 -15.80578 -15.21437 -14.71422 -14.51041 -14.24687 -14.15689 -13.86999 -13.27869 -13.21846 -13.13070 -12.73828 -12.71001 -12.41509 -12.34825 -12.23026 -11.86838 -11.77441 -11.71837 -11.37276 -11.15225 -11.05046 -10.92979 -10.76975 -10.50293 -10.36005 -9.93732 -9.83383 -9.67132 -9.13853 -9.04026 -8.37468 -8.25075 -6.00785 -4.04675 2.03481 2.42835 2.54047 2.60647 3.24416 3.32245 3.37614 3.38860 3.58821 3.74619 4.33350 4.43424 4.58820 4.80301 4.86506 4.91456 4.95006 5.06095 5.15265 5.18373 5.25246 5.34535 5.39954 5.45139 5.50768 5.58993 5.71109 5.80147 6.01412 6.02886 6.07469 6.20741 6.29589 6.49981 6.68120 6.77975 6.89012 7.02923 7.35740 7.39531 7.61591 7.77443 7.98086 8.34053 9.00679 9.16093 9.58914 11.10239 Molecular weight = 291.18amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.003507 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.217196 B = 7981.499497 C = 8255.872868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.090 0.910 4 C -0.021 4.021 5 C 0.213 3.787 6 N -0.434 5.434 7 N -0.459 5.459 8 C 0.029 3.971 9 C 0.319 3.681 10 N -0.308 5.308 11 N -0.285 5.285 12 C 0.219 3.781 13 C -0.003 4.003 14 H 0.072 0.928 15 C -0.125 4.125 16 C 0.039 3.961 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 N -0.473 5.473 26 C 0.080 3.920 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -2.417 -21.913 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.108 0.892 4 C -0.061 4.061 5 C -0.105 4.105 6 N -0.111 5.111 7 N -0.184 5.184 8 C -0.118 4.118 9 C -0.037 4.037 10 N -0.153 5.153 11 N -0.124 5.124 12 C -0.048 4.048 13 C -0.024 4.024 14 H 0.091 0.909 15 C -0.183 4.183 16 C 0.001 3.999 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.203 1.203 25 N -0.166 5.166 26 C -0.064 4.064 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.108 -2.938 -21.492 21.720 hybrid contribution 0.622 0.900 0.452 1.183 sum -0.486 -2.039 -21.041 21.145 Atomic orbital electron populations 1.22453 0.94326 1.03761 1.03791 1.21758 0.94914 0.98144 0.87123 0.89215 1.19473 0.82635 1.04538 0.99465 1.28879 0.95029 0.93610 0.93004 1.81224 1.12853 1.08310 1.08706 1.58840 1.58775 1.02938 0.97847 1.22454 1.00382 0.85654 1.03284 1.22066 0.89533 0.95973 0.96163 1.74534 1.16539 1.19646 1.04590 1.74048 1.18201 1.06569 1.13625 1.25659 0.88971 1.00233 0.89967 1.20017 0.98404 0.90954 0.93074 0.90945 1.21665 0.99389 0.97375 0.99847 1.19098 0.98562 0.95462 0.86777 1.21101 1.43794 0.98722 0.92439 0.92380 1.25000 0.95473 0.95194 0.98543 1.69968 1.47651 1.18343 1.16921 0.86663 0.79381 0.81390 0.80585 1.20129 1.21313 1.20303 1.46219 1.16173 1.32496 1.21694 1.21984 0.80671 1.00850 1.02870 0.90577 0.91354 0.91079 0.86758 0.86243 0.90372 0.90679 0.92292 0.92033 0.90652 0.95031 0.94940 0.96842 0.92845 0.90789 0.88888 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.49 37.15 0.32 -1.10 16 2 C 0.09 0.71 2.29 -67.72 -0.16 0.55 16 3 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 4 C -0.02 -0.10 5.00 -29.52 -0.15 -0.24 16 5 C 0.21 1.84 15.15 -20.76 -0.31 1.53 16 6 N -0.43 -5.24 18.54 42.15 0.78 -4.46 16 7 N -0.46 -5.10 4.44 -174.76 -0.78 -5.88 16 8 C 0.03 0.28 8.48 60.06 0.51 0.79 16 9 C 0.32 4.90 5.96 -318.88 -1.90 3.00 16 10 N -0.31 -5.67 10.57 30.31 0.32 -5.35 16 11 N -0.29 -6.02 12.18 32.99 0.40 -5.62 16 12 C 0.22 4.25 6.58 -154.02 -1.01 3.24 16 13 C 0.00 -0.07 2.71 -91.77 -0.25 -0.32 16 14 H 0.07 1.35 7.10 -51.93 -0.37 0.98 16 15 C -0.12 -2.31 8.99 37.16 0.33 -1.98 16 16 C 0.04 1.00 4.43 -27.89 -0.12 0.87 16 17 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 16 18 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 N -0.47 -7.64 3.21 -121.46 -0.39 -8.03 16 26 C 0.08 0.99 10.80 59.85 0.65 1.63 16 27 H 0.08 0.88 6.60 -51.93 -0.34 0.54 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 6.37 -51.93 -0.33 0.15 16 30 H 0.11 0.33 6.19 -51.93 -0.32 0.01 16 31 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.49 6.26 -51.93 -0.33 0.16 16 33 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 34 H 0.06 0.56 6.13 -51.93 -0.32 0.24 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.42 6.95 -51.93 -0.36 1.05 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -34.63 355.60 -7.56 -42.19 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.48 Total: -3.59 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.48 Total: -4.86 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 1.07 Total: -55.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.63 -7.56 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340074607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.381 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds