Wall clock time and date at job start Tue Mar 31 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47319 * 2 1 4 4 C 1.53004 * 109.47156 * 240.00043 * 2 1 3 5 5 C 1.47200 * 109.47116 * 174.99749 * 4 2 1 6 6 N 3.43552 * 154.82421 * 248.43387 * 2 1 3 7 7 N 1.46898 * 109.47278 * 120.00075 * 2 1 3 8 8 C 1.46901 * 110.99797 * 58.95261 * 7 2 1 9 9 C 1.38575 * 111.00299 * 295.00235 * 7 2 1 10 10 N 1.31221 * 126.47754 * 87.15919 * 9 7 2 11 11 N 1.28520 * 109.85974 * 179.97438 * 10 9 7 12 12 C 1.30289 * 110.05836 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.34893 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.46869 * 300.02352 * 13 12 11 16 16 C 1.52999 * 109.47334 * 60.02351 * 13 12 11 17 17 C 1.50696 * 109.47159 * 175.00263 * 16 13 12 18 18 H 1.07991 * 120.00160 * 359.97438 * 17 16 13 19 19 C 1.37886 * 119.99782 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47242 * 60.00045 * 21 19 17 23 23 H 1.48507 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47230 * 299.99860 * 21 19 17 25 25 N 1.36453 * 126.47380 * 266.85805 * 9 7 2 26 26 C 1.46500 * 127.13567 * 0.02674 * 25 9 7 27 27 H 1.09004 * 109.47550 * 299.99772 * 1 2 3 28 28 H 1.09001 * 109.47322 * 59.99884 * 1 2 3 29 29 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47032 * 294.99974 * 4 2 1 31 31 H 1.08997 * 109.47253 * 55.00243 * 4 2 1 32 32 H 1.08999 * 109.47100 * 60.75636 * 8 7 2 33 33 H 1.09003 * 109.47251 * 180.75244 * 8 7 2 34 34 H 1.08992 * 109.47481 * 300.75128 * 8 7 2 35 35 H 1.09002 * 109.46991 * 60.00017 * 15 13 12 36 36 H 1.08994 * 109.46524 * 179.97438 * 15 13 12 37 37 H 1.08996 * 109.46888 * 299.99715 * 15 13 12 38 38 H 1.09002 * 109.46903 * 295.00534 * 16 13 12 39 39 H 1.08996 * 109.47267 * 54.99678 * 16 13 12 40 40 H 0.96999 * 120.00012 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46892 * 95.75592 * 26 25 9 42 42 H 1.08999 * 109.47591 * 215.75654 * 26 25 9 43 43 H 1.09005 * 109.47619 * 335.75996 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5070 -0.6173 -1.3113 6 7 4.6391 -0.5372 -1.3591 7 7 2.0196 -0.6925 1.1994 8 6 1.5282 -2.0761 1.2459 9 6 1.6697 -0.0024 2.3490 10 7 0.5485 -0.1224 3.0201 11 7 0.5597 0.6676 4.0338 12 6 1.6790 1.3335 4.0690 13 6 2.0766 2.3582 5.1001 14 1 3.0690 2.7435 4.8656 15 6 1.0677 3.5085 5.0913 16 6 2.0962 1.7076 6.4847 17 6 2.6114 2.6974 7.4976 18 1 2.8966 3.6909 7.1850 19 6 2.7194 2.3340 8.8233 20 7 2.3725 1.1239 9.2038 21 14 3.3586 3.5607 10.0787 22 1 2.4710 4.7511 10.1041 23 1 3.3775 2.9293 11.4226 24 1 4.7348 3.9773 9.7075 25 7 2.4283 0.9262 3.0003 26 6 3.7665 1.3928 2.6293 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7516 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 1.8873 -2.6187 0.3714 33 1 1.8946 -2.5616 2.1504 34 1 0.4383 -2.0747 1.2504 35 1 0.0754 3.1232 5.3258 36 1 1.3551 4.2494 5.8373 37 1 1.0538 3.9720 4.1049 38 1 1.0860 1.4017 6.7567 39 1 2.7477 0.8339 6.4664 40 1 2.4489 0.8682 10.1364 41 1 3.6830 2.3114 2.0485 42 1 4.3475 1.5848 3.5313 43 1 4.2649 0.6293 2.0318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340074607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:19 Heat of formation + Delta-G solvation = 86.922053 kcal Electronic energy + Delta-G solvation = -23608.891993 eV Core-core repulsion = 20304.090758 eV Total energy + Delta-G solvation = -3304.801235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.175 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.00778 -39.90157 -37.37065 -36.95094 -35.82280 -34.31031 -33.17456 -30.09609 -29.13029 -28.79088 -28.49085 -27.23000 -25.90214 -23.68741 -23.12091 -21.15142 -20.58929 -18.63711 -18.57226 -18.22921 -17.66388 -17.10682 -16.49024 -16.16055 -15.82022 -15.12248 -15.01357 -14.85506 -14.75264 -14.44472 -14.21342 -13.89186 -13.83787 -13.59087 -13.39877 -13.12084 -12.97980 -12.90353 -12.82924 -12.71821 -12.48954 -12.41298 -12.29058 -12.18880 -11.98644 -11.79483 -11.52192 -11.44914 -11.18568 -11.05499 -10.54071 -10.25956 -9.49660 -8.16451 -6.28374 0.76117 1.27932 1.43802 1.46984 1.54367 1.82429 1.90195 1.97958 2.43641 2.67775 3.15674 3.17530 3.46157 3.69060 3.79470 3.99096 4.04755 4.19065 4.24114 4.29179 4.33092 4.42863 4.52669 4.54104 4.62591 4.69463 4.73449 4.82651 4.89653 4.92317 5.07773 5.10173 5.11092 5.18377 5.37901 5.41252 5.45222 5.56144 5.69915 5.71371 5.83475 6.19341 6.23041 6.75848 6.87409 7.40905 7.77847 8.95869 Molecular weight = 291.18amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.003507 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.217196 B = 7981.499497 C = 8255.872868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.084 0.916 4 C -0.011 4.011 5 C 0.238 3.762 6 N -0.500 5.500 7 N -0.462 5.462 8 C 0.027 3.973 9 C 0.342 3.658 10 N -0.337 5.337 11 N -0.326 5.326 12 C 0.200 3.800 13 C 0.007 3.993 14 H 0.092 0.908 15 C -0.116 4.116 16 C 0.051 3.949 17 C -0.531 4.531 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.263 1.263 25 N -0.474 5.474 26 C 0.076 3.924 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.120 0.880 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.063 0.937 38 H -0.009 1.009 39 H -0.024 1.024 40 H 0.262 0.738 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -1.350 -24.624 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.019 4.019 3 H 0.102 0.898 4 C -0.051 4.051 5 C -0.079 4.079 6 N -0.178 5.178 7 N -0.188 5.188 8 C -0.120 4.120 9 C -0.015 4.015 10 N -0.181 5.181 11 N -0.165 5.165 12 C -0.069 4.069 13 C -0.014 4.014 14 H 0.110 0.890 15 C -0.174 4.174 16 C 0.013 3.987 17 C -0.568 4.568 18 H 0.095 0.905 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.188 1.188 25 N -0.167 5.167 26 C -0.066 4.066 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.009 0.991 39 H -0.006 1.006 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.601 -1.857 -24.236 24.314 hybrid contribution 0.436 0.465 1.168 1.331 sum -0.165 -1.391 -23.068 23.111 Atomic orbital electron populations 1.22388 0.93821 1.04302 1.03167 1.21890 0.95236 0.98141 0.86637 0.89769 1.19760 0.79944 1.06255 0.99141 1.29547 0.95632 0.91626 0.91074 1.81262 1.15070 1.10613 1.10864 1.59160 1.58846 1.03507 0.97264 1.22571 1.00520 0.84835 1.04040 1.22569 0.88258 0.94224 0.96420 1.74450 1.18401 1.20385 1.04873 1.73937 1.19747 1.07718 1.15121 1.25289 0.89530 1.00836 0.91202 1.19744 1.00078 0.91313 0.90239 0.88971 1.21566 0.97691 0.96553 1.01570 1.18833 0.95006 0.94434 0.90400 1.21559 1.42893 0.99522 0.92871 0.90548 1.26016 0.95721 0.97069 1.01123 1.70145 1.49416 1.20829 1.17336 0.85479 0.79379 0.78827 0.77236 1.18798 1.21598 1.18786 1.46365 1.17038 1.32414 1.20843 1.22234 0.78835 1.02280 1.03239 0.94809 0.88271 0.90020 0.84004 0.81820 0.86210 0.93235 0.92238 0.93974 0.90877 0.91842 0.99066 1.00572 0.92963 0.88134 0.89109 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.49 71.98 0.61 -1.61 16 2 C 0.09 1.11 2.29 44.91 0.10 1.21 16 3 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 4 C -0.01 -0.05 5.00 28.79 0.14 0.09 16 5 C 0.24 3.36 15.15 89.44 1.35 4.71 16 6 N -0.50 -11.20 18.54 20.01 0.37 -10.83 16 7 N -0.46 -9.40 4.44 -706.82 -3.14 -12.55 16 8 C 0.03 0.46 8.48 127.69 1.08 1.54 16 9 C 0.34 10.43 5.96 260.11 1.55 11.98 16 10 N -0.34 -12.75 10.57 -58.01 -0.61 -13.36 16 11 N -0.33 -14.40 12.18 -49.54 -0.60 -15.01 16 12 C 0.20 7.98 6.58 137.64 0.91 8.89 16 13 C 0.01 0.30 2.71 -11.54 -0.03 0.27 16 14 H 0.09 3.37 7.10 -2.39 -0.02 3.35 16 15 C -0.12 -4.28 8.99 71.99 0.65 -3.63 16 16 C 0.05 2.76 4.43 29.85 0.13 2.90 16 17 C -0.53 -29.15 8.41 25.60 0.22 -28.94 16 18 H 0.08 3.83 7.06 -2.92 -0.02 3.81 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 20 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 21 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 N -0.47 -15.22 3.21 -538.18 -1.73 -16.95 16 26 C 0.08 1.77 10.80 127.77 1.38 3.15 16 27 H 0.03 0.74 6.60 -2.38 -0.02 0.73 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.85 6.37 -2.39 -0.02 0.83 16 30 H 0.14 -0.02 6.19 -2.39 -0.01 -0.04 16 31 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.12 1.02 6.26 -2.39 -0.01 1.01 16 33 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.06 1.03 6.13 -2.39 -0.01 1.01 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.69 6.95 -2.39 -0.02 2.68 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 2.17 7.51 -2.39 -0.02 2.16 16 43 H 0.10 2.16 8.10 -2.38 -0.02 2.14 16 Total: -1.00 -81.77 355.60 6.16 -75.61 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.01 Total: 4.44 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 8.56 Total: 0.93 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.43 Total: -126.63 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -81.77 6.16 -75.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340074607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.530 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds