Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 120.00091 * 2 1 4 4 H 1.08001 * 119.99506 * 202.34105 * 3 2 1 5 5 C 1.38805 * 120.00472 * 22.34111 * 3 2 1 6 6 N 1.31626 * 119.99662 * 11.35625 * 5 3 2 7 7 Si 1.86797 * 120.00369 * 191.35589 * 5 3 2 8 8 H 1.48500 * 109.47323 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47475 * 120.00020 * 7 5 3 10 10 H 1.48502 * 109.47089 * 239.99950 * 7 5 3 11 11 C 1.46502 * 119.99655 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47225 * 270.00255 * 11 2 1 13 13 C 1.52998 * 109.47111 * 180.02562 * 12 11 2 14 14 O 1.42909 * 109.46807 * 179.97438 * 13 12 11 15 15 C 1.35898 * 116.99379 * 179.97438 * 14 13 12 16 16 C 1.38730 * 120.06119 * 0.31941 * 15 14 13 17 17 C 1.38146 * 119.94246 * 180.25211 * 16 15 14 18 18 C 1.38264 * 120.05939 * 359.44770 * 17 16 15 19 19 C 1.50698 * 119.94610 * 180.27313 * 18 17 16 20 20 C 1.53003 * 109.46765 * 60.00551 * 19 18 17 21 21 C 1.53002 * 109.46974 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.47118 * 300.00275 * 19 18 17 23 23 C 1.38268 * 120.10826 * 0.25752 * 18 17 16 24 24 C 1.38147 * 120.05790 * 0.02562 * 23 18 17 25 25 H 1.08992 * 109.47134 * 274.21345 * 1 2 3 26 26 H 1.09002 * 109.46566 * 34.21117 * 1 2 3 27 27 H 1.09001 * 109.47131 * 154.20705 * 1 2 3 28 28 H 0.97002 * 119.99849 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47153 * 150.00315 * 11 2 1 30 30 H 1.09004 * 109.47331 * 30.00164 * 11 2 1 31 31 H 1.09003 * 109.47220 * 59.99539 * 12 11 2 32 32 H 1.09004 * 109.46892 * 300.00178 * 12 11 2 33 33 H 1.08998 * 109.47337 * 60.00016 * 13 12 11 34 34 H 1.08997 * 109.47048 * 299.99444 * 13 12 11 35 35 H 1.07998 * 120.02978 * 359.97438 * 16 15 14 36 36 H 1.08005 * 119.96957 * 179.72399 * 17 16 15 37 37 H 1.08994 * 109.47376 * 60.00117 * 20 19 18 38 38 H 1.09001 * 109.46511 * 179.97438 * 20 19 18 39 39 H 1.08993 * 109.46998 * 299.99529 * 20 19 18 40 40 H 1.09010 * 109.46778 * 60.00096 * 21 19 18 41 41 H 1.08993 * 109.47072 * 179.97438 * 21 19 18 42 42 H 1.08995 * 109.47197 * 300.00478 * 21 19 18 43 43 H 1.08993 * 109.47345 * 60.00042 * 22 19 18 44 44 H 1.09002 * 109.46581 * 180.02562 * 22 19 18 45 45 H 1.09000 * 109.46923 * 299.99649 * 22 19 18 46 46 H 1.07999 * 119.97329 * 180.02562 * 23 18 17 47 47 H 1.07997 * 120.03054 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5340 2.3429 0.4569 6 7 0.3843 2.2691 1.0936 7 14 2.3367 4.0047 0.1683 8 1 3.6144 3.8166 -0.5647 9 1 1.4269 4.8614 -0.6338 10 1 2.6075 4.6572 1.4746 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 6 3.2179 -3.0346 1.4438 14 8 3.4565 -3.4463 2.7914 15 6 4.1301 -4.6130 2.9699 16 6 4.5586 -5.3432 1.8709 17 6 5.2386 -6.5315 2.0551 18 6 5.5023 -6.9875 3.3335 19 6 6.2497 -8.2810 3.5315 20 6 7.6316 -8.1758 2.8834 21 6 6.4085 -8.5542 5.0285 22 6 5.4683 -9.4258 2.8836 23 6 5.0817 -6.2585 4.4305 24 6 4.3962 -5.0725 4.2516 25 1 -0.3633 0.0755 1.0248 26 1 -0.3632 0.8499 -0.5778 27 1 -0.3633 -0.9253 -0.4472 28 1 -0.0459 3.0776 1.4132 29 1 3.1499 -1.1387 -0.5133 30 1 1.6084 -2.0287 -0.5130 31 1 1.5000 -1.8399 1.9572 32 1 3.0415 -0.9500 1.9568 33 1 4.1703 -2.9041 0.9301 34 1 2.6291 -3.7946 0.9303 35 1 4.3568 -4.9852 0.8721 36 1 5.5684 -7.1025 1.1998 37 1 8.1883 -7.3603 3.3449 38 1 8.1724 -9.1113 3.0270 39 1 7.5189 -7.9810 1.8169 40 1 5.4240 -8.6289 5.4906 41 1 6.9486 -9.4900 5.1717 42 1 6.9653 -7.7385 5.4896 43 1 5.3555 -9.2310 1.8172 44 1 6.0087 -10.3615 3.0273 45 1 4.4838 -9.5007 3.3454 46 1 5.2892 -6.6165 5.4280 47 1 4.0682 -4.5032 5.1088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -12.090478 kcal Electronic energy + Delta-G solvation = -22653.452651 eV Core-core repulsion = 19415.605502 eV Total energy + Delta-G solvation = -3237.847149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 291.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31918 -38.57238 -36.08751 -35.47272 -32.51318 -31.26211 -30.35263 -28.85452 -27.64526 -27.50051 -26.00594 -25.47077 -22.90473 -22.72612 -21.36686 -20.18059 -19.33511 -18.10790 -16.74779 -16.01340 -15.84809 -15.72702 -14.78226 -14.72110 -14.51011 -14.11831 -13.79256 -13.72996 -13.47989 -13.20027 -12.97922 -12.77476 -12.52573 -12.50362 -12.19587 -11.97299 -11.85328 -11.53617 -11.29837 -11.18214 -10.99523 -10.90085 -10.82678 -10.76057 -10.61490 -10.44234 -10.35864 -10.03161 -9.89239 -9.73903 -9.01781 -8.54816 -8.00594 -6.77050 -5.71823 -3.17978 1.32470 1.42930 3.36779 3.42662 3.45758 3.47827 3.72909 4.40790 4.50557 4.51470 4.75047 4.85785 4.92205 5.06429 5.26413 5.28337 5.32473 5.34247 5.34960 5.41563 5.48018 5.48976 5.56861 5.60842 5.63467 5.65667 5.71540 5.80616 5.94695 5.98607 6.00926 6.04683 6.06033 6.27665 6.34133 6.38584 6.43960 6.58264 6.75351 6.80901 6.84049 7.06918 7.39826 7.61975 7.74821 7.82370 8.40752 9.24529 9.87368 10.36079 11.33430 Molecular weight = 291.19amu Principal moments of inertia in cm(-1) A = 0.034127 B = 0.002373 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.276695 B =11798.847103 C =11916.727948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.601 5.601 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.157 3.843 12 C -0.138 4.138 13 C 0.063 3.937 14 O -0.314 6.314 15 C 0.135 3.865 16 C -0.209 4.209 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.024 4.024 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.083 4.083 24 C -0.156 4.156 25 H 0.028 0.972 26 H 0.046 0.954 27 H -0.003 1.003 28 H 0.252 0.748 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.129 0.871 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -23.016 4.473 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.029 3.971 12 C -0.179 4.179 13 C -0.013 4.013 14 O -0.227 6.227 15 C 0.089 3.911 16 C -0.228 4.228 17 C -0.093 4.093 18 C -0.120 4.120 19 C -0.024 4.024 20 C -0.196 4.196 21 C -0.201 4.201 22 C -0.195 4.195 23 C -0.101 4.101 24 C -0.175 4.175 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.147 0.853 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.751 -22.712 4.641 25.553 hybrid contribution 0.350 0.968 -0.188 1.046 sum 11.101 -21.744 4.453 24.817 Atomic orbital electron populations 1.20819 0.82381 0.95618 0.99359 1.44002 1.02041 1.00624 1.85664 1.19267 0.98020 0.85329 1.35786 0.91262 1.25061 0.97726 0.98633 0.98391 1.70084 1.17869 1.26982 1.40388 0.86163 0.78638 0.84193 0.77432 1.20313 1.21610 1.21699 1.20711 0.95934 0.88432 0.91987 1.22432 0.99897 0.92976 1.02572 1.23042 0.99737 0.97981 0.80520 1.86171 1.70275 1.35480 1.30779 1.19165 0.91852 0.86093 0.94005 1.21292 1.05198 0.97822 0.98445 1.20715 0.96975 0.95011 0.96609 1.19622 1.02133 0.97114 0.93085 1.19400 0.94696 0.92290 0.96015 1.21896 0.95411 1.01627 1.00627 1.21962 1.01845 1.01492 0.94820 1.21893 0.99991 0.97036 1.00621 1.20943 0.96731 0.93574 0.98805 1.20480 1.03864 0.98076 0.95063 0.95329 0.93574 0.98470 0.93779 0.93678 0.94328 0.91731 0.90884 0.92455 0.92627 0.85409 0.86233 0.92494 0.92580 0.92514 0.92265 0.92540 0.92249 0.92515 0.92582 0.92508 0.85316 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 9.01 59.85 0.54 4.63 16 2 N -0.60 -15.37 2.93 -181.12 -0.53 -15.90 16 3 C -0.25 -7.07 9.67 -15.06 -0.15 -7.22 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.84 10.59 55.49 0.59 -26.25 16 7 Si 0.91 22.08 29.57 -169.99 -5.03 17.06 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.16 3.21 5.71 -4.04 -0.02 3.19 16 12 C -0.14 -2.66 5.91 -26.73 -0.16 -2.82 16 13 C 0.06 0.98 4.74 37.16 0.18 1.15 16 14 O -0.31 -5.25 10.14 -19.42 -0.20 -5.45 16 15 C 0.14 1.96 6.69 -39.21 -0.26 1.70 16 16 C -0.21 -2.65 9.04 -39.43 -0.36 -3.00 16 17 C -0.08 -0.82 8.70 -39.61 -0.34 -1.16 16 18 C -0.12 -1.23 4.76 -104.60 -0.50 -1.72 16 19 C -0.02 -0.19 0.85 -155.66 -0.13 -0.32 16 20 C -0.14 -1.01 8.29 37.16 0.31 -0.71 16 21 C -0.14 -0.99 7.13 37.16 0.26 -0.73 16 22 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 23 C -0.08 -0.89 8.97 -39.60 -0.36 -1.25 16 24 C -0.16 -2.02 9.99 -39.43 -0.39 -2.42 16 25 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 26 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 27 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 30 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.06 0.82 7.65 -51.93 -0.40 0.43 16 34 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 35 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 36 H 0.12 1.07 7.09 -52.48 -0.37 0.70 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 40 H 0.06 0.40 7.51 -51.92 -0.39 0.01 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 43 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.13 1.11 5.89 -52.49 -0.31 0.80 16 47 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -30.58 371.35 -9.01 -39.59 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.27 Total: -3.19 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.16 Total: -11.46 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.06 Total: -42.14 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.20 Total: -5.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.58 -9.01 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.497 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds