Wall clock time and date at job start Tue Mar 31 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47352 * 2 1 4 4 C 1.52999 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47337 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99892 * 270.00275 * 5 4 3 7 7 H 1.08002 * 120.00024 * 146.31897 * 6 5 4 8 8 C 1.38805 * 119.99721 * 326.31446 * 6 5 4 9 9 N 1.31619 * 120.00480 * 336.46816 * 8 6 5 10 10 Si 1.86808 * 119.99801 * 156.47263 * 8 6 5 11 11 H 1.48494 * 109.47446 * 59.99758 * 10 8 6 12 12 H 1.48501 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46772 * 299.99643 * 10 8 6 14 14 C 1.46499 * 119.99908 * 89.99647 * 5 4 3 15 15 H 1.08991 * 109.47473 * 353.82207 * 14 5 4 16 16 C 1.53001 * 109.47048 * 113.82564 * 14 5 4 17 17 C 1.53003 * 109.47019 * 233.81846 * 14 5 4 18 18 C 1.50703 * 109.47211 * 65.16602 * 17 14 5 19 19 C 1.38287 * 119.97532 * 89.99448 * 18 17 14 20 20 C 1.38244 * 120.10901 * 179.97438 * 19 18 17 21 21 C 1.38161 * 120.06044 * 0.02562 * 20 19 18 22 22 C 1.38714 * 119.94074 * 0.02562 * 21 20 19 23 23 O 1.35899 * 120.05346 * 180.02562 * 22 21 20 24 24 C 1.42894 * 117.00286 * 359.97438 * 23 22 21 25 25 C 1.38118 * 119.96665 * 269.72517 * 18 17 14 26 26 H 1.08997 * 109.47461 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47077 * 300.00138 * 1 2 3 28 28 H 1.09000 * 109.46931 * 59.99640 * 1 2 3 29 29 H 1.09004 * 109.47077 * 239.99861 * 2 1 3 30 30 H 1.09004 * 109.47069 * 119.99860 * 2 1 3 31 31 H 1.09004 * 109.47143 * 59.99902 * 3 2 1 32 32 H 1.09000 * 109.47396 * 300.00076 * 3 2 1 33 33 H 1.09004 * 109.47069 * 299.99860 * 4 3 2 34 34 H 1.08997 * 109.46717 * 59.99725 * 4 3 2 35 35 H 0.97006 * 120.00196 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47536 * 185.64388 * 16 14 5 37 37 H 1.09002 * 109.46865 * 305.63976 * 16 14 5 38 38 H 1.09000 * 109.47221 * 65.63415 * 16 14 5 39 39 H 1.09008 * 109.46920 * 185.16052 * 17 14 5 40 40 H 1.08990 * 109.47612 * 305.16037 * 17 14 5 41 41 H 1.07995 * 119.94528 * 359.97438 * 19 18 17 42 42 H 1.07999 * 119.96660 * 180.02562 * 20 19 18 43 43 H 1.07997 * 120.02816 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.47451 * 300.00446 * 24 23 22 45 45 H 1.09004 * 109.46898 * 60.00209 * 24 23 22 46 46 H 1.09000 * 109.47276 * 179.97438 * 24 23 22 47 47 H 1.08006 * 120.03280 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4695 -1.1844 7 1 4.1128 4.5325 -1.2626 8 6 4.7430 2.7580 -2.2856 9 7 5.3856 1.6221 -2.1152 10 14 4.4446 3.4128 -4.0095 11 1 5.0869 4.7440 -4.1515 12 1 5.0250 2.4739 -5.0029 13 1 2.9838 3.5404 -4.2445 14 6 4.3020 3.5139 1.2703 15 1 3.9630 2.8877 2.0954 16 6 5.7993 3.7901 1.4214 17 6 3.5351 4.8377 1.2862 18 6 2.0539 4.5606 1.2650 19 6 1.3619 4.4115 2.4530 20 6 0.0030 4.1577 2.4368 21 6 -0.6670 4.0519 1.2332 22 6 0.0252 4.2000 0.0402 23 8 -0.6317 4.0968 -1.1451 24 6 -2.0351 3.8341 -1.0883 25 6 1.3878 4.4612 0.0592 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9288 0.8909 34 1 3.9337 0.9285 -0.8891 35 1 5.7039 1.1246 -2.8848 36 1 5.9932 4.2124 2.4074 37 1 6.3537 2.8583 1.3099 38 1 6.1177 4.4963 0.6546 39 1 3.7879 5.3932 2.1894 40 1 3.8073 5.4259 0.4099 41 1 1.8838 4.4935 3.3949 42 1 -0.5352 4.0421 3.3659 43 1 -1.7286 3.8540 1.2211 44 1 -2.2073 2.8882 -0.5748 45 1 -2.5336 4.6377 -0.5463 46 1 -2.4352 3.7765 -2.1006 47 1 1.9278 4.5824 -0.8683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256168708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:14 Heat of formation + Delta-G solvation = -11.035502 kcal Electronic energy + Delta-G solvation = -25388.578649 eV Core-core repulsion = 22150.777248 eV Total energy + Delta-G solvation = -3237.801401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 291.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76421 -37.70642 -36.20761 -34.25977 -32.54935 -30.84888 -30.14514 -29.43263 -27.27840 -27.07897 -25.57339 -24.22049 -22.16514 -21.84959 -20.82503 -20.02109 -19.40225 -17.34586 -16.10362 -15.80605 -15.52923 -15.41737 -14.97159 -14.45807 -14.16260 -13.80221 -13.49939 -13.39634 -13.17636 -12.77198 -12.67720 -12.20657 -12.06386 -11.90851 -11.70844 -11.40704 -11.30612 -11.08217 -11.03246 -10.77884 -10.75923 -10.63864 -10.60551 -10.38730 -10.16333 -10.05744 -9.98257 -9.76861 -9.40437 -9.26430 -8.36796 -8.12866 -7.71410 -6.46214 -5.66258 -3.18738 1.86604 1.96248 3.43504 3.49391 3.54043 3.63202 4.28904 4.56890 5.10378 5.25856 5.26716 5.30265 5.35284 5.45621 5.52808 5.59327 5.62789 5.71803 5.80868 5.83661 5.91153 6.09260 6.12601 6.23218 6.28716 6.34501 6.37833 6.51849 6.58610 6.60958 6.62479 6.69414 6.75933 6.80685 6.85580 6.87883 7.02834 7.10379 7.11305 7.18381 7.35287 7.41440 7.49026 7.85795 7.89328 7.96996 8.61341 9.31237 9.96513 10.53061 11.32526 Molecular weight = 291.19amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.007361 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.155696 B = 3803.005398 C = 4276.348698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.145 3.855 5 N -0.574 5.574 6 C -0.244 4.244 7 H 0.061 0.939 8 C 0.010 3.990 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.176 3.824 15 H 0.047 0.953 16 C -0.149 4.149 17 C -0.094 4.094 18 C -0.014 4.014 19 C -0.163 4.163 20 C -0.091 4.091 21 C -0.223 4.223 22 C 0.123 3.877 23 O -0.315 6.315 24 C 0.031 3.969 25 C -0.113 4.113 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 2.630 7.267 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.169 4.169 4 C 0.019 3.981 5 N -0.293 5.293 6 C -0.374 4.374 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.219 1.219 13 H -0.209 1.209 14 C 0.068 3.932 15 H 0.066 0.934 16 C -0.209 4.209 17 C -0.133 4.133 18 C -0.014 4.014 19 C -0.182 4.182 20 C -0.109 4.109 21 C -0.242 4.242 22 C 0.078 3.922 23 O -0.229 6.229 24 C -0.064 4.064 25 C -0.131 4.131 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.919 2.526 6.945 13.185 hybrid contribution -0.521 0.097 -0.820 0.976 sum -11.440 2.624 6.126 13.240 Atomic orbital electron populations 1.21729 0.97293 0.99993 1.01145 1.21480 0.94468 0.99154 1.00857 1.22236 1.00152 0.93595 1.00912 1.20999 0.89486 0.86362 1.01243 1.43822 1.73928 1.11461 1.00110 1.18842 1.37724 0.93355 0.87445 0.92173 1.24969 0.97560 0.97957 0.98427 1.69985 1.36864 1.16984 1.29113 0.86639 0.78386 0.78136 0.85344 1.20972 1.21898 1.20861 1.20314 0.91990 0.91240 0.89643 0.93438 1.22155 0.98543 1.01604 0.98567 1.21140 0.90299 1.00209 1.01673 1.19616 0.95628 0.94606 0.91566 1.20871 0.94146 1.05497 0.97658 1.20683 0.94465 0.99200 0.96595 1.20993 0.99645 1.11018 0.92548 1.19045 0.92288 0.96897 0.83961 1.86118 1.21807 1.86653 1.28320 1.22934 0.80177 1.00100 1.03232 1.20517 0.90374 1.02526 0.99696 0.93990 0.93502 0.93292 0.92652 0.93266 0.93782 0.92446 0.96757 0.88545 0.93813 0.95231 0.92970 0.92666 0.92358 0.90406 0.86851 0.86969 0.86715 0.93050 0.93297 0.88871 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.12 -2.17 5.93 -26.73 -0.16 -2.33 16 3 C -0.13 -2.65 4.37 -26.73 -0.12 -2.77 16 4 C 0.15 3.37 5.25 -4.04 -0.02 3.35 16 5 N -0.57 -13.30 1.81 -165.67 -0.30 -13.60 16 6 C -0.24 -6.22 7.35 -15.06 -0.11 -6.33 16 7 H 0.06 1.54 6.10 -52.49 -0.32 1.22 16 8 C 0.01 0.28 4.94 -17.43 -0.09 0.20 16 9 N -0.89 -24.99 11.33 55.49 0.63 -24.37 16 10 Si 0.89 21.56 29.61 -169.99 -5.03 16.53 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 14 C 0.18 3.52 2.73 -67.93 -0.19 3.33 16 15 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 16 C -0.15 -2.91 9.18 37.16 0.34 -2.57 16 17 C -0.09 -1.68 4.67 -27.88 -0.13 -1.81 16 18 C -0.01 -0.25 4.11 -104.65 -0.43 -0.68 16 19 C -0.16 -2.55 9.70 -39.56 -0.38 -2.93 16 20 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 21 C -0.22 -3.36 9.04 -39.43 -0.36 -3.72 16 22 C 0.12 2.14 6.69 -39.21 -0.26 1.88 16 23 O -0.32 -5.38 10.50 -19.42 -0.20 -5.59 16 24 C 0.03 0.37 9.81 101.05 0.99 1.36 16 25 C -0.11 -2.15 6.78 -39.43 -0.27 -2.41 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.90 6.75 -51.93 -0.35 0.55 16 32 H 0.06 1.32 7.58 -51.93 -0.39 0.92 16 33 H 0.01 0.32 7.98 -51.93 -0.41 -0.09 16 34 H 0.10 2.56 5.32 -51.93 -0.28 2.28 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.14 7.96 -51.93 -0.41 0.73 16 39 H 0.06 0.90 8.09 -51.92 -0.42 0.48 16 40 H 0.08 1.50 6.49 -51.93 -0.34 1.16 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.45 6.30 -52.49 -0.33 1.12 16 44 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 45 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.14 3.01 6.63 -52.48 -0.35 2.66 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -28.05 366.97 -8.75 -36.81 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.17 Total: 3.69 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.21 Total: -19.01 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.33 Total: -37.96 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.05 -8.75 -36.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256168708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.771 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds