Wall clock time and date at job start Tue Mar 31 2020 07:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47282 * 2 1 4 4 C 1.53001 * 109.47285 * 120.00360 * 2 1 3 5 5 H 1.09001 * 109.47530 * 198.85948 * 4 2 1 6 6 N 1.46904 * 109.46806 * 318.85102 * 4 2 1 7 7 C 1.46899 * 111.00437 * 253.35539 * 6 4 2 8 8 H 1.08999 * 109.46637 * 39.41925 * 7 6 4 9 9 C 1.53008 * 109.46776 * 279.42496 * 7 6 4 10 10 C 1.52994 * 109.47261 * 159.42072 * 7 6 4 11 11 C 1.50699 * 109.47330 * 296.18453 * 10 7 6 12 12 H 1.08005 * 119.99724 * 4.32839 * 11 10 7 13 13 C 1.37872 * 120.00058 * 184.33105 * 11 10 7 14 14 N 1.31520 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47171 * 89.99948 * 15 13 11 17 17 H 1.48507 * 109.47184 * 209.99802 * 15 13 11 18 18 H 1.48499 * 109.47006 * 329.99751 * 15 13 11 19 19 C 1.53003 * 109.47409 * 78.84955 * 4 2 1 20 20 H 1.08995 * 109.47047 * 187.23499 * 19 4 2 21 21 O 1.42898 * 109.47150 * 307.23718 * 19 4 2 22 22 C 1.50700 * 109.46756 * 67.23586 * 19 4 2 23 23 C 1.38239 * 119.99992 * 271.57628 * 22 19 4 24 24 C 1.38230 * 119.99755 * 179.78811 * 23 22 19 25 25 C 1.38238 * 120.00539 * 0.44391 * 24 23 22 26 26 C 1.38239 * 119.99320 * 359.80649 * 25 24 23 27 27 C 1.38228 * 120.00321 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47144 * 306.72199 * 1 2 3 29 29 H 1.08997 * 109.46855 * 66.72314 * 1 2 3 30 30 H 1.09003 * 109.47190 * 186.72546 * 1 2 3 31 31 H 1.09002 * 109.47061 * 239.99651 * 2 1 3 32 32 H 1.09008 * 109.47093 * 179.64720 * 3 2 1 33 33 H 1.08998 * 109.47656 * 299.64454 * 3 2 1 34 34 H 1.09001 * 109.47284 * 59.65054 * 3 2 1 35 35 H 1.00909 * 110.99679 * 129.39825 * 6 4 2 36 36 H 1.08999 * 109.46527 * 179.97438 * 9 7 6 37 37 H 1.08989 * 109.47355 * 59.99958 * 9 7 6 38 38 H 1.08996 * 109.46632 * 299.99415 * 9 7 6 39 39 H 1.09000 * 109.47015 * 56.18796 * 10 7 6 40 40 H 1.08998 * 109.47262 * 176.18301 * 10 7 6 41 41 H 0.96995 * 120.00288 * 180.02562 * 14 13 11 42 42 H 0.96702 * 113.99596 * 73.37850 * 21 19 4 43 43 H 1.07993 * 119.99994 * 359.97438 * 23 22 19 44 44 H 1.08001 * 120.00222 * 180.27211 * 24 23 22 45 45 H 1.07994 * 120.00668 * 179.83723 * 25 24 23 46 46 H 1.08003 * 119.99889 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.00193 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.0780 -0.4429 1.4313 6 7 1.2200 -0.3367 2.4058 7 6 1.9576 0.5692 3.2963 8 1 2.5392 1.2715 2.6992 9 6 2.8987 -0.2451 4.1864 10 6 0.9683 1.3412 4.1716 11 6 0.1027 2.2150 3.3008 12 1 0.1961 2.1676 2.2259 13 6 -0.8084 3.0749 3.8764 14 7 -0.9225 3.1323 5.1854 15 14 -1.8819 4.1575 2.7970 16 1 -3.1401 3.4392 2.4712 17 1 -2.2024 5.4146 3.5198 18 1 -1.1564 4.4794 1.5418 19 6 1.9471 -2.2339 1.0385 20 1 2.1876 -2.7460 1.9701 21 8 0.6202 -2.5779 0.6347 22 6 2.9223 -2.6528 -0.0314 23 6 2.5370 -2.6458 -1.3590 24 6 3.4329 -3.0259 -2.3406 25 6 4.7112 -3.4218 -1.9941 26 6 5.0948 -3.4338 -0.6660 27 6 4.2004 -3.0494 0.3152 28 1 -0.3633 0.6145 0.8237 29 1 -0.3633 0.4061 -0.9440 30 1 -0.3634 -1.0206 0.1204 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0063 33 1 1.6820 1.9545 -0.8931 34 1 1.6716 1.9581 0.8868 35 1 0.8959 -1.1510 2.9060 36 1 3.4463 0.4273 4.8469 37 1 3.6034 -0.7949 3.5628 38 1 2.3169 -0.9473 4.7834 39 1 0.3406 0.6373 4.7181 40 1 1.5173 1.9631 4.8787 41 1 -1.5637 3.7371 5.5903 42 1 0.4094 -2.3297 -0.2759 43 1 1.5370 -2.3405 -1.6294 44 1 3.1333 -3.0162 -3.3782 45 1 5.4103 -3.7213 -2.7608 46 1 6.0937 -3.7427 -0.3952 47 1 4.5000 -3.0591 1.3528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839601607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:05 Heat of formation + Delta-G solvation = -31.909566 kcal Electronic energy + Delta-G solvation = -24751.686375 eV Core-core repulsion = 21512.979807 eV Total energy + Delta-G solvation = -3238.706569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 291.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28668 -38.14611 -36.00884 -33.99839 -32.44714 -31.79829 -31.01157 -29.82971 -27.19289 -26.77837 -26.37876 -23.40652 -22.97804 -22.59507 -21.29972 -19.60215 -19.14680 -17.96975 -16.44957 -15.96952 -15.71178 -15.50667 -14.81442 -14.55900 -14.33767 -14.11035 -13.68849 -13.39901 -13.16860 -13.04507 -12.92799 -12.53074 -12.29838 -12.12763 -11.75052 -11.61687 -11.52536 -11.38489 -11.24996 -11.11523 -11.08038 -10.71350 -10.57355 -10.40955 -10.31320 -10.21420 -9.95146 -9.50211 -9.12618 -9.06655 -8.85422 -8.76585 -8.20151 -7.43048 -5.82693 -3.79482 1.15821 1.21721 3.42604 3.48640 3.51721 3.58313 4.33537 4.52337 4.60863 4.66951 4.79108 4.90629 5.02743 5.05096 5.16520 5.31261 5.40487 5.53062 5.54916 5.68612 5.72401 5.77675 5.80396 5.86348 5.90988 6.05018 6.06158 6.20006 6.25156 6.28142 6.32348 6.40412 6.43396 6.54200 6.62259 6.64922 6.67977 6.80175 6.95137 7.09070 7.30096 7.59001 7.69048 7.79009 8.09713 8.16266 8.27402 8.67566 9.27611 9.81738 11.29681 Molecular weight = 291.19amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.004435 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.706980 B = 6312.528368 C = 6886.213238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.150 4.150 4 C 0.069 3.931 5 H 0.055 0.945 6 N -0.645 5.645 7 C 0.087 3.913 8 H 0.066 0.934 9 C -0.182 4.182 10 C 0.033 3.967 11 C -0.484 4.484 12 H 0.066 0.934 13 C 0.049 3.951 14 N -0.905 5.905 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.292 1.292 18 H -0.276 1.276 19 C 0.137 3.863 20 H 0.101 0.899 21 O -0.545 6.545 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.090 0.910 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.335 0.665 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.050 0.950 39 H 0.012 0.988 40 H 0.018 0.982 41 H 0.256 0.744 42 H 0.374 0.626 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -13.120 -13.199 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.041 4.041 5 H 0.073 0.927 6 N -0.275 5.275 7 C -0.022 4.022 8 H 0.084 0.916 9 C -0.241 4.241 10 C -0.004 4.004 11 C -0.523 4.523 12 H 0.084 0.916 13 C -0.150 4.150 14 N -0.547 5.547 15 Si 0.714 3.286 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.201 1.201 19 C 0.077 3.923 20 H 0.119 0.881 21 O -0.354 6.354 22 C -0.105 4.105 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.130 4.130 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.226 0.774 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.220 -12.725 -12.794 20.737 hybrid contribution 0.206 0.291 -0.652 0.743 sum 10.426 -12.433 -13.445 21.073 Atomic orbital electron populations 1.22097 0.94188 1.03393 1.01471 1.21167 0.97309 0.96163 0.95645 1.21914 0.99240 0.96616 1.02901 1.22174 0.96238 0.91666 0.94064 0.92720 1.60555 1.38072 1.19667 1.09206 1.21949 0.93992 0.93247 0.93048 0.91573 1.22618 1.00137 1.00766 1.00605 1.19095 0.93144 0.94187 0.93956 1.21230 1.18323 1.19228 0.93506 0.91630 1.25005 0.97663 0.97592 0.94703 1.69966 1.36701 1.38846 1.09147 0.86701 0.81189 0.80060 0.80633 1.20941 1.21777 1.20064 1.21322 0.80878 0.95155 0.94970 0.88130 1.86672 1.29453 1.84263 1.35034 1.20611 0.95843 0.98804 0.95291 1.20893 0.99821 0.99973 0.92410 1.21103 0.93856 0.99235 0.99241 1.21142 0.96439 1.00445 0.96293 1.21129 0.99442 0.99941 0.93077 1.20986 0.93154 0.99199 0.99654 0.89126 0.95290 0.91645 0.92644 0.94318 0.93796 0.90021 0.84574 0.92664 0.94653 0.93116 0.96946 0.96384 0.93462 0.77427 0.86006 0.86022 0.86219 0.86097 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.24 37.16 0.31 -2.13 16 2 C -0.08 -1.22 2.37 -90.62 -0.22 -1.43 16 3 C -0.15 -2.40 8.75 37.15 0.33 -2.08 16 4 C 0.07 1.01 1.49 -67.71 -0.10 0.91 16 5 H 0.05 0.83 6.80 -51.93 -0.35 0.48 16 6 N -0.64 -11.33 4.42 -99.73 -0.44 -11.77 16 7 C 0.09 1.69 2.13 -67.71 -0.14 1.55 16 8 H 0.07 1.34 6.58 -51.93 -0.34 1.00 16 9 C -0.18 -3.00 9.14 37.16 0.34 -2.66 16 10 C 0.03 0.84 4.66 -27.89 -0.13 0.71 16 11 C -0.48 -13.24 8.81 -34.44 -0.30 -13.54 16 12 H 0.07 1.75 5.34 -52.48 -0.28 1.47 16 13 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 14 N -0.91 -27.43 13.29 55.43 0.74 -26.69 16 15 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.14 1.74 2.78 -27.88 -0.08 1.66 16 20 H 0.10 1.28 7.99 -51.93 -0.42 0.86 16 21 O -0.54 -7.34 11.44 -35.23 -0.40 -7.74 16 22 C -0.10 -1.20 4.75 -104.62 -0.50 -1.70 16 23 C -0.11 -1.19 7.48 -39.58 -0.30 -1.48 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.20 9.69 -39.59 -0.38 -1.58 16 28 H 0.09 1.80 6.65 -51.93 -0.35 1.45 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.95 4.44 -51.93 -0.23 0.72 16 31 H 0.06 0.72 5.00 -51.93 -0.26 0.46 16 32 H 0.04 0.57 8.13 -51.92 -0.42 0.15 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.58 5.59 -51.93 -0.29 1.29 16 35 H 0.34 5.89 7.88 -39.29 -0.31 5.58 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.50 7.50 -51.94 -0.39 0.11 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.37 4.27 4.42 45.56 0.20 4.48 16 43 H 0.12 1.14 5.72 -52.49 -0.30 0.84 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -30.17 357.35 -9.31 -39.48 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.10 Total: 9.26 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.47 Total: -25.00 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.30 Total: -38.46 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.40 Total: -7.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.17 -9.31 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839601607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.574 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds