Wall clock time and date at job start Tue Mar 31 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39625 * 120.15442 * 333.73623 * 3 2 1 5 5 C 1.37950 * 119.84728 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.14984 * 0.02878 * 5 4 3 7 7 S 1.76197 * 119.84876 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40693 * 203.54150 * 7 6 5 9 9 O 1.42100 * 106.40002 * 336.45827 * 7 6 5 10 10 N 1.65600 * 107.22141 * 89.99702 * 7 6 5 11 11 C 1.36933 * 119.99817 * 270.00352 * 10 7 6 12 12 H 1.08002 * 120.00146 * 129.74364 * 11 10 7 13 13 C 1.38813 * 120.00083 * 309.74068 * 11 10 7 14 14 N 1.31620 * 120.00240 * 334.66159 * 13 11 10 15 15 Si 1.86805 * 119.99812 * 154.66664 * 13 11 10 16 16 H 1.48494 * 109.47375 * 60.00012 * 15 13 11 17 17 H 1.48507 * 109.46970 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46977 * 299.99648 * 15 13 11 19 19 C 1.46500 * 120.00023 * 90.00088 * 10 7 6 20 20 C 1.52998 * 117.49837 * 183.82821 * 19 10 7 21 21 C 1.52997 * 117.49811 * 115.20570 * 19 10 7 22 22 C 1.38365 * 120.30593 * 0.23090 * 6 5 4 23 23 C 1.37948 * 120.15045 * 359.48568 * 22 6 5 24 24 H 1.07996 * 120.07736 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.92598 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99482 * 175.07752 * 14 13 11 27 27 H 1.08998 * 115.54632 * 329.53677 * 19 10 7 28 28 H 1.09002 * 117.49997 * 359.97438 * 20 19 10 29 29 H 1.08998 * 117.49989 * 145.02215 * 20 19 10 30 30 H 1.09005 * 117.49666 * 214.98157 * 21 19 10 31 31 H 1.09005 * 117.49833 * 359.97438 * 21 19 10 32 32 H 1.08000 * 119.92127 * 179.72618 * 22 6 5 33 33 H 1.07999 * 120.07526 * 180.25507 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.0817 0.5342 5 6 4.6494 -1.0742 0.5314 6 6 5.3374 0.0028 0.0014 7 16 7.0994 0.0044 0.0025 8 8 7.4996 1.3663 -0.0613 9 8 7.5007 -0.8756 1.0436 10 7 7.5912 -0.6945 -1.4159 11 6 7.7950 -2.0471 -1.4781 12 1 7.3424 -2.6256 -2.2698 13 6 8.5835 -2.6748 -0.5235 14 7 9.5124 -1.9941 0.1139 15 14 8.3265 -4.4857 -0.1438 16 1 8.5482 -5.2860 -1.3748 17 1 9.2876 -4.9128 0.9047 18 1 6.9390 -4.6976 0.3413 19 6 7.8081 0.1344 -2.6043 20 6 8.1748 -0.5800 -3.9066 21 6 9.2340 0.2254 -3.1514 22 6 4.6482 1.0811 -0.5248 23 6 3.2688 1.0842 -0.5337 24 1 2.7341 -1.9228 0.9487 25 1 5.1935 -1.9110 0.9440 26 1 10.0147 -2.4128 0.8303 27 1 7.1834 1.0247 -2.6768 28 1 8.2551 -1.6667 -3.8791 29 1 7.7913 -0.1599 -4.8363 30 1 9.5473 1.1755 -3.5843 31 1 10.0108 -0.3311 -2.6269 32 1 5.1915 1.9205 -0.9329 33 1 2.7321 1.9246 -0.9485 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063518921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:39 Heat of formation + Delta-G solvation = 5.948532 kcal Electronic energy + Delta-G solvation = -21126.326347 eV Core-core repulsion = 17859.089106 eV Total energy + Delta-G solvation = -3267.237242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34500 -38.68584 -37.65158 -37.60163 -36.13296 -35.00079 -32.61673 -32.37255 -32.14098 -26.75844 -25.32824 -23.81626 -22.98236 -22.18089 -20.65516 -20.04212 -19.23081 -17.89007 -17.66111 -17.01760 -16.65695 -15.89552 -15.72411 -15.44779 -15.18741 -15.08589 -14.97302 -14.54409 -14.03473 -13.98072 -13.76465 -13.50259 -13.39591 -13.10897 -12.71264 -12.47818 -12.46405 -12.26972 -12.17441 -12.08354 -11.96252 -11.56915 -11.38511 -10.91590 -10.53186 -10.27882 -10.08030 -9.25835 -8.36636 -6.07705 -0.65006 0.07767 0.28840 1.45728 1.54490 1.59543 1.64242 1.67158 2.39749 2.61927 2.65467 2.89780 3.05374 3.28512 3.53736 3.71368 3.86019 4.06281 4.28592 4.33491 4.39815 4.48627 4.55185 4.56545 4.80116 4.92945 4.96139 5.05411 5.11237 5.26704 5.35767 5.53547 5.66471 5.72165 5.91822 6.26490 6.35708 7.07644 7.49005 8.67023 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.006577 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.506336 B = 4256.207280 C = 4952.809753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.282 3.718 3 C 0.002 3.998 4 C -0.084 4.084 5 C -0.038 4.038 6 C -0.650 4.650 7 S 2.576 3.424 8 O -1.029 7.029 9 O -0.980 6.980 10 N -0.802 5.802 11 C -0.290 4.290 12 H 0.097 0.903 13 C 0.024 3.976 14 N -0.824 5.824 15 Si 0.963 3.037 16 H -0.254 1.254 17 H -0.291 1.291 18 H -0.260 1.260 19 C 0.067 3.933 20 C -0.153 4.153 21 C -0.197 4.197 22 C -0.045 4.045 23 C -0.080 4.080 24 H 0.163 0.837 25 H 0.138 0.862 26 H 0.275 0.725 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 1.378 -4.873 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.033 4.033 3 C -0.002 4.002 4 C -0.105 4.105 5 C -0.057 4.057 6 C -0.732 4.732 7 S 2.679 3.321 8 O -1.019 7.019 9 O -0.969 6.969 10 N -0.625 5.625 11 C -0.435 4.435 12 H 0.115 0.885 13 C -0.190 4.190 14 N -0.460 5.460 15 Si 0.786 3.214 16 H -0.178 1.178 17 H -0.217 1.217 18 H -0.184 1.184 19 C -0.040 4.040 20 C -0.191 4.191 21 C -0.237 4.237 22 C -0.064 4.064 23 C -0.101 4.101 24 H 0.180 0.820 25 H 0.155 0.845 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.631 1.908 -3.997 9.701 hybrid contribution 0.194 -0.794 0.578 1.001 sum -8.437 1.113 -3.419 9.171 Atomic orbital electron populations 1.81266 1.12662 1.08682 1.09407 1.25565 0.92270 0.92696 0.92750 1.16176 0.83790 0.97323 1.02873 1.21496 0.93489 0.97869 0.97629 1.20926 0.94458 0.96362 0.93994 1.32288 1.31195 1.01602 1.08147 1.08951 0.74639 0.72342 0.76208 1.93297 1.82774 1.38061 1.87776 1.93390 1.80684 1.65444 1.57387 1.52268 1.71020 1.14140 1.25028 1.19237 1.26478 0.82085 1.15721 0.88546 1.26497 0.91563 1.03756 0.97169 1.70004 1.15677 1.41294 1.19063 0.85445 0.78969 0.78415 0.78535 1.17785 1.21654 1.18448 1.21635 0.98598 0.96281 0.87536 1.23180 1.01749 0.99903 0.94301 1.23196 0.93465 1.02193 1.04869 1.21025 0.94570 0.96192 0.94635 1.21531 0.93533 0.97694 0.97341 0.81984 0.84456 0.91542 0.85546 0.88803 0.86215 0.87430 0.91376 0.83253 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.11 18.54 19.00 0.35 -11.76 16 2 C 0.28 6.71 15.33 88.33 1.35 8.07 16 3 C 0.00 0.05 5.73 -21.36 -0.12 -0.08 16 4 C -0.08 -2.11 9.76 22.54 0.22 -1.89 16 5 C -0.04 -1.24 9.50 22.23 0.21 -1.03 16 6 C -0.65 -23.45 5.98 22.33 0.13 -23.32 16 7 S 2.58 118.89 5.45 -56.49 -0.31 118.58 16 8 O -1.03 -50.96 16.48 -128.00 -2.11 -53.07 16 9 O -0.98 -51.79 13.48 -128.00 -1.73 -53.51 16 10 N -0.80 -35.59 3.03 -322.95 -0.98 -36.57 16 11 C -0.29 -13.31 7.91 84.03 0.67 -12.65 16 12 H 0.10 4.07 7.31 -2.91 -0.02 4.05 16 13 C 0.02 1.19 3.98 84.86 0.34 1.53 16 14 N -0.82 -44.41 11.76 21.65 0.25 -44.15 16 15 Si 0.96 38.42 29.63 68.60 2.03 40.45 16 16 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 17 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 C 0.07 2.53 6.02 44.99 0.27 2.81 16 20 C -0.15 -4.80 9.82 30.59 0.30 -4.50 16 21 C -0.20 -7.15 10.35 30.59 0.32 -6.83 16 22 C -0.05 -1.33 9.50 22.23 0.21 -1.11 16 23 C -0.08 -1.83 9.76 22.54 0.22 -1.61 16 24 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 25 H 0.14 4.69 7.60 -2.91 -0.02 4.66 16 26 H 0.27 14.37 8.32 -92.71 -0.77 13.60 16 27 H 0.13 4.14 8.09 -2.39 -0.02 4.12 16 28 H 0.09 3.19 6.70 -2.39 -0.02 3.18 16 29 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.15 4.08 7.60 -2.91 -0.02 4.06 16 33 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -64.11 309.51 2.78 -61.33 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.14 Total: 19.32 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 4.12 Total: -40.62 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -0.37 Total: -92.49 kcal Atomic # 8 Polarization: -102.75 SS G_CDS: -3.84 Total: -106.58 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 118.89 SS G_CDS: -0.31 Total: 118.58 kcal Total: -64.11 2.78 -61.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.282 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds