Wall clock time and date at job start Tue Mar 31 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48503 * 109.46756 * 269.99224 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99730 * 3 2 1 6 6 H 1.48504 * 109.47125 * 149.99763 * 3 2 1 7 7 C 1.37873 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47293 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99859 * 180.02562 * 11 10 9 13 13 O 1.21571 * 120.00104 * 359.97438 * 12 11 10 14 14 C 1.47706 * 119.99813 * 180.02562 * 12 11 10 15 15 C 1.39993 * 119.96658 * 359.94778 * 14 12 11 16 16 C 1.37615 * 120.32635 * 180.02562 * 15 14 12 17 17 C 1.38782 * 120.10430 * 0.02768 * 16 15 14 18 18 O 1.35213 * 133.57243 * 180.02562 * 17 16 15 19 19 C 1.34517 * 108.24104 * 179.97438 * 18 17 16 20 20 S 1.76198 * 124.95107 * 180.02562 * 19 18 17 21 21 N 1.30903 * 110.09749 * 359.97438 * 19 18 17 22 22 C 1.36199 * 108.66419 * 359.97438 * 21 19 18 23 23 C 1.39225 * 133.53522 * 180.02562 * 22 21 19 24 24 H 0.97007 * 120.00072 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47423 * 59.99894 * 9 7 2 26 26 H 1.08999 * 109.47382 * 300.00573 * 9 7 2 27 27 H 1.09001 * 109.46998 * 60.00210 * 10 9 7 28 28 H 1.09004 * 109.47702 * 299.99986 * 10 9 7 29 29 H 0.96997 * 120.00052 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.83467 * 0.02562 * 15 14 12 31 31 H 1.08004 * 119.95107 * 180.02562 * 16 15 14 32 32 H 1.41000 * 100.00042 * 359.97272 * 20 19 18 33 33 H 1.08000 * 120.19951 * 359.67823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0023 11 7 5.4865 -2.6364 0.0022 12 6 6.1604 -3.8036 0.0026 13 8 5.5525 -4.8565 0.0035 14 6 7.6375 -3.8036 0.0032 15 6 8.3367 -2.5908 0.0021 16 6 9.7128 -2.5822 0.0021 17 6 10.4165 -3.7784 0.0025 18 8 11.7334 -4.0850 0.0030 19 6 11.8537 -5.4248 0.0038 20 16 13.3824 -6.3009 0.0053 21 7 10.6696 -5.9828 0.0043 22 6 9.7252 -5.0013 0.0045 23 6 8.3330 -5.0101 0.0055 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1498 0.8925 29 1 5.9715 -1.7964 0.0019 30 1 7.7934 -1.6574 0.0014 31 1 10.2461 -1.6430 0.0017 32 1 14.2853 -5.2180 0.0047 33 1 7.7956 -5.9469 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832022607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:23 Heat of formation + Delta-G solvation = 9.058919 kcal Electronic energy + Delta-G solvation = -19396.027734 eV Core-core repulsion = 16128.925368 eV Total energy + Delta-G solvation = -3267.102365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.61213 -39.89360 -37.69164 -35.24926 -35.07612 -32.89219 -31.33844 -30.67872 -29.70730 -25.85240 -24.34221 -23.83447 -22.34709 -20.96930 -20.85924 -19.07699 -18.42020 -17.88109 -17.33574 -16.97023 -16.58585 -15.71831 -15.12908 -14.81042 -14.60752 -14.34399 -14.15346 -13.62638 -13.52336 -13.28496 -12.65053 -12.62744 -12.22844 -12.15528 -11.95665 -11.52919 -11.25757 -10.93744 -10.45533 -10.37307 -10.01436 -9.97594 -9.72222 -9.36054 -9.17169 -8.69617 -8.60340 -8.37510 -6.13767 -4.14278 0.06719 0.16558 0.45608 1.19993 1.80689 2.47092 2.73016 3.22444 3.29585 3.30337 3.31597 3.59007 3.98305 4.22274 4.34588 4.54665 4.60584 4.64576 4.94482 5.18882 5.20880 5.58645 5.62355 5.78119 5.83605 5.97683 6.13537 6.14911 6.50194 6.61534 6.93460 7.06885 7.17649 7.62296 7.74919 8.36005 8.43032 8.90594 9.45907 10.99181 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.043608 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.925725 B =10775.694919 C =11397.174146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.553 3.447 13 O -0.535 6.535 14 C -0.124 4.124 15 C -0.059 4.059 16 C -0.097 4.097 17 C 0.031 3.969 18 O -0.216 6.216 19 C 0.224 3.776 20 S 0.069 5.931 21 N -0.437 5.437 22 C 0.021 3.979 23 C 0.006 3.994 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.395 0.605 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.013 -5.986 0.024 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.368 5.368 12 C 0.339 3.661 13 O -0.414 6.414 14 C -0.129 4.129 15 C -0.078 4.078 16 C -0.116 4.116 17 C -0.022 4.022 18 O -0.110 6.110 19 C -0.096 4.096 20 S 0.223 5.777 21 N -0.169 5.169 22 C -0.092 4.092 23 C -0.014 4.014 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.080 0.920 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 28.946 -7.939 0.029 30.015 hybrid contribution 0.567 3.374 -0.021 3.422 sum 29.513 -4.565 0.007 29.864 Atomic orbital electron populations 1.69904 1.06289 1.27080 1.50264 1.25007 0.94778 0.99160 0.94372 0.86751 0.80251 0.83566 0.78486 1.20223 1.21268 1.19081 1.20900 0.88567 0.94943 1.51783 0.90547 1.19806 0.98122 0.91212 0.96891 1.21596 0.75285 1.00377 1.02022 1.46250 1.09450 1.07501 1.73587 1.17948 0.86074 0.84594 0.77534 1.90797 1.69525 1.31088 1.49955 1.19973 0.94300 0.93143 1.05476 1.21234 0.92553 0.98122 0.95878 1.19759 0.92841 0.94516 1.04466 1.20487 0.80556 0.97418 1.03721 1.84694 1.26219 1.24401 1.75670 1.27533 1.00232 0.80003 1.01841 1.87699 0.90154 1.07076 1.92730 1.71072 0.96232 1.30738 1.18890 1.19702 0.94803 0.87949 1.06734 1.20441 0.89111 0.99339 0.92522 0.92518 0.95933 0.96360 0.91569 0.91537 0.76998 0.83331 0.83890 0.92043 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.61 16 10 C 0.13 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.72 -11.17 5.51 -61.29 -0.34 -11.51 16 12 C 0.55 8.84 7.77 -12.39 -0.10 8.75 16 13 O -0.54 -10.57 16.33 5.30 0.09 -10.49 16 14 C -0.12 -1.58 5.87 -104.99 -0.62 -2.20 16 15 C -0.06 -0.57 9.52 -39.15 -0.37 -0.94 16 16 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 17 C 0.03 0.36 7.42 -38.54 -0.29 0.07 16 18 O -0.22 -2.29 10.78 2.55 0.03 -2.27 16 19 C 0.22 2.32 8.59 52.37 0.45 2.77 16 20 S 0.07 0.41 26.28 -107.50 -2.83 -2.42 16 21 N -0.44 -5.63 11.39 -11.48 -0.13 -5.76 16 22 C 0.02 0.27 7.22 -84.72 -0.61 -0.34 16 23 C 0.01 0.08 9.64 -38.83 -0.37 -0.29 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 26 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.40 4.88 6.48 -40.82 -0.26 4.62 16 30 H 0.15 1.05 6.37 -52.49 -0.33 0.72 16 31 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.12 0.34 9.55 96.90 0.93 1.26 16 33 H 0.15 2.08 7.64 -52.49 -0.40 1.68 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -33.44 308.87 -6.99 -40.43 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -1.70 Total: 2.06 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.87 Total: -4.40 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.31 Total: -43.44 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.11 Total: -12.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.83 Total: -2.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.44 -6.99 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.490 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds