Wall clock time and date at job start Tue Mar 31 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48503 * 109.46756 * 269.99224 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99730 * 3 2 1 6 6 H 1.48504 * 109.47125 * 149.99763 * 3 2 1 7 7 C 1.37873 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47293 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99859 * 180.02562 * 11 10 9 13 13 O 1.21571 * 120.00104 * 359.97438 * 12 11 10 14 14 C 1.47706 * 119.99813 * 180.02562 * 12 11 10 15 15 C 1.39993 * 119.96658 * 359.94778 * 14 12 11 16 16 C 1.37615 * 120.32635 * 180.02562 * 15 14 12 17 17 C 1.38782 * 120.10430 * 0.02768 * 16 15 14 18 18 O 1.35213 * 133.57243 * 180.02562 * 17 16 15 19 19 C 1.34517 * 108.24104 * 179.97438 * 18 17 16 20 20 S 1.76198 * 124.95107 * 180.02562 * 19 18 17 21 21 N 1.30903 * 110.09749 * 359.97438 * 19 18 17 22 22 C 1.36199 * 108.66419 * 359.97438 * 21 19 18 23 23 C 1.39225 * 133.53522 * 180.02562 * 22 21 19 24 24 H 0.97007 * 120.00072 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47423 * 59.99894 * 9 7 2 26 26 H 1.08999 * 109.47382 * 300.00573 * 9 7 2 27 27 H 1.09001 * 109.46998 * 60.00210 * 10 9 7 28 28 H 1.09004 * 109.47702 * 299.99986 * 10 9 7 29 29 H 0.96997 * 120.00052 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.83467 * 0.02562 * 15 14 12 31 31 H 1.08004 * 119.95107 * 180.02562 * 16 15 14 32 32 H 1.41000 * 100.00042 * 359.97272 * 20 19 18 33 33 H 1.08000 * 120.19951 * 359.67823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0023 11 7 5.4865 -2.6364 0.0022 12 6 6.1604 -3.8036 0.0026 13 8 5.5525 -4.8565 0.0035 14 6 7.6375 -3.8036 0.0032 15 6 8.3367 -2.5908 0.0021 16 6 9.7128 -2.5822 0.0021 17 6 10.4165 -3.7784 0.0025 18 8 11.7334 -4.0850 0.0030 19 6 11.8537 -5.4248 0.0038 20 16 13.3824 -6.3009 0.0053 21 7 10.6696 -5.9828 0.0043 22 6 9.7252 -5.0013 0.0045 23 6 8.3330 -5.0101 0.0055 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6585 -3.1509 -0.8875 28 1 3.6579 -3.1498 0.8925 29 1 5.9715 -1.7964 0.0019 30 1 7.7934 -1.6574 0.0014 31 1 10.2461 -1.6430 0.0017 32 1 14.2853 -5.2180 0.0047 33 1 7.7956 -5.9469 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832022607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:23 Heat of formation + Delta-G solvation = -17.571105 kcal Electronic energy + Delta-G solvation = -19397.182498 eV Core-core repulsion = 16128.925368 eV Total energy + Delta-G solvation = -3268.257130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.41380 -41.11104 -38.68553 -36.72310 -36.01052 -34.81542 -32.57918 -31.81871 -30.91488 -27.32216 -25.54978 -24.77528 -23.21711 -22.65622 -22.09090 -19.86440 -19.39594 -18.94384 -18.74358 -18.14656 -17.43271 -17.00444 -16.55824 -16.20104 -15.71811 -15.49902 -15.11640 -15.04198 -14.87673 -14.51413 -14.19979 -13.62699 -13.32902 -13.06817 -12.98296 -12.91738 -12.47831 -12.21300 -12.14696 -11.76134 -11.72736 -11.49965 -11.13059 -10.76174 -10.69379 -10.19692 -9.92638 -9.03109 -8.27080 -6.34696 -0.62777 -0.55303 -0.48073 0.79997 1.01302 1.42179 1.45404 1.56357 1.64760 1.77618 2.07206 2.40019 2.56510 3.08219 3.14877 3.33554 3.58162 3.79552 3.91882 4.05643 4.33406 4.44988 4.45761 4.73680 4.77350 4.81846 4.93055 5.00366 5.13312 5.25321 5.41816 5.43814 5.64857 6.12132 6.24387 6.51676 6.73622 7.14931 7.29815 8.89673 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.043608 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.925725 B =10775.694919 C =11397.174146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.230 1.230 7 C -0.539 4.539 8 H 0.027 0.973 9 C -0.014 4.014 10 C 0.143 3.857 11 N -0.703 5.703 12 C 0.555 3.445 13 O -0.583 6.583 14 C -0.129 4.129 15 C -0.050 4.050 16 C -0.078 4.078 17 C 0.024 3.976 18 O -0.213 6.213 19 C 0.229 3.771 20 S 0.087 5.913 21 N -0.480 5.480 22 C 0.002 3.998 23 C -0.012 4.012 24 H 0.267 0.733 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.416 0.584 30 H 0.183 0.817 31 H 0.184 0.816 32 H 0.150 0.850 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.208 -3.118 0.044 33.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.153 1.153 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.051 4.051 10 C 0.019 3.981 11 N -0.355 5.355 12 C 0.343 3.657 13 O -0.464 6.464 14 C -0.134 4.134 15 C -0.069 4.069 16 C -0.096 4.096 17 C -0.029 4.029 18 O -0.107 6.107 19 C -0.090 4.090 20 S 0.241 5.759 21 N -0.213 5.213 22 C -0.111 4.111 23 C -0.033 4.033 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.254 0.746 30 H 0.200 0.800 31 H 0.201 0.799 32 H 0.113 0.887 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 33.196 -5.068 0.049 33.581 hybrid contribution -0.633 2.335 -0.030 2.419 sum 32.563 -2.733 0.018 32.678 Atomic orbital electron populations 1.70090 1.08711 1.28398 1.52052 1.26135 0.95713 1.04063 0.93714 0.85521 0.79858 0.77047 0.79331 1.19009 1.21641 1.15290 1.21263 0.91718 0.93308 1.51476 0.95442 1.19671 0.94296 0.92691 0.98467 1.21121 0.77758 0.98810 1.00373 1.45897 1.07644 1.08573 1.73392 1.18407 0.87471 0.83739 0.76111 1.90776 1.70838 1.32800 1.51965 1.19658 0.91942 0.94485 1.07282 1.21528 0.92941 0.97765 0.94622 1.20195 0.92462 0.95155 1.01835 1.20846 0.80773 0.97614 1.03681 1.84707 1.25744 1.24508 1.75705 1.28271 1.01151 0.80025 0.99595 1.87744 0.88654 1.08032 1.91496 1.71047 0.97304 1.31582 1.21396 1.19783 0.94702 0.89146 1.07431 1.20311 0.89651 0.99056 0.94268 0.92419 0.94032 0.94178 0.93448 0.93433 0.74565 0.80003 0.79870 0.88659 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 40.85 27.47 68.60 1.88 42.73 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 7 C -0.54 -30.10 9.66 25.60 0.25 -29.85 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.57 4.15 29.84 0.12 -0.45 16 10 C 0.14 5.59 5.61 86.38 0.48 6.08 16 11 N -0.70 -20.70 5.51 -466.10 -2.57 -23.27 16 12 C 0.55 17.66 7.77 86.75 0.67 18.33 16 13 O -0.58 -24.04 16.33 -3.94 -0.06 -24.10 16 14 C -0.13 -3.16 5.87 -20.10 -0.12 -3.28 16 15 C -0.05 -0.78 9.52 22.55 0.21 -0.56 16 16 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16 17 C 0.02 0.49 7.42 22.95 0.17 0.67 16 18 O -0.21 -3.97 10.78 -13.79 -0.15 -4.12 16 19 C 0.23 4.39 8.59 130.38 1.12 5.51 16 20 S 0.09 0.83 26.28 -56.49 -1.48 -0.65 16 21 N -0.48 -12.36 11.39 -304.40 -3.47 -15.83 16 22 C 0.00 0.04 7.22 39.25 0.28 0.33 16 23 C -0.01 -0.33 9.64 22.75 0.22 -0.11 16 24 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 25 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 26 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.42 8.65 6.48 -92.71 -0.60 8.05 16 30 H 0.18 1.57 6.37 -2.91 -0.02 1.55 16 31 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.15 0.30 9.55 73.80 0.70 1.01 16 33 H 0.13 4.03 7.64 -2.91 -0.02 4.00 16 Total: -1.00 -77.76 308.87 -0.21 -77.96 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.24 Total: 9.55 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.11 Total: -3.71 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -5.73 Total: -97.66 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.21 Total: -28.23 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.88 Total: 42.73 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -1.48 Total: -0.65 kcal Total: -77.76 -0.21 -77.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.393 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds