Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47144 * 300.00348 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00334 * 3 2 1 7 7 C 1.38817 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99810 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49155 * 180.02562 * 9 7 2 11 11 C 1.53942 * 86.11649 * 155.35949 * 10 9 7 12 12 N 1.46506 * 113.74123 * 137.95393 * 11 10 9 13 13 C 1.34777 * 120.00094 * 156.92481 * 12 11 10 14 14 O 1.21735 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.46425 * 120.00012 * 179.97438 * 13 12 11 16 16 C 1.35875 * 124.99225 * 179.77251 * 15 13 12 17 17 C 1.38727 * 115.20681 * 179.82511 * 16 15 13 18 18 O 1.36645 * 139.74868 * 180.08177 * 17 16 15 19 19 C 1.34069 * 109.73868 * 180.31485 * 18 17 16 20 20 C 1.34215 * 109.49379 * 359.97438 * 19 18 17 21 21 C 1.38034 * 113.37998 * 0.40882 * 17 16 15 22 22 S 1.75644 * 124.99679 * 0.02562 * 15 13 12 23 23 C 1.47815 * 134.45882 * 359.87006 * 9 7 2 24 24 H 0.96998 * 120.00507 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.76936 * 41.05872 * 10 9 7 26 26 H 1.09003 * 113.76718 * 269.66229 * 10 9 7 27 27 H 1.08997 * 113.74132 * 269.15159 * 11 10 9 28 28 H 0.96998 * 119.99613 * 336.92377 * 12 11 10 29 29 H 1.07996 * 122.40094 * 359.97405 * 16 15 13 30 30 H 1.08001 * 125.25247 * 179.97438 * 19 18 17 31 31 H 1.07996 * 126.51288 * 179.97438 * 20 19 18 32 32 H 1.08994 * 113.76694 * 90.37614 * 23 9 7 33 33 H 1.08999 * 113.83442 * 318.91324 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3471 -4.0830 0.6398 12 7 -0.3333 -5.2614 0.0969 13 6 -1.2732 -5.8932 0.8276 14 8 -1.5572 -5.4843 1.9385 15 6 -1.9536 -7.0707 0.2848 16 6 -2.9103 -7.7856 0.9327 17 6 -3.4223 -8.8639 0.2260 18 8 -4.3418 -9.8642 0.3713 19 6 -4.3593 -10.6268 -0.7313 20 6 -3.4670 -10.1554 -1.6162 21 6 -2.8522 -9.0219 -1.0212 22 16 -1.6486 -7.7704 -1.2972 23 6 -0.1058 -2.7571 0.0023 24 1 -0.4851 0.8400 0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8319 -4.2351 -0.9981 27 1 0.3595 -4.0640 1.7295 28 1 -0.1073 -5.5869 -0.7884 29 1 -3.2497 -7.5310 1.9259 30 1 -4.9936 -11.4875 -0.8839 31 1 -3.2559 -10.5615 -2.5943 32 1 -0.5318 -2.8718 -0.9943 33 1 -0.7184 -2.1403 0.6599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030945310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = 72.280506 kcal Electronic energy + Delta-G solvation = -19708.878368 eV Core-core repulsion = 16444.517497 eV Total energy + Delta-G solvation = -3264.360872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.75606 -39.68117 -37.70213 -36.00551 -33.64780 -32.80847 -31.86363 -29.05098 -27.41481 -24.89279 -24.80490 -23.28140 -22.44326 -20.90242 -20.13169 -19.42673 -18.79353 -16.91561 -16.81603 -16.48502 -16.02555 -15.65628 -15.09920 -15.00655 -14.59905 -14.24466 -13.82259 -13.48366 -13.10876 -12.78164 -12.34523 -12.31469 -11.95609 -11.50853 -11.49818 -11.26947 -10.90846 -10.82610 -10.53570 -10.46747 -10.08704 -9.85534 -9.57141 -8.83933 -8.75971 -8.51677 -8.30673 -6.95171 -5.79527 -3.13861 0.11427 0.98306 1.58328 1.85072 2.10432 2.34812 3.24009 3.33353 3.39460 3.44412 3.46527 4.28971 4.40744 4.47460 4.82568 4.87419 5.11197 5.22002 5.37179 5.45056 5.51161 5.60234 5.68787 5.89692 5.97008 6.15121 6.34311 6.49819 6.57230 6.63922 7.20247 7.29357 7.51531 7.69897 7.93662 8.31369 9.00327 9.66726 10.52215 11.37225 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.002947 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.552826 B = 9498.944953 C = 9662.033716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.706 5.706 13 C 0.587 3.413 14 O -0.524 6.524 15 C -0.218 4.218 16 C -0.030 4.030 17 C 0.004 3.996 18 O -0.164 6.164 19 C 0.013 3.987 20 C -0.178 4.178 21 C -0.225 4.225 22 S 0.203 5.797 23 C 0.154 3.846 24 H 0.255 0.745 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.115 0.885 28 H 0.394 0.606 29 H 0.162 0.838 30 H 0.215 0.785 31 H 0.159 0.841 32 H 0.030 0.970 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -22.593 -4.125 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.356 5.356 13 C 0.372 3.628 14 O -0.402 6.402 15 C -0.338 4.338 16 C -0.064 4.064 17 C -0.052 4.052 18 O -0.063 6.063 19 C -0.057 4.057 20 C -0.201 4.201 21 C -0.343 4.343 22 S 0.468 5.532 23 C 0.028 3.972 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.133 0.867 28 H 0.228 0.772 29 H 0.179 0.821 30 H 0.231 0.769 31 H 0.176 0.824 32 H 0.048 0.952 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.230 -21.524 -4.254 22.808 hybrid contribution -0.471 0.218 0.246 0.574 sum -6.701 -21.306 -4.008 22.692 Atomic orbital electron populations 1.69834 1.05053 1.25447 1.56066 1.24833 0.95714 0.97694 1.02097 0.86008 0.78696 0.83490 0.77300 1.20395 1.21702 1.21583 1.19026 0.90282 0.81518 1.44495 0.89926 1.45714 1.02359 0.99156 1.86069 1.22877 0.94481 0.86906 0.97136 1.24051 0.93448 0.83625 1.00170 1.46034 1.39292 1.30934 1.19374 1.16757 0.79707 0.81228 0.85142 1.90864 1.64171 1.65862 1.19290 1.24140 1.06052 1.03812 0.99842 1.19047 0.95182 0.90845 1.01364 1.19278 0.95826 0.94742 0.95326 1.84351 1.49667 1.33972 1.38350 1.24112 1.00668 0.96832 0.84134 1.20968 1.00217 0.96670 1.02223 1.24121 1.06039 1.04282 0.99856 1.83845 1.36005 1.19797 1.13546 1.22727 0.88249 0.88919 0.97350 0.93529 0.92982 0.94632 0.86715 0.77186 0.82052 0.76895 0.82366 0.95208 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 11.39 55.49 0.63 -26.79 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.31 10.70 -15.06 -0.16 -6.48 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 9 N -0.61 -15.49 3.70 -177.89 -0.66 -16.15 16 10 C 0.11 2.23 8.69 -2.97 -0.03 2.21 16 11 C 0.09 1.78 4.40 -70.16 -0.31 1.47 16 12 N -0.71 -11.23 5.37 -56.74 -0.30 -11.54 16 13 C 0.59 9.70 7.77 -12.96 -0.10 9.60 16 14 O -0.52 -10.50 16.40 5.16 0.08 -10.42 16 15 C -0.22 -2.96 6.39 -37.13 -0.24 -3.20 16 16 C -0.03 -0.39 9.88 -40.25 -0.40 -0.79 16 17 C 0.00 0.05 7.79 -39.48 -0.31 -0.25 16 18 O -0.16 -1.74 10.72 -0.73 -0.01 -1.75 16 19 C 0.01 0.09 12.00 29.31 0.35 0.44 16 20 C -0.18 -1.45 10.91 -39.55 -0.43 -1.89 16 21 C -0.22 -2.48 7.35 -38.21 -0.28 -2.76 16 22 S 0.20 2.20 22.30 -107.50 -2.40 -0.20 16 23 C 0.15 3.68 7.33 -2.85 -0.02 3.66 16 24 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 27 H 0.11 2.39 7.50 -51.93 -0.39 2.00 16 28 H 0.39 5.23 7.78 -40.82 -0.32 4.92 16 29 H 0.16 2.00 8.01 -52.49 -0.42 1.57 16 30 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 2.15 7.17 -51.93 -0.37 1.78 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -33.88 306.56 -8.23 -42.11 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.16 Total: 1.27 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.02 Total: 1.73 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.33 Total: -54.47 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.40 Total: -0.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.88 -8.23 -42.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030945310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.390 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds