Wall clock time and date at job start Tue Mar 31 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47144 * 300.00348 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00334 * 3 2 1 7 7 C 1.38817 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99810 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49155 * 180.02562 * 9 7 2 11 11 C 1.53942 * 86.11649 * 155.35949 * 10 9 7 12 12 N 1.46506 * 113.74123 * 137.95393 * 11 10 9 13 13 C 1.34777 * 120.00094 * 156.92481 * 12 11 10 14 14 O 1.21735 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.46425 * 120.00012 * 179.97438 * 13 12 11 16 16 C 1.35875 * 124.99225 * 179.77251 * 15 13 12 17 17 C 1.38727 * 115.20681 * 179.82511 * 16 15 13 18 18 O 1.36645 * 139.74868 * 180.08177 * 17 16 15 19 19 C 1.34069 * 109.73868 * 180.31485 * 18 17 16 20 20 C 1.34215 * 109.49379 * 359.97438 * 19 18 17 21 21 C 1.38034 * 113.37998 * 0.40882 * 17 16 15 22 22 S 1.75644 * 124.99679 * 0.02562 * 15 13 12 23 23 C 1.47815 * 134.45882 * 359.87006 * 9 7 2 24 24 H 0.96998 * 120.00507 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.76936 * 41.05872 * 10 9 7 26 26 H 1.09003 * 113.76718 * 269.66229 * 10 9 7 27 27 H 1.08997 * 113.74132 * 269.15159 * 11 10 9 28 28 H 0.96998 * 119.99613 * 336.92377 * 12 11 10 29 29 H 1.07996 * 122.40094 * 359.97405 * 16 15 13 30 30 H 1.08001 * 125.25247 * 179.97438 * 19 18 17 31 31 H 1.07996 * 126.51288 * 179.97438 * 20 19 18 32 32 H 1.08994 * 113.76694 * 90.37614 * 23 9 7 33 33 H 1.08999 * 113.83442 * 318.91324 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3471 -4.0830 0.6398 12 7 -0.3333 -5.2614 0.0969 13 6 -1.2732 -5.8932 0.8276 14 8 -1.5572 -5.4843 1.9385 15 6 -1.9536 -7.0707 0.2848 16 6 -2.9103 -7.7856 0.9327 17 6 -3.4223 -8.8639 0.2260 18 8 -4.3418 -9.8642 0.3713 19 6 -4.3593 -10.6268 -0.7313 20 6 -3.4670 -10.1554 -1.6162 21 6 -2.8522 -9.0219 -1.0212 22 16 -1.6486 -7.7704 -1.2972 23 6 -0.1058 -2.7571 0.0023 24 1 -0.4851 0.8400 0.0004 25 1 2.5624 -4.0324 0.6547 26 1 1.8319 -4.2351 -0.9981 27 1 0.3595 -4.0640 1.7295 28 1 -0.1073 -5.5869 -0.7884 29 1 -3.2497 -7.5310 1.9259 30 1 -4.9936 -11.4875 -0.8839 31 1 -3.2559 -10.5615 -2.5943 32 1 -0.5318 -2.8718 -0.9943 33 1 -0.7184 -2.1403 0.6599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030945310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:34 Heat of formation + Delta-G solvation = 48.338060 kcal Electronic energy + Delta-G solvation = -19709.916591 eV Core-core repulsion = 16444.517497 eV Total energy + Delta-G solvation = -3265.399094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.50288 -41.11956 -39.34269 -36.98941 -35.26754 -33.86602 -33.48462 -30.20669 -29.11118 -26.65634 -26.06819 -24.60986 -23.57868 -21.87072 -21.55774 -20.80593 -19.68403 -18.79442 -17.95117 -17.49852 -17.26765 -16.97362 -16.51789 -16.08192 -15.95109 -15.67240 -15.60650 -14.63150 -14.26728 -13.75015 -13.71328 -13.44830 -13.27567 -13.20718 -13.17861 -12.84581 -12.67992 -12.32213 -12.18327 -11.91588 -11.56310 -11.29718 -11.28216 -10.91164 -10.15132 -9.51489 -9.10531 -8.99157 -7.92584 -5.28310 -0.82044 0.11563 0.67270 1.02154 1.35658 1.45904 1.47851 1.54990 1.58421 1.99248 2.09710 2.48974 3.23166 3.37011 3.55777 3.63467 3.78922 3.89268 4.15056 4.27869 4.44862 4.50296 4.66310 4.72361 4.73762 4.83969 4.88478 5.03122 5.21293 5.31933 5.46915 5.60436 5.85208 5.87490 6.36330 6.87091 7.01427 7.57155 8.49142 9.24410 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.002947 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.552826 B = 9498.944953 C = 9662.033716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.233 4.233 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.696 5.696 13 C 0.591 3.409 14 O -0.569 6.569 15 C -0.255 4.255 16 C -0.024 4.024 17 C -0.031 4.031 18 O -0.178 6.178 19 C 0.039 3.961 20 C -0.194 4.194 21 C -0.223 4.223 22 S 0.244 5.756 23 C 0.151 3.849 24 H 0.248 0.752 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.410 0.590 29 H 0.155 0.845 30 H 0.266 0.734 31 H 0.188 0.812 32 H 0.027 0.973 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -25.336 -5.831 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.110 0.890 9 N -0.365 5.365 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.347 5.347 13 C 0.378 3.622 14 O -0.449 6.449 15 C -0.374 4.374 16 C -0.059 4.059 17 C -0.086 4.086 18 O -0.077 6.077 19 C -0.030 4.030 20 C -0.217 4.217 21 C -0.341 4.341 22 S 0.510 5.490 23 C 0.024 3.976 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.247 0.753 29 H 0.173 0.827 30 H 0.281 0.719 31 H 0.206 0.794 32 H 0.045 0.955 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.770 -24.316 -5.992 25.699 hybrid contribution -0.720 0.823 0.718 1.308 sum -6.490 -23.493 -5.274 24.937 Atomic orbital electron populations 1.70043 1.06679 1.25676 1.57974 1.25737 0.96580 1.01267 1.02744 0.84932 0.78322 0.78969 0.76605 1.18452 1.21898 1.22109 1.19474 0.91019 0.82735 1.42905 0.88982 1.46034 1.03206 1.00862 1.86372 1.23028 0.94759 0.83574 0.98871 1.23341 0.93319 0.82997 0.99013 1.45720 1.39095 1.29774 1.20064 1.17084 0.79061 0.81617 0.84455 1.90834 1.65456 1.67383 1.21271 1.23682 1.07602 1.03917 1.02224 1.19088 0.94626 0.91005 1.01161 1.19179 0.97627 0.95804 0.95999 1.84367 1.49366 1.33974 1.40013 1.25226 0.99428 0.96256 0.82121 1.21445 1.00412 0.95937 1.03859 1.24611 1.05252 1.04608 0.99673 1.83560 1.35507 1.19058 1.10898 1.22606 0.87516 0.90817 0.96620 0.94265 0.91189 0.91494 0.88257 0.75322 0.82747 0.71885 0.79425 0.95494 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.15 11.39 21.65 0.25 -58.90 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.98 46.12 29.55 68.60 2.03 48.14 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.23 -13.08 10.70 84.04 0.90 -12.18 16 8 H 0.09 4.85 7.83 -2.91 -0.02 4.82 16 9 N -0.64 -32.79 3.70 -716.73 -2.65 -35.45 16 10 C 0.12 4.69 8.69 86.48 0.75 5.44 16 11 C 0.12 4.68 4.40 46.74 0.21 4.88 16 12 N -0.70 -22.03 5.37 -451.63 -2.42 -24.46 16 13 C 0.59 20.00 7.77 86.37 0.67 20.67 16 14 O -0.57 -23.90 16.40 -4.46 -0.07 -23.97 16 15 C -0.25 -6.93 6.39 23.85 0.15 -6.78 16 16 C -0.02 -0.63 9.88 21.84 0.22 -0.41 16 17 C -0.03 -0.72 7.79 22.34 0.17 -0.54 16 18 O -0.18 -3.37 10.72 -25.54 -0.27 -3.64 16 19 C 0.04 0.39 12.00 66.90 0.80 1.19 16 20 C -0.19 -2.42 10.91 22.29 0.24 -2.18 16 21 C -0.22 -4.42 7.35 23.16 0.17 -4.25 16 22 S 0.24 4.88 22.30 -56.49 -1.26 3.62 16 23 C 0.15 7.48 7.33 86.43 0.63 8.11 16 24 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.07 2.20 8.11 -2.39 -0.02 2.19 16 27 H 0.10 4.27 7.50 -2.39 -0.02 4.25 16 28 H 0.41 10.36 7.78 -92.71 -0.72 9.64 16 29 H 0.15 4.08 8.01 -2.91 -0.02 4.05 16 30 H 0.27 -0.41 8.06 -2.91 -0.02 -0.43 16 31 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 2.07 7.17 -2.39 -0.02 2.06 16 Total: -1.00 -76.77 306.56 1.42 -75.35 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.44 Total: 8.94 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.39 Total: 10.36 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -4.83 Total: -118.81 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.35 Total: -27.61 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.26 Total: 3.62 kcal Total: -76.77 1.42 -75.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030945310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.690 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds