Wall clock time and date at job start Tue Mar 31 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00402 * 2 1 4 4 H 1.48497 * 109.47252 * 275.42403 * 3 2 1 5 5 H 1.48509 * 109.47171 * 35.41976 * 3 2 1 6 6 H 1.48501 * 109.47419 * 155.42142 * 3 2 1 7 7 C 1.39927 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00547 * 341.66922 * 7 2 1 9 9 C 1.41423 * 120.00214 * 161.67310 * 7 2 1 10 10 C 1.40798 * 120.18268 * 330.37582 * 9 7 2 11 11 C 1.37678 * 119.99063 * 180.28152 * 10 9 7 12 12 C 1.38430 * 120.38154 * 359.74326 * 11 10 9 13 13 C 1.39701 * 120.37775 * 359.97438 * 12 11 10 14 14 C 1.48379 * 120.00234 * 180.02562 * 13 12 11 15 15 C 1.39433 * 120.10859 * 64.70012 * 14 13 12 16 16 F 1.35093 * 120.10380 * 0.02562 * 15 14 13 17 17 C 1.38707 * 119.78842 * 179.76904 * 15 14 13 18 18 O 1.35985 * 119.98907 * 180.24797 * 17 15 14 19 19 C 1.38712 * 120.02193 * 0.51182 * 17 15 14 20 20 C 1.38263 * 120.22832 * 359.74046 * 19 17 15 21 21 C 1.38143 * 120.20744 * 0.02562 * 20 19 17 22 22 Cl 1.73596 * 120.01618 * 180.02562 * 21 20 19 23 23 C 1.38775 * 119.99559 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99600 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00418 * 0.02645 * 10 9 7 26 26 H 1.08003 * 119.80629 * 179.76762 * 11 10 9 27 27 H 1.07996 * 119.80879 * 180.02562 * 12 11 10 28 28 H 0.96691 * 114.00673 * 270.26261 * 18 17 15 29 29 H 1.08009 * 119.89038 * 179.71961 * 19 17 15 30 30 H 1.08006 * 119.90118 * 179.97438 * 20 19 17 31 31 H 1.08007 * 120.18870 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5018 2.6169 0.8115 6 1 3.5925 1.4097 0.5823 7 6 2.0079 -1.2119 0.0005 8 1 1.5090 -2.1234 0.2951 9 6 3.3683 -1.2432 -0.3845 10 6 3.8623 -0.3093 -1.3152 11 6 5.1861 -0.3471 -1.6916 12 6 6.0394 -1.2965 -1.1562 13 6 5.5673 -2.2270 -0.2272 14 6 6.4893 -3.2407 0.3418 15 6 7.5605 -2.8418 1.1403 16 9 7.7619 -1.5312 1.3988 17 6 8.4156 -3.7954 1.6728 18 8 9.4586 -3.4114 2.4562 19 6 8.2103 -5.1403 1.4020 20 6 7.1514 -5.5363 0.6060 21 6 6.2912 -4.5949 0.0747 22 17 4.9629 -5.0977 -0.9235 23 6 4.2358 -2.2031 0.1633 24 1 -0.4850 0.8401 -0.0004 25 1 3.2019 0.4341 -1.7368 26 1 5.5610 0.3684 -2.4086 27 1 7.0762 -1.3175 -1.4578 28 1 10.2737 -3.2345 1.9671 29 1 8.8801 -5.8807 1.8140 30 1 6.9968 -6.5848 0.3982 31 1 3.8674 -2.9212 0.8810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244540887.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:41 Heat of formation + Delta-G solvation = -72.303812 kcal Electronic energy + Delta-G solvation = -20152.726958 eV Core-core repulsion = 16724.299677 eV Total energy + Delta-G solvation = -3428.427281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 292.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97125 -40.79085 -39.56099 -38.15963 -37.02605 -35.59840 -33.46320 -32.16460 -30.70637 -29.84296 -27.09944 -24.79238 -23.76452 -22.48127 -22.30063 -19.84929 -18.89972 -18.60628 -17.92153 -17.70508 -17.03745 -16.54727 -16.37651 -15.84977 -15.63213 -15.46364 -14.77801 -14.66118 -14.42348 -14.08299 -13.95794 -13.68788 -13.41818 -13.17491 -12.77239 -12.71994 -12.24571 -12.12045 -11.93378 -11.82994 -11.65419 -11.48033 -11.03862 -10.09101 -9.62008 -9.56919 -9.28979 -8.91872 -6.52992 -0.23961 -0.13945 0.72096 0.76585 1.08431 1.23519 1.38150 1.46329 2.09928 2.21989 2.54489 2.85362 3.24042 3.42321 3.52397 3.81527 4.03476 4.28835 4.33927 4.44303 4.61053 4.66001 4.83292 4.92338 4.97055 5.00127 5.02427 5.24685 5.48878 5.52624 5.71824 5.82221 5.89628 6.17540 6.34072 6.67314 6.69072 6.79249 8.16890 Molecular weight = 292.04amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.005493 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.931025 B = 5096.323187 C = 5825.315195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.051 3.949 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.056 0.944 9 C 0.073 3.927 10 C -0.242 4.242 11 C -0.082 4.082 12 C -0.204 4.204 13 C -0.030 4.030 14 C -0.063 4.063 15 C 0.068 3.932 16 F -0.137 7.137 17 C 0.086 3.914 18 O -0.492 6.492 19 C -0.093 4.093 20 C -0.091 4.091 21 C -0.025 4.025 22 Cl -0.056 7.056 23 C -0.181 4.181 24 H 0.294 0.706 25 H 0.100 0.900 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.415 0.585 29 H 0.190 0.810 30 H 0.177 0.823 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.326 -8.674 0.420 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.164 4.164 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.071 3.929 10 C -0.261 4.261 11 C -0.100 4.100 12 C -0.223 4.223 13 C -0.030 4.030 14 C -0.065 4.065 15 C 0.048 3.952 16 F -0.115 7.115 17 C 0.040 3.960 18 O -0.305 6.305 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.052 4.052 22 Cl -0.027 7.027 23 C -0.200 4.200 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.150 0.850 27 H 0.138 0.862 28 H 0.275 0.725 29 H 0.207 0.793 30 H 0.195 0.805 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.535 -8.639 0.809 19.564 hybrid contribution -0.371 1.117 -0.372 1.234 sum 17.164 -7.523 0.437 18.745 Atomic orbital electron populations 1.69724 1.09056 1.31401 1.37295 1.26743 0.95290 1.03952 0.90374 0.85559 0.79499 0.76852 0.79656 1.17910 1.20277 1.18187 1.19418 0.94405 0.95652 1.41901 0.92593 1.17762 0.92580 0.92091 0.90476 1.21237 0.96914 1.04313 1.03613 1.20891 0.92761 0.97733 0.98599 1.20720 0.99301 0.99125 1.03133 1.18325 0.92253 0.95087 0.97355 1.18816 0.95327 0.93194 0.99183 1.18277 0.97950 0.78591 1.00385 1.91475 1.94424 1.33231 1.92414 1.18453 0.91471 0.91395 0.94717 1.84837 1.21808 1.89244 1.34655 1.21619 0.98601 0.94177 0.96719 1.21316 0.92818 1.00590 0.96233 1.21021 0.93355 0.92213 0.98612 1.98403 1.45918 1.90575 1.67839 1.20998 0.92268 1.03162 1.03583 0.89582 0.88208 0.84970 0.86233 0.72467 0.79319 0.80516 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.45 13.93 21.82 0.30 -47.15 16 2 C 0.05 2.80 5.40 85.25 0.46 3.26 16 3 Si 0.96 43.99 24.51 68.60 1.68 45.67 16 4 H -0.25 -10.85 6.70 99.48 0.67 -10.18 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -12.27 6.86 99.48 0.68 -11.59 16 7 C -0.48 -27.96 9.57 23.46 0.22 -27.73 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 C 0.07 3.87 5.11 -21.32 -0.11 3.76 16 10 C -0.24 -11.70 7.17 22.76 0.16 -11.54 16 11 C -0.08 -3.43 10.01 22.18 0.22 -3.20 16 12 C -0.20 -8.23 9.55 22.67 0.22 -8.01 16 13 C -0.03 -1.26 4.36 -20.09 -0.09 -1.35 16 14 C -0.06 -2.19 5.31 -20.00 -0.11 -2.30 16 15 C 0.07 2.13 7.24 22.67 0.16 2.29 16 16 F -0.14 -4.88 16.50 44.97 0.74 -4.13 16 17 C 0.09 1.95 6.70 22.50 0.15 2.10 16 18 O -0.49 -9.32 13.36 -93.38 -1.25 -10.57 16 19 C -0.09 -1.54 9.97 22.39 0.22 -1.32 16 20 C -0.09 -1.77 9.81 22.25 0.22 -1.55 16 21 C -0.03 -0.73 6.32 22.54 0.14 -0.58 16 22 Cl -0.06 -1.80 27.29 -2.72 -0.07 -1.87 16 23 C -0.18 -8.74 8.55 22.95 0.20 -8.55 16 24 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 25 H 0.10 4.79 4.70 -2.91 -0.01 4.78 16 26 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 27 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.42 3.45 9.06 -74.06 -0.67 2.78 16 29 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -67.70 291.75 3.95 -63.75 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.46 Total: 9.03 kcal Atomic # 6 Polarization: -56.81 SS G_CDS: 2.08 Total: -54.73 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.30 Total: -47.15 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.25 Total: -10.57 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.74 Total: -4.13 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.68 Total: 45.67 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -67.70 3.95 -63.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244540887.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.550 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds