Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47547 * 2 1 4 4 C 1.50706 * 109.47233 * 120.00354 * 2 1 3 5 5 H 1.07990 * 120.00179 * 119.99689 * 4 2 1 6 6 C 1.37875 * 119.99628 * 299.99334 * 4 2 1 7 7 N 1.31516 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46792 * 90.00485 * 8 6 4 10 10 H 1.48495 * 109.47296 * 210.00400 * 8 6 4 11 11 H 1.48497 * 109.47293 * 330.00444 * 8 6 4 12 12 N 1.46504 * 109.47245 * 239.99756 * 2 1 3 13 13 C 1.46500 * 119.99987 * 300.00641 * 12 2 1 14 14 C 1.34774 * 119.99886 * 119.99855 * 12 2 1 15 15 O 1.21542 * 119.99870 * 6.94129 * 14 12 2 16 16 C 1.47918 * 120.00098 * 186.94520 * 14 12 2 17 17 C 1.39673 * 119.98168 * 20.44466 * 16 14 12 18 18 C 1.37686 * 120.03550 * 179.76632 * 17 16 14 19 19 C 1.39701 * 120.01206 * 0.51236 * 18 17 16 20 20 C 1.43199 * 120.01489 * 179.71912 * 19 18 17 21 21 N 9.02979 * 109.06871 * 249.31792 * 2 1 3 22 22 C 1.39778 * 119.97175 * 359.74177 * 19 18 17 23 23 Cl 1.73599 * 120.02314 * 179.97438 * 22 19 18 24 24 C 1.37917 * 119.95606 * 0.02562 * 22 19 18 25 25 H 1.08994 * 109.46846 * 59.99849 * 1 2 3 26 26 H 1.09008 * 109.46418 * 299.99878 * 1 2 3 27 27 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99957 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47516 * 86.51669 * 13 12 2 30 30 H 1.08998 * 109.47140 * 206.51689 * 13 12 2 31 31 H 1.09002 * 109.47116 * 326.51350 * 13 12 2 32 32 H 1.07995 * 119.97751 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.98964 * 180.25178 * 18 17 16 34 34 H 1.08002 * 120.00177 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7120 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.1910 1.0849 -1.8317 16 6 3.1593 -0.6805 -3.3632 17 6 2.3963 -1.7431 -3.8528 18 6 2.7333 -2.3410 -5.0464 19 6 3.8451 -1.8921 -5.7634 20 6 4.1992 -2.5179 -7.0018 21 7 4.4800 -3.0142 -7.9843 22 6 4.6121 -0.8323 -5.2712 23 17 5.9944 -0.2739 -6.1607 24 6 4.2706 -0.2311 -4.0778 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 0.7084 1.1609 3.4844 29 1 0.7064 -2.1455 -1.9453 30 1 2.4334 -2.5658 -2.0390 31 1 1.5900 -2.6120 -0.4722 32 1 1.5397 -2.0936 -3.2965 33 1 2.1404 -3.1598 -5.4263 34 1 4.8625 0.5881 -3.6970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126364982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 37.445317 kcal Electronic energy + Delta-G solvation = -20210.277274 eV Core-core repulsion = 16942.362129 eV Total energy + Delta-G solvation = -3267.915145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45905 -38.64845 -36.80517 -36.57702 -35.65744 -33.26293 -31.76487 -31.27317 -29.25627 -26.76342 -25.36344 -24.94241 -23.02973 -21.44307 -19.48157 -19.05851 -17.28635 -16.51459 -16.24781 -15.51452 -15.24104 -14.78791 -14.67676 -14.39880 -14.22104 -13.90905 -13.20852 -13.15685 -12.99864 -12.72799 -12.64858 -12.48286 -11.98123 -11.83678 -11.61606 -11.32314 -11.14776 -10.98266 -10.89462 -10.76818 -10.35244 -10.24292 -9.40109 -9.32919 -9.22994 -9.01911 -8.51327 -7.79764 -6.15569 -4.24097 0.10932 0.84314 1.67771 2.35113 2.39337 3.21180 3.22902 3.30045 3.30645 3.44240 3.62257 3.77122 4.32404 4.39890 4.60225 4.80934 4.92714 5.02684 5.16494 5.43165 5.49606 5.63018 5.71115 5.77760 5.98820 6.19089 6.26433 6.63686 6.70499 6.92408 7.14633 7.22837 7.38543 7.61081 7.89384 8.07252 8.31221 8.66345 8.83653 9.42654 10.89823 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.003639 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.384446 B = 7691.884069 C = 7953.659980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.065 3.935 14 C 0.540 3.460 15 O -0.536 6.536 16 C -0.075 4.075 17 C -0.109 4.109 18 C -0.068 4.068 19 C -0.010 4.010 20 C 0.254 3.746 21 N -0.402 5.402 22 C -0.004 4.004 23 Cl -0.051 7.051 24 C -0.058 4.058 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.946 -6.412 -12.945 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.078 4.078 14 C 0.326 3.674 15 O -0.414 6.414 16 C -0.079 4.079 17 C -0.127 4.127 18 C -0.088 4.088 19 C -0.015 4.015 20 C -0.062 4.062 21 N -0.077 5.077 22 C -0.034 4.034 23 Cl -0.022 7.022 24 C -0.077 4.077 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.603 -6.418 -14.222 15.818 hybrid contribution 0.334 -0.280 1.155 1.235 sum 2.936 -6.698 -13.066 14.974 Atomic orbital electron populations 1.22106 0.97825 0.99608 1.01060 1.19044 0.90961 0.94559 0.79621 0.91652 1.21277 1.32102 1.13196 0.90168 0.92085 1.24883 0.94817 0.94949 0.99012 1.69868 1.36093 1.22552 1.23930 0.86480 0.78703 0.79850 0.82277 1.20550 1.21110 1.19879 1.48192 1.47955 1.11436 1.23376 1.22263 0.98673 0.83624 1.03245 1.18093 0.80065 0.86115 0.83156 1.90774 1.53784 1.19448 1.77435 1.20505 0.95263 0.95897 0.96280 1.22528 1.00994 0.94040 0.95099 1.21165 0.94340 0.99684 0.93655 1.15927 0.98171 0.96815 0.90561 1.25407 0.94053 0.93867 0.92857 1.81228 1.07330 1.08485 1.10692 1.20789 0.91538 0.96446 0.94609 1.98408 1.40722 1.88560 1.74474 1.21134 0.96162 0.99079 0.91349 0.96852 0.88617 0.94975 0.92566 0.92776 0.91228 0.89697 0.81182 0.83504 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.97 37.16 0.33 -2.89 16 2 C 0.26 6.06 2.63 -69.08 -0.18 5.88 16 3 H 0.07 1.81 6.92 -51.93 -0.36 1.45 16 4 C -0.53 -13.38 8.02 -34.44 -0.28 -13.65 16 5 H 0.06 1.51 7.28 -52.49 -0.38 1.13 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.94 11.32 55.43 0.63 -23.31 16 8 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 12 N -0.58 -10.95 2.75 -176.35 -0.49 -11.44 16 13 C 0.07 0.90 7.67 59.85 0.46 1.35 16 14 C 0.54 10.02 7.52 -12.30 -0.09 9.93 16 15 O -0.54 -12.14 15.87 5.33 0.08 -12.06 16 16 C -0.07 -1.01 5.57 -104.91 -0.58 -1.60 16 17 C -0.11 -1.09 7.59 -39.25 -0.30 -1.38 16 18 C -0.07 -0.57 9.73 -39.24 -0.38 -0.95 16 19 C -0.01 -0.10 5.74 -106.85 -0.61 -0.72 16 20 C 0.25 2.84 14.36 -22.47 -0.32 2.52 16 21 N -0.40 -5.21 18.54 41.84 0.78 -4.43 16 22 C 0.00 -0.05 6.34 -39.12 -0.25 -0.30 16 23 Cl -0.05 -0.56 28.01 -51.86 -1.45 -2.02 16 24 C -0.06 -0.73 9.35 -39.21 -0.37 -1.09 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.10 2.35 6.07 -51.92 -0.32 2.03 16 27 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 29 H 0.05 0.60 6.98 -51.93 -0.36 0.24 16 30 H 0.07 0.76 5.27 -51.93 -0.27 0.49 16 31 H 0.08 1.29 6.98 -51.93 -0.36 0.93 16 32 H 0.17 1.47 4.01 -52.49 -0.21 1.26 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.16 2.02 7.78 -52.49 -0.41 1.61 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -29.64 309.60 -6.53 -36.16 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.05 Total: -1.39 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.67 Total: -1.28 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.92 Total: -39.18 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.45 Total: -2.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.64 -6.53 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126364982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.610 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds