Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47547 * 2 1 4 4 C 1.50706 * 109.47233 * 120.00354 * 2 1 3 5 5 H 1.07990 * 120.00179 * 119.99689 * 4 2 1 6 6 C 1.37875 * 119.99628 * 299.99334 * 4 2 1 7 7 N 1.31516 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46792 * 90.00485 * 8 6 4 10 10 H 1.48495 * 109.47296 * 210.00400 * 8 6 4 11 11 H 1.48497 * 109.47293 * 330.00444 * 8 6 4 12 12 N 1.46504 * 109.47245 * 239.99756 * 2 1 3 13 13 C 1.46500 * 119.99987 * 300.00641 * 12 2 1 14 14 C 1.34774 * 119.99886 * 119.99855 * 12 2 1 15 15 O 1.21542 * 119.99870 * 6.94129 * 14 12 2 16 16 C 1.47918 * 120.00098 * 186.94520 * 14 12 2 17 17 C 1.39673 * 119.98168 * 20.44466 * 16 14 12 18 18 C 1.37686 * 120.03550 * 179.76632 * 17 16 14 19 19 C 1.39701 * 120.01206 * 0.51236 * 18 17 16 20 20 C 1.43199 * 120.01489 * 179.71912 * 19 18 17 21 21 N 9.02979 * 109.06871 * 249.31792 * 2 1 3 22 22 C 1.39778 * 119.97175 * 359.74177 * 19 18 17 23 23 Cl 1.73599 * 120.02314 * 179.97438 * 22 19 18 24 24 C 1.37917 * 119.95606 * 0.02562 * 22 19 18 25 25 H 1.08994 * 109.46846 * 59.99849 * 1 2 3 26 26 H 1.09008 * 109.46418 * 299.99878 * 1 2 3 27 27 H 1.08996 * 109.47140 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99957 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47516 * 86.51669 * 13 12 2 30 30 H 1.08998 * 109.47140 * 206.51689 * 13 12 2 31 31 H 1.09002 * 109.47116 * 326.51350 * 13 12 2 32 32 H 1.07995 * 119.97751 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.98964 * 180.25178 * 18 17 16 34 34 H 1.08002 * 120.00177 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7120 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.1910 1.0849 -1.8317 16 6 3.1593 -0.6805 -3.3632 17 6 2.3963 -1.7431 -3.8528 18 6 2.7333 -2.3410 -5.0464 19 6 3.8451 -1.8921 -5.7634 20 6 4.1992 -2.5179 -7.0018 21 7 4.4800 -3.0142 -7.9843 22 6 4.6121 -0.8323 -5.2712 23 17 5.9944 -0.2739 -6.1607 24 6 4.2706 -0.2311 -4.0778 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 0.7084 1.1609 3.4844 29 1 0.7064 -2.1455 -1.9453 30 1 2.4334 -2.5658 -2.0390 31 1 1.5900 -2.6120 -0.4722 32 1 1.5397 -2.0936 -3.2965 33 1 2.1404 -3.1598 -5.4263 34 1 4.8625 0.5881 -3.6970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126364982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 20.447310 kcal Electronic energy + Delta-G solvation = -20211.014363 eV Core-core repulsion = 16942.362129 eV Total energy + Delta-G solvation = -3268.652234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59707 -39.85104 -37.70126 -37.55794 -37.24770 -34.95767 -32.95311 -32.27341 -30.81343 -27.98606 -27.26438 -26.11040 -23.93179 -22.94995 -20.62753 -20.26737 -18.65038 -18.18365 -17.54912 -16.86217 -16.35551 -16.26843 -15.85591 -15.44794 -15.37292 -14.92776 -14.59772 -14.36431 -14.10984 -13.99264 -13.82179 -13.62250 -13.47273 -13.00542 -12.92445 -12.80546 -12.67562 -12.49585 -12.23446 -12.17252 -12.07124 -11.86143 -11.15478 -10.80795 -10.48329 -10.25480 -9.92364 -9.34032 -8.11601 -6.27374 -0.82480 -0.00174 0.79532 1.38401 1.44985 1.46677 1.47024 1.55733 2.10211 2.24487 2.47382 2.59784 2.67565 3.17612 3.48090 3.60846 3.94553 4.01934 4.11657 4.45035 4.66181 4.70164 4.70814 4.85854 4.91475 4.97203 5.08447 5.10176 5.14676 5.39748 5.53166 5.62791 5.70654 6.06753 6.20041 6.27262 6.76072 6.80353 7.26642 7.46051 8.92579 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.003639 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.384446 B = 7691.884069 C = 7953.659980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.259 1.259 12 N -0.586 5.586 13 C 0.056 3.944 14 C 0.533 3.467 15 O -0.594 6.594 16 C -0.089 4.089 17 C -0.092 4.092 18 C -0.039 4.039 19 C -0.003 4.003 20 C 0.272 3.728 21 N -0.430 5.430 22 C -0.005 4.005 23 Cl -0.053 7.053 24 C -0.064 4.064 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.193 0.807 33 H 0.192 0.808 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -9.458 -14.291 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.212 1.212 10 H -0.208 1.208 11 H -0.183 1.183 12 N -0.315 5.315 13 C -0.085 4.085 14 C 0.322 3.678 15 O -0.476 6.476 16 C -0.093 4.093 17 C -0.110 4.110 18 C -0.059 4.059 19 C -0.007 4.007 20 C -0.043 4.043 21 N -0.105 5.105 22 C -0.034 4.034 23 Cl -0.024 7.024 24 C -0.084 4.084 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.209 0.791 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.894 -9.515 -15.595 18.366 hybrid contribution 0.582 0.677 1.498 1.744 sum 2.477 -8.837 -14.097 16.822 Atomic orbital electron populations 1.21879 0.96495 1.00604 1.00193 1.18603 0.91896 0.92203 0.81349 0.97212 1.21585 1.31786 1.13131 0.91051 0.91810 1.25680 0.95093 0.95622 1.01919 1.70014 1.37290 1.23911 1.24370 0.85517 0.77621 0.79414 0.78838 1.21201 1.20824 1.18319 1.48127 1.47938 1.13392 1.22046 1.22662 1.01692 0.80387 1.03772 1.18826 0.78921 0.85567 0.84532 1.90736 1.55841 1.22115 1.78952 1.20054 0.96995 0.97850 0.94411 1.22669 1.00527 0.92281 0.95513 1.21563 0.93035 0.99412 0.91929 1.16027 0.98428 0.96103 0.90185 1.25384 0.93241 0.93125 0.92554 1.81268 1.08172 1.09525 1.11557 1.20704 0.91760 0.96798 0.94145 1.98411 1.40949 1.88730 1.74314 1.20947 0.96252 0.99144 0.92028 0.95606 0.91581 0.92827 0.92714 0.89102 0.87872 0.91008 0.79075 0.79060 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.97 71.98 0.65 -5.19 16 2 C 0.26 12.60 2.63 44.25 0.12 12.72 16 3 H 0.01 0.58 6.92 -2.39 -0.02 0.57 16 4 C -0.54 -27.48 8.02 25.60 0.21 -27.28 16 5 H 0.06 3.14 7.28 -2.92 -0.02 3.12 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -50.97 11.32 21.45 0.24 -50.73 16 8 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 9 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 12 N -0.59 -21.87 2.75 -830.12 -2.28 -24.15 16 13 C 0.06 1.36 7.67 127.77 0.98 2.34 16 14 C 0.53 20.04 7.52 86.81 0.65 20.70 16 15 O -0.59 -28.57 15.87 -3.85 -0.06 -28.63 16 16 C -0.09 -2.27 5.57 -20.05 -0.11 -2.38 16 17 C -0.09 -1.44 7.59 22.49 0.17 -1.27 16 18 C -0.04 -0.44 9.73 22.49 0.22 -0.23 16 19 C 0.00 -0.05 5.74 -21.31 -0.12 -0.17 16 20 C 0.27 5.22 14.36 88.33 1.27 6.48 16 21 N -0.43 -10.02 18.54 19.00 0.35 -9.66 16 22 C 0.00 -0.10 6.34 22.57 0.14 0.05 16 23 Cl -0.05 -1.13 28.01 -2.72 -0.08 -1.20 16 24 C -0.06 -1.57 9.35 22.51 0.21 -1.36 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 3.32 6.07 -2.38 -0.01 3.30 16 27 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 28 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.09 1.57 6.98 -2.39 -0.02 1.56 16 30 H 0.10 1.81 5.27 -2.39 -0.01 1.80 16 31 H 0.07 1.98 6.98 -2.39 -0.02 1.97 16 32 H 0.19 2.22 4.01 -2.91 -0.01 2.21 16 33 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.14 3.84 7.78 -2.91 -0.02 3.82 16 Total: -1.00 -69.07 309.60 6.18 -62.89 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.16 Total: 2.39 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.83 Total: 5.72 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.69 Total: -84.55 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.63 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -69.07 6.18 -62.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126364982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.336 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds