Wall clock time and date at job start Tue Mar 31 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48499 * 109.47012 * 240.00110 * 3 2 1 5 5 H 1.48501 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47068 * 120.00059 * 3 2 1 7 7 C 1.37882 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99995 * 174.95382 * 7 2 1 9 9 C 1.50699 * 120.00002 * 354.96013 * 7 2 1 10 10 O 1.45207 * 112.85064 * 64.94997 * 9 7 2 11 11 C 1.34899 * 116.99764 * 54.49726 * 10 9 7 12 12 O 1.21629 * 119.99902 * 355.18940 * 11 10 9 13 13 C 1.46394 * 119.99888 * 175.18595 * 11 10 9 14 14 C 1.35971 * 125.42068 * 180.02562 * 13 11 10 15 15 C 1.39116 * 113.99120 * 180.23784 * 14 13 11 16 16 C 1.34414 * 114.00295 * 359.48560 * 15 14 13 17 17 S 1.71479 * 111.08619 * 0.50602 * 16 15 14 18 18 C 1.52370 * 110.37672 * 180.33351 * 16 15 14 19 19 C 1.54158 * 104.90932 * 17.80842 * 18 16 15 20 20 C 1.52820 * 136.18386 * 180.42531 * 15 14 13 21 21 C 1.53776 * 113.69097 * 196.21855 * 9 7 2 22 22 C 1.53785 * 87.08116 * 89.12943 * 21 9 7 23 23 C 1.53781 * 113.61609 * 293.75710 * 9 7 2 24 24 H 0.97003 * 120.00138 * 5.00280 * 1 2 3 25 25 H 1.08001 * 123.00694 * 359.97247 * 14 13 11 26 26 H 1.09000 * 110.35435 * 136.66352 * 18 16 15 27 27 H 1.09000 * 110.35235 * 258.84644 * 18 16 15 28 28 H 1.09003 * 110.96161 * 91.39857 * 19 18 16 29 29 H 1.08993 * 110.96406 * 215.10790 * 19 18 16 30 30 H 1.08998 * 110.48851 * 42.83008 * 20 15 14 31 31 H 1.09001 * 110.19732 * 280.69287 * 20 15 14 32 32 H 1.08999 * 113.61481 * 203.67634 * 21 9 7 33 33 H 1.09002 * 113.61292 * 334.57690 * 21 9 7 34 34 H 1.09007 * 113.60870 * 270.88589 * 22 21 9 35 35 H 1.08993 * 113.69281 * 139.99206 * 22 21 9 36 36 H 1.09000 * 113.60891 * 25.34560 * 23 9 7 37 37 H 1.08999 * 113.61841 * 156.16705 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 -0.0817 9 6 1.2553 -2.4966 0.1158 10 8 0.3930 -2.7539 -1.0239 11 6 0.9660 -2.7223 -2.2448 12 8 2.1332 -2.4006 -2.3606 13 6 0.1829 -3.0755 -3.4302 14 6 0.6471 -3.0818 -4.7082 15 6 -0.3041 -3.4514 -5.6536 16 6 -1.5075 -3.7462 -5.1323 17 16 -1.5040 -3.5588 -3.4278 18 6 -2.4798 -4.1464 -6.2350 19 6 -1.5880 -4.4924 -7.4439 20 6 -0.3387 -3.6322 -7.1707 21 6 2.1467 -3.6906 0.4957 22 6 1.8614 -3.3354 1.9645 23 6 0.5565 -2.6875 1.4723 24 1 -0.4850 0.8369 -0.0733 25 1 1.6622 -2.8191 -4.9667 26 1 -3.0605 -5.0172 -5.9308 27 1 -3.1424 -3.3152 -6.4763 28 1 -1.3367 -5.5530 -7.4523 29 1 -2.0668 -4.1997 -8.3782 30 1 0.5584 -4.1474 -7.5140 31 1 -0.4304 -2.6641 -7.6631 32 1 1.7382 -4.6545 0.1923 33 1 3.1912 -3.5638 0.2107 34 1 2.5703 -2.6232 2.3871 35 1 1.7035 -4.2048 2.6026 36 1 0.3172 -1.7507 1.9757 37 1 -0.2877 -3.3760 1.4356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788144708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:09 Heat of formation + Delta-G solvation = -29.906482 kcal Electronic energy + Delta-G solvation = -21084.315568 eV Core-core repulsion = 17919.063880 eV Total energy + Delta-G solvation = -3165.251689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45911 -38.94854 -37.04538 -34.31804 -33.90373 -32.25461 -28.54340 -28.10141 -26.12757 -24.57003 -24.04834 -22.52505 -21.63233 -19.89090 -18.56476 -18.09033 -17.66414 -16.33889 -15.78544 -15.29512 -15.04886 -14.80279 -14.28338 -14.24026 -13.84852 -13.19259 -12.93906 -12.69923 -12.22585 -12.15036 -11.84975 -11.62829 -11.55572 -11.25684 -11.17873 -10.99723 -10.91590 -10.78120 -10.47696 -10.41053 -10.27179 -9.94762 -9.79630 -9.39091 -8.81798 -8.54000 -8.49951 -8.31500 -8.04902 -6.08293 -4.17558 0.91163 1.72906 2.36417 2.63910 3.30735 3.34585 3.39561 3.87649 4.02665 4.39012 4.50450 4.59367 4.87408 5.14175 5.26075 5.45369 5.51261 5.61620 5.68168 5.69042 5.76851 5.80160 5.89772 5.91627 6.03855 6.06636 6.28579 6.41867 6.49168 6.60510 6.62307 6.65161 6.88406 7.10797 7.32292 7.55736 7.77827 7.90729 8.36409 8.83662 9.18144 9.49941 10.96507 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.004963 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.043871 B = 5640.412820 C = 6180.427876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.239 3.761 10 O -0.345 6.345 11 C 0.534 3.466 12 O -0.488 6.488 13 C -0.224 4.224 14 C -0.059 4.059 15 C -0.140 4.140 16 C -0.249 4.249 17 S 0.260 5.740 18 C -0.040 4.040 19 C -0.118 4.118 20 C -0.055 4.055 21 C -0.162 4.162 22 C -0.130 4.130 23 C -0.106 4.106 24 H 0.263 0.737 25 H 0.147 0.853 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -8.684 -10.141 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.086 0.914 9 C 0.205 3.795 10 O -0.261 6.261 11 C 0.375 3.625 12 O -0.377 6.377 13 C -0.343 4.343 14 C -0.091 4.091 15 C -0.154 4.154 16 C -0.368 4.368 17 S 0.530 5.470 18 C -0.080 4.080 19 C -0.156 4.156 20 C -0.094 4.094 21 C -0.200 4.200 22 C -0.167 4.167 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.165 0.835 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.234 -8.639 -8.845 13.846 hybrid contribution 1.625 1.306 -1.207 2.409 sum -4.609 -7.334 -10.051 13.268 Atomic orbital electron populations 1.70008 1.05828 1.27202 1.47214 1.25041 0.94873 0.99307 0.93875 0.86626 0.79765 0.82624 0.78962 1.19998 1.21179 1.19868 1.20878 0.93510 0.88546 1.51324 0.91408 1.21266 0.86425 0.92315 0.79469 1.86545 1.45265 1.79949 1.14339 1.19161 0.84950 0.75237 0.83110 1.90795 1.16983 1.42959 1.87002 1.23906 0.98682 1.14946 0.96719 1.20118 1.00632 0.98805 0.89544 1.20240 0.93053 1.05293 0.96775 1.25838 1.01294 1.09209 1.00507 1.83158 1.06399 1.60760 0.96637 1.20791 0.95563 1.01098 0.90507 1.22272 0.95563 1.00269 0.97537 1.20949 0.98506 1.00154 0.89824 1.23572 1.00959 0.98700 0.96768 1.22504 0.99325 0.99466 0.95416 1.22887 0.95135 1.00096 0.96247 0.92688 0.83519 0.90812 0.90127 0.90812 0.90347 0.90912 0.90531 0.92036 0.91960 0.90180 0.92922 0.90466 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.73 12.54 55.43 0.69 -24.04 16 2 C 0.07 2.08 5.24 -17.82 -0.09 1.99 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.15 6.29 -34.44 -0.22 -14.37 16 8 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 9 C 0.24 6.11 0.50 -90.96 -0.05 6.07 16 10 O -0.34 -8.91 9.78 -41.04 -0.40 -9.31 16 11 C 0.53 13.29 7.57 34.01 0.26 13.55 16 12 O -0.49 -13.26 15.19 -19.36 -0.29 -13.56 16 13 C -0.22 -4.59 6.41 -37.11 -0.24 -4.83 16 14 C -0.06 -1.06 9.99 -40.07 -0.40 -1.46 16 15 C -0.14 -2.10 6.49 -104.59 -0.68 -2.78 16 16 C -0.25 -3.58 7.10 -34.83 -0.25 -3.83 16 17 S 0.26 4.38 22.92 -107.50 -2.46 1.92 16 18 C -0.04 -0.42 6.80 -26.45 -0.18 -0.60 16 19 C -0.12 -1.03 7.11 -25.54 -0.18 -1.21 16 20 C -0.06 -0.60 6.81 -26.24 -0.18 -0.78 16 21 C -0.16 -3.60 7.29 -25.92 -0.19 -3.79 16 22 C -0.13 -2.61 7.81 -25.92 -0.20 -2.81 16 23 C -0.11 -2.44 7.19 -25.92 -0.19 -2.63 16 24 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 25 H 0.15 2.57 8.04 -52.49 -0.42 2.14 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.91 7.63 -51.93 -0.40 1.51 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -31.46 325.22 -10.38 -41.84 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.01 Total: -1.06 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.78 Total: -17.48 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.69 Total: -24.04 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.70 Total: -22.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.46 Total: 1.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.46 -10.38 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.930 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds