Wall clock time and date at job start Tue Mar 31 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47045 * 2 1 4 4 H 1.08996 * 109.47492 * 304.99637 * 3 2 1 5 5 C 1.50698 * 109.47079 * 184.99786 * 3 2 1 6 6 H 1.08001 * 120.00443 * 239.99818 * 5 3 2 7 7 C 1.37880 * 119.99926 * 59.99924 * 5 3 2 8 8 N 1.31511 * 120.00004 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00207 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46590 * 90.00408 * 9 7 5 11 11 H 1.48499 * 109.47282 * 209.99830 * 9 7 5 12 12 H 1.48498 * 109.46921 * 330.00756 * 9 7 5 13 13 N 1.46499 * 109.47387 * 65.00332 * 3 2 1 14 14 C 1.38451 * 119.99594 * 275.00097 * 13 3 2 15 15 N 1.32268 * 120.67953 * 359.97438 * 14 13 3 16 16 N 1.28090 * 123.35327 * 180.02562 * 15 14 13 17 17 C 1.31515 * 123.51921 * 359.33459 * 16 15 14 18 18 Cl 1.73600 * 120.54295 * 180.02562 * 17 16 15 19 19 C 1.40552 * 118.91143 * 0.97613 * 17 16 15 20 20 C 1.40190 * 123.70285 * 179.07735 * 19 17 16 21 21 C 1.36426 * 118.41448 * 180.02562 * 20 19 17 22 22 N 1.32553 * 121.93208 * 359.97438 * 21 20 19 23 23 C 1.31493 * 122.83978 * 0.02562 * 22 21 20 24 24 C 1.39777 * 119.64123 * 0.28753 * 23 22 21 25 25 H 1.09000 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47254 * 300.00176 * 1 2 3 27 27 H 1.08998 * 109.47278 * 59.99983 * 1 2 3 28 28 H 1.08994 * 109.47087 * 239.99894 * 2 1 3 29 29 H 1.09005 * 109.47239 * 119.99611 * 2 1 3 30 30 H 0.97004 * 120.00616 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00364 * 94.99523 * 13 3 2 32 32 H 1.08002 * 120.78820 * 0.03940 * 20 19 17 33 33 H 1.07992 * 119.03484 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.17486 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8812 -1.3818 10 1 6.5547 -0.3503 -0.7602 11 1 6.3829 0.9223 -2.8172 12 1 6.5569 2.0737 -0.6901 13 7 1.6525 2.0975 1.2518 14 6 0.4019 2.6799 1.3701 15 7 -0.4531 2.6531 0.3613 16 7 -1.6215 3.1753 0.4144 17 6 -2.0984 3.7812 1.4798 18 17 -3.6953 4.4621 1.4669 19 6 -1.2866 3.8863 2.6223 20 6 -1.6856 4.5264 3.8040 21 6 -0.8092 4.5656 4.8489 22 7 0.3960 4.0188 4.7740 23 6 0.8343 3.4037 3.6976 24 6 0.0137 3.3151 2.5695 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0604 -2.9503 31 1 2.2719 2.1232 1.9978 32 1 -2.6635 4.9775 3.8853 33 1 -1.1064 5.0558 5.7641 34 1 1.8246 2.9729 3.6839 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:06 Heat of formation + Delta-G solvation = 81.677243 kcal Electronic energy + Delta-G solvation = -20803.095702 eV Core-core repulsion = 17569.391348 eV Total energy + Delta-G solvation = -3233.704354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47638 -38.80377 -37.15376 -36.36541 -33.70525 -32.90852 -31.89708 -30.70997 -29.91123 -26.96685 -25.31138 -24.70136 -23.19153 -22.22546 -20.23863 -19.08578 -17.93210 -17.59983 -16.96609 -15.85564 -15.51392 -15.38914 -15.11616 -14.43747 -14.40735 -13.92309 -13.66205 -13.20697 -12.85451 -12.28794 -12.09940 -11.69708 -11.41429 -11.38066 -11.26853 -11.02083 -10.86424 -10.68235 -10.32362 -10.31878 -10.14318 -9.98443 -9.77273 -9.29891 -9.07454 -8.98851 -8.56229 -7.32713 -6.26686 -4.38061 0.27836 0.56576 1.74055 1.89273 3.10940 3.16613 3.23989 3.25446 3.48951 3.97616 4.07559 4.22254 4.32943 4.43115 4.52151 4.71724 5.01197 5.05554 5.26271 5.38532 5.50983 5.83526 5.92442 6.25624 6.30240 6.31753 6.50018 6.84981 6.95420 7.16773 7.27068 7.48472 7.56469 7.68881 7.72842 7.99372 8.17495 8.64307 9.19989 9.29654 10.78356 Molecular weight = 292.08amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.004698 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.496005 B = 5958.060501 C = 6804.387369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.063 0.937 5 C -0.543 4.543 6 H 0.063 0.937 7 C 0.072 3.928 8 N -0.877 5.877 9 Si 0.903 3.097 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.651 5.651 14 C 0.402 3.598 15 N -0.308 5.308 16 N -0.166 5.166 17 C 0.037 3.963 18 Cl -0.026 7.026 19 C 0.012 3.988 20 C -0.157 4.157 21 C 0.108 3.892 22 N -0.491 5.491 23 C 0.175 3.825 24 C -0.181 4.181 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.032 0.968 30 H 0.267 0.733 31 H 0.403 0.597 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 6.066 11.088 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.081 0.919 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.730 3.270 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.274 5.274 14 C 0.147 3.853 15 N -0.160 5.160 16 N -0.005 5.005 17 C -0.149 4.149 18 Cl 0.001 6.999 19 C -0.001 4.001 20 C -0.180 4.180 21 C -0.039 4.039 22 N -0.201 5.201 23 C 0.005 3.995 24 C -0.194 4.194 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.971 5.493 9.882 13.833 hybrid contribution 0.691 0.424 0.899 1.210 sum -7.280 5.916 10.781 14.291 Atomic orbital electron populations 1.21864 0.98099 0.98413 1.01104 1.21971 0.92767 0.99164 1.02724 1.19177 0.94853 0.89573 0.79718 0.91896 1.21134 0.90117 1.40091 1.06824 0.91925 1.24845 0.98815 0.94459 0.95169 1.69872 1.35349 1.36896 1.09234 0.86419 0.84454 0.78542 0.77566 1.20427 1.20920 1.19807 1.45737 1.09467 1.52845 1.19344 1.20316 0.89191 0.86809 0.88937 1.73220 0.97508 1.22101 1.23219 1.72123 1.06214 1.00722 1.21475 1.22761 0.90797 1.07857 0.93451 1.98341 1.20429 1.82746 1.98360 1.18329 0.92176 0.95061 0.94565 1.21811 1.02165 1.01206 0.92778 1.22424 0.88613 0.94564 0.98281 1.67580 1.16114 1.09445 1.26974 1.22936 0.98437 0.91649 0.86459 1.19436 0.96513 1.06007 0.97404 0.95502 0.95335 0.92030 0.87675 0.94910 0.92266 0.76084 0.83414 0.82227 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.45 37.15 0.31 -2.53 16 2 C -0.13 -2.85 5.45 -26.73 -0.15 -2.99 16 3 C 0.27 6.09 2.25 -69.08 -0.16 5.94 16 4 H 0.06 1.65 7.57 -51.93 -0.39 1.25 16 5 C -0.54 -13.25 8.73 -34.44 -0.30 -13.55 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.12 11.29 55.43 0.63 -22.50 16 9 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 N -0.65 -12.13 5.10 -54.67 -0.28 -12.41 16 14 C 0.40 7.37 6.15 -154.89 -0.95 6.42 16 15 N -0.31 -6.25 7.61 31.43 0.24 -6.01 16 16 N -0.17 -3.18 11.39 33.16 0.38 -2.81 16 17 C 0.04 0.60 7.45 -16.82 -0.13 0.48 16 18 Cl -0.03 -0.35 28.05 -51.86 -1.45 -1.80 16 19 C 0.01 0.18 5.76 -106.81 -0.62 -0.43 16 20 C -0.16 -1.83 9.58 -39.50 -0.38 -2.21 16 21 C 0.11 1.18 11.07 -17.89 -0.20 0.98 16 22 N -0.49 -6.34 10.30 -13.22 -0.14 -6.48 16 23 C 0.17 2.34 10.82 -17.12 -0.19 2.15 16 24 C -0.18 -2.84 5.76 -106.72 -0.62 -3.46 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.57 5.59 -51.92 -0.29 0.28 16 27 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 28 H 0.11 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.40 6.39 6.92 -40.82 -0.28 6.11 16 32 H 0.15 1.36 7.32 -52.49 -0.38 0.97 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.17 1.85 6.71 -52.49 -0.35 1.50 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -27.53 299.53 -7.81 -35.33 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.22 Total: 5.08 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.45 Total: -7.49 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.83 Total: -50.20 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.45 Total: -1.80 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.53 -7.81 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.010 kcal (2) G-P(sol) polarization free energy of solvation -27.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds