Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47045 * 2 1 4 4 H 1.08996 * 109.47492 * 304.99637 * 3 2 1 5 5 C 1.50698 * 109.47079 * 184.99786 * 3 2 1 6 6 H 1.08001 * 120.00443 * 239.99818 * 5 3 2 7 7 C 1.37880 * 119.99926 * 59.99924 * 5 3 2 8 8 N 1.31511 * 120.00004 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00207 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46590 * 90.00408 * 9 7 5 11 11 H 1.48499 * 109.47282 * 209.99830 * 9 7 5 12 12 H 1.48498 * 109.46921 * 330.00756 * 9 7 5 13 13 N 1.46499 * 109.47387 * 65.00332 * 3 2 1 14 14 C 1.38451 * 119.99594 * 275.00097 * 13 3 2 15 15 N 1.32268 * 120.67953 * 359.97438 * 14 13 3 16 16 N 1.28090 * 123.35327 * 180.02562 * 15 14 13 17 17 C 1.31515 * 123.51921 * 359.33459 * 16 15 14 18 18 Cl 1.73600 * 120.54295 * 180.02562 * 17 16 15 19 19 C 1.40552 * 118.91143 * 0.97613 * 17 16 15 20 20 C 1.40190 * 123.70285 * 179.07735 * 19 17 16 21 21 C 1.36426 * 118.41448 * 180.02562 * 20 19 17 22 22 N 1.32553 * 121.93208 * 359.97438 * 21 20 19 23 23 C 1.31493 * 122.83978 * 0.02562 * 22 21 20 24 24 C 1.39777 * 119.64123 * 0.28753 * 23 22 21 25 25 H 1.09000 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47254 * 300.00176 * 1 2 3 27 27 H 1.08998 * 109.47278 * 59.99983 * 1 2 3 28 28 H 1.08994 * 109.47087 * 239.99894 * 2 1 3 29 29 H 1.09005 * 109.47239 * 119.99611 * 2 1 3 30 30 H 0.97004 * 120.00616 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00364 * 94.99523 * 13 3 2 32 32 H 1.08002 * 120.78820 * 0.03940 * 20 19 17 33 33 H 1.07992 * 119.03484 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.17486 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8812 -1.3818 10 1 6.5547 -0.3503 -0.7602 11 1 6.3829 0.9223 -2.8172 12 1 6.5569 2.0737 -0.6901 13 7 1.6525 2.0975 1.2518 14 6 0.4019 2.6799 1.3701 15 7 -0.4531 2.6531 0.3613 16 7 -1.6215 3.1753 0.4144 17 6 -2.0984 3.7812 1.4798 18 17 -3.6953 4.4621 1.4669 19 6 -1.2866 3.8863 2.6223 20 6 -1.6856 4.5264 3.8040 21 6 -0.8092 4.5656 4.8489 22 7 0.3960 4.0188 4.7740 23 6 0.8343 3.4037 3.6976 24 6 0.0137 3.3151 2.5695 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0604 -2.9503 31 1 2.2719 2.1232 1.9978 32 1 -2.6635 4.9775 3.8853 33 1 -1.1064 5.0558 5.7641 34 1 1.8246 2.9729 3.6839 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = 65.155481 kcal Electronic energy + Delta-G solvation = -20803.812140 eV Core-core repulsion = 17569.391348 eV Total energy + Delta-G solvation = -3234.420791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.079 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.67513 -39.96557 -38.58969 -37.65674 -35.30547 -34.04305 -33.51844 -32.03428 -31.33455 -28.69902 -26.49136 -25.94581 -24.87015 -23.48906 -21.91993 -20.28796 -19.27001 -18.97477 -18.35296 -17.28039 -16.93349 -16.75675 -16.51297 -15.77893 -15.51263 -15.26355 -14.95354 -14.61555 -14.49461 -13.69921 -13.32381 -13.25389 -13.15948 -12.94076 -12.68741 -12.55347 -12.36040 -12.19073 -12.03373 -11.69511 -11.52599 -11.31944 -11.20598 -11.01662 -10.56160 -10.25173 -10.17526 -8.74363 -8.16736 -6.34011 -0.83093 -0.58537 0.56841 0.65694 1.45712 1.47054 1.56246 1.97435 2.09262 2.44658 2.79782 3.01674 3.13842 3.19037 3.37950 3.45551 3.58466 3.85263 4.20356 4.37947 4.52100 4.53156 4.54833 4.64954 4.78258 4.86402 5.05960 5.25144 5.38050 5.41077 5.56547 5.61734 5.80621 6.02497 6.20471 6.57470 6.69644 6.81533 7.36555 7.89025 8.88166 Molecular weight = 292.08amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.004698 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.496005 B = 5958.060501 C = 6804.387369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.282 3.718 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.656 5.656 14 C 0.395 3.605 15 N -0.352 5.352 16 N -0.210 5.210 17 C 0.052 3.948 18 Cl 0.002 6.998 19 C -0.009 4.009 20 C -0.144 4.144 21 C 0.119 3.881 22 N -0.492 5.492 23 C 0.173 3.827 24 C -0.188 4.188 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.415 0.585 32 H 0.177 0.823 33 H 0.206 0.794 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 7.411 14.185 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.037 0.963 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.283 5.283 14 C 0.141 3.859 15 N -0.202 5.202 16 N -0.046 5.046 17 C -0.137 4.137 18 Cl 0.029 6.971 19 C -0.022 4.022 20 C -0.166 4.166 21 C -0.028 4.028 22 N -0.202 5.202 23 C 0.004 3.996 24 C -0.200 4.200 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.254 0.746 32 H 0.194 0.806 33 H 0.223 0.777 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.352 6.850 12.985 16.890 hybrid contribution 0.578 0.188 0.127 0.621 sum -7.774 7.038 13.112 16.789 Atomic orbital electron populations 1.21668 0.96922 0.98914 1.00266 1.21802 0.93683 0.98913 1.01461 1.18629 0.93844 0.89315 0.80317 0.96300 1.21512 0.91167 1.39395 1.06907 0.90952 1.25651 1.02879 0.94312 0.95005 1.70023 1.36953 1.37989 1.09768 0.85434 0.79548 0.78788 0.77103 1.19797 1.21422 1.19041 1.45218 1.10343 1.54271 1.18461 1.20358 0.88662 0.87127 0.89785 1.73064 0.98438 1.23801 1.24881 1.72026 1.06400 1.02981 1.23187 1.23154 0.91747 1.05597 0.93168 1.98348 1.18361 1.82054 1.98291 1.18600 0.91929 0.96146 0.95507 1.22158 1.03447 0.99764 0.91276 1.23184 0.87341 0.92842 0.99443 1.67709 1.17102 1.09026 1.26347 1.23205 0.98945 0.91675 0.85778 1.19505 0.97370 1.06060 0.97076 0.94090 0.94948 0.94104 0.90543 0.94282 0.92511 0.74627 0.80596 0.77739 0.79721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.45 71.98 0.61 -4.56 16 2 C -0.12 -5.55 5.45 30.59 0.17 -5.38 16 3 C 0.28 13.36 2.25 44.25 0.10 13.46 16 4 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 5 C -0.55 -27.40 8.73 25.60 0.22 -27.18 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.16 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.81 11.29 21.45 0.24 -49.56 16 9 Si 0.97 40.52 29.54 68.60 2.03 42.55 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 13 N -0.66 -24.98 5.10 -326.88 -1.67 -26.65 16 14 C 0.40 14.77 6.15 133.79 0.82 15.60 16 15 N -0.35 -14.89 7.61 -54.49 -0.41 -15.31 16 16 N -0.21 -8.25 11.39 -49.01 -0.56 -8.81 16 17 C 0.05 1.65 7.45 85.30 0.64 2.28 16 18 Cl 0.00 0.04 28.05 -2.72 -0.08 -0.03 16 19 C -0.01 -0.24 5.76 -21.28 -0.12 -0.36 16 20 C -0.14 -2.78 9.58 22.32 0.21 -2.57 16 21 C 0.12 2.03 11.07 84.16 0.93 2.96 16 22 N -0.49 -10.89 10.30 -195.75 -2.02 -12.90 16 23 C 0.17 4.24 10.82 85.12 0.92 5.16 16 24 C -0.19 -5.71 5.76 -21.22 -0.12 -5.83 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 1.34 5.59 -2.38 -0.01 1.33 16 27 H 0.04 1.89 7.70 -2.39 -0.02 1.88 16 28 H 0.08 4.01 5.95 -2.39 -0.01 4.00 16 29 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 31 H 0.41 13.14 6.92 -92.71 -0.64 12.50 16 32 H 0.18 2.37 7.32 -2.91 -0.02 2.34 16 33 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.19 3.72 6.71 -2.91 -0.02 3.70 16 Total: -1.00 -62.19 299.53 2.88 -59.30 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.52 Total: 16.22 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.83 Total: -4.81 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.41 Total: -113.23 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.03 kcal Total: -62.19 2.88 -59.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.460 kcal (2) G-P(sol) polarization free energy of solvation -62.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds