Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 120.00221 * 2 1 4 4 H 1.08002 * 120.00236 * 203.03190 * 3 2 1 5 5 C 1.38817 * 119.99571 * 23.03272 * 3 2 1 6 6 N 1.31619 * 120.00377 * 12.95003 * 5 3 2 7 7 Si 1.86802 * 119.99831 * 192.94392 * 5 3 2 8 8 H 1.48498 * 109.46799 * 60.00335 * 7 5 3 9 9 H 1.48503 * 109.47068 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47128 * 300.00362 * 7 5 3 11 11 C 1.46505 * 120.00283 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47027 * 90.00090 * 11 2 1 13 13 C 1.35234 * 126.66267 * 90.00378 * 12 11 2 14 14 C 1.42284 * 103.93490 * 179.97438 * 13 12 11 15 15 C 1.48434 * 126.93530 * 179.97438 * 14 13 12 16 16 C 1.39348 * 120.11553 * 180.02562 * 15 14 13 17 17 C 1.38003 * 119.90687 * 179.72964 * 16 15 14 18 18 C 1.38319 * 120.13250 * 0.25426 * 17 16 15 19 19 C 1.38415 * 120.23175 * 359.97438 * 18 17 16 20 20 Cl 1.73593 * 119.95347 * 180.02562 * 19 18 17 21 21 C 1.38161 * 120.08931 * 359.97438 * 19 18 17 22 22 N 1.30986 * 106.12532 * 0.26445 * 14 13 12 23 23 O 1.20907 * 111.42601 * 359.53431 * 22 14 13 24 24 H 1.08993 * 109.47381 * 275.12351 * 1 2 3 25 25 H 1.09003 * 109.47283 * 35.12338 * 1 2 3 26 26 H 1.08998 * 109.47161 * 155.12136 * 1 2 3 27 27 H 0.96992 * 120.00204 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46451 * 330.00311 * 11 2 1 29 29 H 1.08997 * 109.47084 * 209.99882 * 11 2 1 30 30 H 1.07998 * 128.02601 * 359.97438 * 13 12 11 31 31 H 1.07996 * 120.04250 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.92874 * 180.27819 * 17 16 15 33 33 H 1.08008 * 119.88391 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.06947 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3659 5 6 1.5386 2.3401 0.4704 6 7 0.4117 2.2598 1.1458 7 14 2.3156 4.0074 0.1450 8 1 2.4191 4.2277 -1.3199 9 1 1.4739 5.0720 0.7479 10 1 3.6717 4.0478 0.7487 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 6 3.5228 -1.3934 -2.1827 14 6 3.2658 -2.0470 -3.4201 15 6 4.1284 -2.0412 -4.6280 16 6 3.7355 -2.7343 -5.7712 17 6 4.5382 -2.7214 -6.8937 18 6 5.7340 -2.0264 -6.8842 19 6 6.1321 -1.3399 -5.7501 20 17 7.6340 -0.4694 -5.7464 21 6 5.3352 -1.3456 -4.6215 22 7 2.1112 -2.6497 -3.2803 23 8 1.6510 -2.4719 -2.1764 24 1 -0.3634 0.0918 1.0235 25 1 -0.3634 0.8406 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0151 3.0663 1.4747 28 1 1.6084 -2.0286 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 4.3772 -0.7901 -1.9136 31 1 2.8017 -3.2769 -5.7803 32 1 4.2318 -3.2548 -7.7814 33 1 6.3590 -2.0186 -7.7651 34 1 5.6460 -0.8096 -3.7369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237774828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = 100.577312 kcal Electronic energy + Delta-G solvation = -19995.589690 eV Core-core repulsion = 16730.412153 eV Total energy + Delta-G solvation = -3265.177536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.072 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.37722 -39.39657 -36.66857 -35.91753 -34.11335 -32.41988 -31.07296 -30.62588 -30.13955 -26.50667 -25.84098 -24.10707 -23.17943 -21.96998 -21.50448 -19.88827 -17.45959 -17.13682 -16.73806 -16.32578 -15.85103 -15.35774 -14.95196 -14.37424 -13.92557 -13.76305 -13.66139 -13.45817 -13.30455 -12.81275 -12.00324 -11.90893 -11.84246 -11.70145 -11.31767 -11.09701 -10.99740 -10.94551 -10.70241 -10.50858 -10.46514 -10.11476 -10.04024 -9.04098 -8.95679 -8.66613 -8.54601 -6.98841 -5.85986 -3.35818 0.69888 1.00264 1.91279 2.05810 2.67291 3.32497 3.38842 3.40193 3.62737 3.63244 4.13497 4.40933 4.53365 4.79683 4.85220 5.00049 5.17621 5.30853 5.43822 5.49340 5.55578 5.59214 5.72830 5.89579 6.01971 6.14258 6.22705 6.33608 6.39539 6.46815 6.55208 6.68139 7.27467 7.61655 7.69940 8.23006 8.64782 9.07050 9.67877 10.14746 11.18532 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.004242 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.419072 B = 6599.071698 C = 7952.394442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.583 5.583 3 C -0.270 4.270 4 H 0.070 0.930 5 C 0.011 3.989 6 N -0.901 5.901 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.216 3.784 12 C -0.009 4.009 13 C -0.229 4.229 14 C 0.040 3.960 15 C 0.010 3.990 16 C -0.093 4.093 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.033 4.033 20 Cl -0.069 7.069 21 C -0.088 4.088 22 N -0.370 5.370 23 O 0.099 5.901 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.004 0.996 27 H 0.256 0.744 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -9.558 -12.147 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.304 5.304 3 C -0.399 4.399 4 H 0.088 0.912 5 C -0.188 4.188 6 N -0.545 5.545 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.214 1.214 10 H -0.206 1.206 11 C 0.085 3.915 12 C -0.076 4.076 13 C -0.253 4.253 14 C -0.116 4.116 15 C 0.009 3.991 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.060 4.060 20 Cl -0.040 7.040 21 C -0.108 4.108 22 N -0.074 5.074 23 O 0.032 5.968 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.184 0.816 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.711 -10.061 -12.811 18.473 hybrid contribution 1.095 1.702 0.004 2.023 sum 9.806 -8.360 -12.807 18.168 Atomic orbital electron populations 1.20939 0.81833 0.96084 1.00018 1.43983 1.02245 1.00016 1.84122 1.19128 0.98481 0.85383 1.36923 0.91186 1.25016 0.97599 0.98626 0.97571 1.70056 1.19174 1.27726 1.37500 0.86319 0.78588 0.83441 0.78108 1.20933 1.21429 1.20639 1.19477 0.98833 0.89391 0.83827 1.27000 0.89138 0.91796 0.99708 1.22347 1.02988 1.07269 0.92657 1.21765 0.93822 1.00703 0.95295 1.17625 0.92590 0.97744 0.91148 1.21358 1.00064 0.97915 0.91924 1.21041 0.93816 0.99231 0.98481 1.21116 0.97293 0.97301 0.97167 1.20730 0.89695 0.99559 0.95995 1.98375 1.31626 1.75264 1.98730 1.21044 0.92958 0.98924 0.97908 1.73996 1.11145 1.21569 1.00644 1.84762 1.42350 1.52694 1.16946 0.94194 0.93868 0.97708 0.93393 0.91665 0.89234 0.81647 0.84767 0.84695 0.84812 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.71 8.98 59.84 0.54 4.25 16 2 N -0.58 -13.94 2.91 -182.51 -0.53 -14.47 16 3 C -0.27 -7.06 9.65 -15.06 -0.15 -7.21 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.01 0.30 5.10 -17.43 -0.09 0.22 16 6 N -0.90 -25.34 10.71 55.49 0.59 -24.75 16 7 Si 0.91 21.26 29.57 -169.99 -5.03 16.23 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 C 0.22 4.09 6.20 -5.19 -0.03 4.06 16 12 C -0.01 -0.17 7.05 -35.38 -0.25 -0.42 16 13 C -0.23 -3.97 10.45 -39.10 -0.41 -4.38 16 14 C 0.04 0.69 7.06 -82.47 -0.58 0.10 16 15 C 0.01 0.15 5.88 -104.89 -0.62 -0.47 16 16 C -0.09 -1.17 9.70 -39.25 -0.38 -1.55 16 17 C -0.11 -1.07 10.03 -39.64 -0.40 -1.47 16 18 C -0.11 -1.09 9.82 -39.49 -0.39 -1.48 16 19 C -0.03 -0.39 6.31 -39.54 -0.25 -0.64 16 20 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 21 C -0.09 -1.15 9.38 -39.22 -0.37 -1.52 16 22 N -0.37 -6.78 11.82 33.32 0.39 -6.38 16 23 O 0.10 1.87 11.18 17.12 0.19 2.06 16 24 H 0.04 1.01 7.34 -51.93 -0.38 0.63 16 25 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 26 H 0.00 0.09 8.03 -51.93 -0.42 -0.33 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 30 H 0.17 2.57 7.58 -52.49 -0.40 2.17 16 31 H 0.13 1.65 7.89 -52.49 -0.41 1.23 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.14 1.75 7.23 -52.49 -0.38 1.37 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -29.13 315.89 -8.09 -37.22 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.60 Total: -1.92 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.37 Total: -10.50 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.46 Total: -45.60 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.19 Total: 2.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.13 -8.09 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237774828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.799 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds