Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99870 * 2 1 4 4 H 1.07996 * 120.00017 * 202.35032 * 3 2 1 5 5 C 1.38810 * 119.99941 * 22.35587 * 3 2 1 6 6 N 1.31611 * 120.00338 * 11.33339 * 5 3 2 7 7 Si 1.86801 * 119.99732 * 191.33315 * 5 3 2 8 8 H 1.48500 * 109.47221 * 60.00229 * 7 5 3 9 9 H 1.48500 * 109.47099 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47474 * 299.99795 * 7 5 3 11 11 C 1.46499 * 119.99810 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47102 * 269.99690 * 11 2 1 13 13 C 1.33729 * 122.07555 * 95.00400 * 12 11 2 14 14 S 1.76254 * 108.21804 * 179.97438 * 13 12 11 15 15 C 1.76173 * 89.83896 * 0.02562 * 14 13 12 16 16 C 1.47870 * 125.47189 * 179.73033 * 15 14 13 17 17 C 1.39571 * 120.13177 * 0.03085 * 16 15 14 18 18 C 1.37948 * 119.90521 * 179.97438 * 17 16 15 19 19 C 1.38332 * 120.17678 * 359.97438 * 18 17 16 20 20 C 1.38551 * 120.25865 * 359.97438 * 19 18 17 21 21 F 1.35101 * 119.95405 * 180.02562 * 20 19 18 22 22 C 1.38216 * 120.09072 * 359.79194 * 20 19 18 23 23 N 1.30229 * 109.05374 * 0.02562 * 15 14 13 24 24 H 1.08993 * 109.46965 * 274.21009 * 1 2 3 25 25 H 1.09001 * 109.46991 * 34.21269 * 1 2 3 26 26 H 1.09004 * 109.46608 * 154.21127 * 1 2 3 27 27 H 0.97000 * 120.00441 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47073 * 150.00245 * 11 2 1 29 29 H 1.08998 * 109.47431 * 30.00412 * 11 2 1 30 30 H 1.08003 * 125.89208 * 359.97438 * 13 12 11 31 31 H 1.07997 * 120.04453 * 359.97438 * 17 16 15 32 32 H 1.08010 * 119.91049 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.87064 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.08751 * 180.25820 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3428 0.4572 6 7 0.3842 2.2690 1.0937 7 14 2.3368 4.0046 0.1692 8 1 2.4917 4.2333 -1.2899 9 1 1.4846 5.0734 0.7495 10 1 3.6722 4.0285 0.8185 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 1.6361 -2.5547 2.0563 14 16 2.2686 -2.8097 3.6816 15 6 3.6015 -1.7128 3.3295 16 6 4.6824 -1.3463 4.2697 17 6 4.7022 -1.8828 5.5580 18 6 5.7130 -1.5380 6.4311 19 6 6.7073 -0.6626 6.0329 20 6 6.6952 -0.1267 4.7553 21 9 7.6696 0.7273 4.3727 22 6 5.6902 -0.4684 3.8700 23 7 3.4785 -1.2718 2.1103 24 1 -0.3633 0.0754 1.0248 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0460 3.0774 1.4136 28 1 3.1499 -1.1382 -0.5143 29 1 1.6085 -2.0282 -0.5148 30 1 0.7457 -3.0072 1.6452 31 1 3.9271 -2.5667 5.8709 32 1 5.7282 -1.9528 7.4283 33 1 7.4966 -0.3964 6.7204 34 1 5.6831 -0.0539 2.8728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237972763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = 52.385536 kcal Electronic energy + Delta-G solvation = -20145.626104 eV Core-core repulsion = 16892.775311 eV Total energy + Delta-G solvation = -3252.850793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.074 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -48.86337 -39.51375 -38.53353 -35.40793 -32.47717 -31.16384 -30.64106 -29.11219 -26.63524 -25.66098 -24.85528 -22.80301 -22.03072 -20.92397 -18.88413 -17.98161 -16.80871 -16.57100 -16.24798 -16.05254 -15.57684 -15.06396 -14.82079 -14.21986 -13.90772 -13.44032 -13.38987 -13.29168 -13.10045 -12.71220 -12.23767 -12.06828 -11.86069 -11.48705 -11.22740 -10.87972 -10.76704 -10.64608 -10.41331 -10.04735 -9.90703 -9.59392 -9.21533 -8.87701 -8.80379 -8.57131 -7.87965 -6.85005 -5.76088 -3.18884 0.43606 1.14049 1.64201 1.72971 2.14167 3.28049 3.41481 3.44656 3.46705 3.77282 4.11520 4.29421 4.51356 4.69432 4.91528 5.00787 5.26339 5.34104 5.47846 5.63516 5.68997 5.74508 5.92460 5.96803 6.07486 6.16093 6.26680 6.35752 6.60967 6.68797 6.75874 6.79207 7.32565 7.67455 7.81509 8.29735 8.37555 9.19564 9.79752 10.27315 11.28877 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.005815 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.441864 B = 4813.775173 C = 6358.600592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.583 5.583 3 C -0.244 4.244 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.209 3.791 12 C 0.072 3.928 13 C -0.242 4.242 14 S 0.036 5.964 15 C 0.093 3.907 16 C 0.022 3.978 17 C -0.115 4.115 18 C -0.090 4.090 19 C -0.150 4.150 20 C 0.099 3.901 21 F -0.138 7.138 22 C -0.110 4.110 23 N -0.422 5.422 24 H 0.028 0.972 25 H 0.050 0.950 26 H -0.001 1.001 27 H 0.253 0.747 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.171 0.829 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.450 -11.092 8.852 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.302 5.302 3 C -0.374 4.374 4 H 0.091 0.909 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.078 3.922 12 C -0.063 4.063 13 C -0.382 4.382 14 S 0.291 5.709 15 C -0.183 4.183 16 C 0.018 3.982 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.170 4.170 20 C 0.080 3.920 21 F -0.116 7.116 22 C -0.132 4.132 23 N -0.135 5.135 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.188 0.812 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.325 -11.139 9.466 16.350 hybrid contribution 0.103 1.469 -0.666 1.616 sum 7.428 -9.669 8.800 15.037 Atomic orbital electron populations 1.20874 0.82083 0.95919 0.99455 1.44236 1.02081 1.00431 1.83465 1.19229 0.98188 0.84658 1.35328 0.90949 1.25075 0.97660 0.98766 0.98098 1.70053 1.17773 1.27348 1.39947 0.86297 0.78700 0.83433 0.77964 1.20879 1.21632 1.20747 1.19797 0.97083 0.88670 0.86625 1.21843 0.89260 0.92750 1.02475 1.26718 1.07368 1.08740 0.95345 1.84377 1.23086 1.46624 1.16850 1.25586 0.98124 1.00380 0.94181 1.17635 0.92003 0.96726 0.91828 1.21214 0.99415 1.00520 0.92393 1.20815 0.93332 0.97000 0.99695 1.21217 1.01117 0.99645 0.95002 1.17560 0.87964 0.92605 0.93908 1.91514 1.60508 1.67968 1.91627 1.21335 0.92720 0.97915 1.01217 1.66352 1.22076 1.21205 1.03850 0.95356 0.93117 0.98231 0.93643 0.91761 0.92252 0.81190 0.85136 0.84539 0.84619 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 9.01 59.85 0.54 4.47 16 2 N -0.58 -14.70 2.91 -182.51 -0.53 -15.23 16 3 C -0.24 -6.79 9.67 -15.06 -0.15 -6.94 16 4 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -26.76 10.58 55.49 0.59 -26.18 16 7 Si 0.91 22.44 29.57 -169.99 -5.03 17.41 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 C 0.21 4.38 6.12 -5.20 -0.03 4.34 16 12 C 0.07 1.48 6.27 -84.40 -0.53 0.95 16 13 C -0.24 -4.28 11.06 29.15 0.32 -3.95 16 14 S 0.04 0.57 22.40 -107.50 -2.41 -1.84 16 15 C 0.09 1.68 7.35 -14.29 -0.11 1.58 16 16 C 0.02 0.35 5.87 -104.99 -0.62 -0.27 16 17 C -0.11 -1.41 9.60 -39.19 -0.38 -1.78 16 18 C -0.09 -0.91 10.03 -39.65 -0.40 -1.31 16 19 C -0.15 -1.65 10.02 -39.43 -0.40 -2.05 16 20 C 0.10 1.38 7.29 -39.47 -0.29 1.09 16 21 F -0.14 -2.01 17.26 2.25 0.04 -1.97 16 22 C -0.11 -1.75 9.66 -39.12 -0.38 -2.13 16 23 N -0.42 -8.88 10.11 -7.55 -0.08 -8.96 16 24 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 25 H 0.05 1.33 7.19 -51.93 -0.37 0.95 16 26 H 0.00 -0.02 7.84 -51.93 -0.41 -0.42 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.06 1.33 8.03 -51.93 -0.42 0.92 16 29 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 30 H 0.17 2.60 8.06 -52.48 -0.42 2.17 16 31 H 0.13 1.38 7.30 -52.49 -0.38 1.00 16 32 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.15 2.64 7.82 -52.49 -0.41 2.22 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -31.47 314.98 -8.76 -40.23 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.60 Total: -2.21 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.49 Total: -6.00 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.02 Total: -50.37 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.41 Total: -1.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.47 -8.76 -40.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237972763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.614 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds