Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99870 * 2 1 4 4 H 1.07996 * 120.00017 * 202.35032 * 3 2 1 5 5 C 1.38810 * 119.99941 * 22.35587 * 3 2 1 6 6 N 1.31611 * 120.00338 * 11.33339 * 5 3 2 7 7 Si 1.86801 * 119.99732 * 191.33315 * 5 3 2 8 8 H 1.48500 * 109.47221 * 60.00229 * 7 5 3 9 9 H 1.48500 * 109.47099 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47474 * 299.99795 * 7 5 3 11 11 C 1.46499 * 119.99810 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47102 * 269.99690 * 11 2 1 13 13 C 1.33729 * 122.07555 * 95.00400 * 12 11 2 14 14 S 1.76254 * 108.21804 * 179.97438 * 13 12 11 15 15 C 1.76173 * 89.83896 * 0.02562 * 14 13 12 16 16 C 1.47870 * 125.47189 * 179.73033 * 15 14 13 17 17 C 1.39571 * 120.13177 * 0.03085 * 16 15 14 18 18 C 1.37948 * 119.90521 * 179.97438 * 17 16 15 19 19 C 1.38332 * 120.17678 * 359.97438 * 18 17 16 20 20 C 1.38551 * 120.25865 * 359.97438 * 19 18 17 21 21 F 1.35101 * 119.95405 * 180.02562 * 20 19 18 22 22 C 1.38216 * 120.09072 * 359.79194 * 20 19 18 23 23 N 1.30229 * 109.05374 * 0.02562 * 15 14 13 24 24 H 1.08993 * 109.46965 * 274.21009 * 1 2 3 25 25 H 1.09001 * 109.46991 * 34.21269 * 1 2 3 26 26 H 1.09004 * 109.46608 * 154.21127 * 1 2 3 27 27 H 0.97000 * 120.00441 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47073 * 150.00245 * 11 2 1 29 29 H 1.08998 * 109.47431 * 30.00412 * 11 2 1 30 30 H 1.08003 * 125.89208 * 359.97438 * 13 12 11 31 31 H 1.07997 * 120.04453 * 359.97438 * 17 16 15 32 32 H 1.08010 * 119.91049 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.87064 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.08751 * 180.25820 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3428 0.4572 6 7 0.3842 2.2690 1.0937 7 14 2.3368 4.0046 0.1692 8 1 2.4917 4.2333 -1.2899 9 1 1.4846 5.0734 0.7495 10 1 3.6722 4.0285 0.8185 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 1.6361 -2.5547 2.0563 14 16 2.2686 -2.8097 3.6816 15 6 3.6015 -1.7128 3.3295 16 6 4.6824 -1.3463 4.2697 17 6 4.7022 -1.8828 5.5580 18 6 5.7130 -1.5380 6.4311 19 6 6.7073 -0.6626 6.0329 20 6 6.6952 -0.1267 4.7553 21 9 7.6696 0.7273 4.3727 22 6 5.6902 -0.4684 3.8700 23 7 3.4785 -1.2718 2.1103 24 1 -0.3633 0.0754 1.0248 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0460 3.0774 1.4136 28 1 3.1499 -1.1382 -0.5143 29 1 1.6085 -2.0282 -0.5148 30 1 0.7457 -3.0072 1.6452 31 1 3.9271 -2.5667 5.8709 32 1 5.7282 -1.9528 7.4283 33 1 7.4966 -0.3964 6.7204 34 1 5.6831 -0.0539 2.8728 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237972763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = 34.102581 kcal Electronic energy + Delta-G solvation = -20146.418912 eV Core-core repulsion = 16892.775311 eV Total energy + Delta-G solvation = -3253.643601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.074 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.96519 -40.83217 -39.69259 -37.28036 -33.93287 -32.86042 -31.66543 -30.55684 -28.36418 -27.62849 -26.13085 -23.92266 -23.55430 -22.42275 -20.27226 -19.19747 -18.78808 -17.92103 -17.24220 -17.13313 -16.92211 -16.68086 -16.23940 -15.86002 -15.30577 -15.14038 -14.82887 -14.66846 -14.42671 -13.97221 -13.71282 -13.38405 -13.31485 -12.93975 -12.81882 -12.66428 -12.35561 -12.25495 -12.21056 -12.07447 -11.84531 -10.79441 -10.68353 -10.59553 -10.13350 -9.89869 -9.16231 -8.85868 -7.87507 -5.33611 -0.75671 0.12318 0.36676 0.49012 0.74591 1.40098 1.42419 1.48283 1.94550 2.48246 2.64241 2.95896 3.21588 3.30276 3.74929 3.79745 3.90077 4.04902 4.15945 4.29898 4.33623 4.44793 4.71949 4.78270 4.81377 4.96089 5.01805 5.06522 5.16820 5.21709 5.31041 5.39014 5.59412 5.70186 5.80306 6.28315 6.93439 7.12693 7.80849 8.22212 9.15660 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.005815 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.441864 B = 4813.775173 C = 6358.600592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.247 4.247 4 H 0.063 0.937 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.962 3.038 8 H -0.273 1.273 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.210 3.790 12 C 0.044 3.956 13 C -0.245 4.245 14 S 0.118 5.882 15 C 0.076 3.924 16 C -0.008 4.008 17 C -0.107 4.107 18 C -0.072 4.072 19 C -0.132 4.132 20 C 0.081 3.919 21 F -0.148 7.148 22 C -0.135 4.135 23 N -0.473 5.473 24 H -0.001 1.001 25 H 0.022 0.978 26 H 0.040 0.960 27 H 0.247 0.753 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.196 0.804 31 H 0.152 0.848 32 H 0.187 0.813 33 H 0.171 0.829 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 -13.166 11.547 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.378 4.378 4 H 0.081 0.919 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.790 3.210 8 H -0.198 1.198 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.080 3.920 12 C -0.091 4.091 13 C -0.385 4.385 14 S 0.374 5.626 15 C -0.198 4.198 16 C -0.012 4.012 17 C -0.128 4.128 18 C -0.090 4.090 19 C -0.151 4.151 20 C 0.062 3.938 21 F -0.126 7.126 22 C -0.158 4.158 23 N -0.188 5.188 24 H 0.017 0.983 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.213 0.787 31 H 0.169 0.831 32 H 0.204 0.796 33 H 0.189 0.811 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.869 -13.261 12.162 19.639 hybrid contribution 0.063 1.881 -1.365 2.325 sum 7.932 -11.380 10.797 17.578 Atomic orbital electron populations 1.20597 0.81922 0.96669 0.97492 1.44296 1.02403 1.01118 1.84517 1.19364 0.97739 0.86257 1.34434 0.91927 1.25711 0.98473 1.01611 0.98765 1.70209 1.19066 1.27356 1.41766 0.85426 0.77415 0.79998 0.78161 1.19826 1.21701 1.21171 1.19809 0.96741 0.87789 0.87631 1.21610 0.90551 0.94841 1.02072 1.27099 1.07064 1.07396 0.96916 1.83946 1.20467 1.44204 1.13970 1.26123 0.99423 1.00371 0.93906 1.17823 0.91888 0.98317 0.93192 1.21524 1.00428 0.99916 0.90889 1.21373 0.91285 0.95256 1.01056 1.21664 1.01794 0.98052 0.93608 1.17797 0.87600 0.93333 0.95087 1.91484 1.60769 1.68444 1.91941 1.21184 0.94588 0.99443 1.00551 1.66315 1.23456 1.23281 1.05728 0.98279 0.95935 0.94156 0.94387 0.92799 0.88961 0.78690 0.83064 0.79624 0.81149 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.80 9.01 127.77 1.15 9.95 16 2 N -0.60 -31.05 2.91 -731.32 -2.13 -33.17 16 3 C -0.25 -14.27 9.67 84.03 0.81 -13.46 16 4 H 0.06 3.63 7.84 -2.91 -0.02 3.61 16 5 C -0.05 -2.98 5.13 84.86 0.44 -2.55 16 6 N -0.94 -57.29 10.58 21.65 0.23 -57.06 16 7 Si 0.96 47.75 29.57 68.60 2.03 49.78 16 8 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 11 C 0.21 8.86 6.12 85.63 0.52 9.38 16 12 C 0.04 1.82 6.27 41.61 0.26 2.08 16 13 C -0.25 -8.26 11.06 66.80 0.74 -7.52 16 14 S 0.12 3.41 22.40 -56.49 -1.27 2.15 16 15 C 0.08 2.76 7.35 87.48 0.64 3.40 16 16 C -0.01 -0.25 5.87 -20.10 -0.12 -0.37 16 17 C -0.11 -2.27 9.60 22.52 0.22 -2.06 16 18 C -0.07 -1.10 10.03 22.22 0.22 -0.88 16 19 C -0.13 -2.42 10.02 22.37 0.22 -2.20 16 20 C 0.08 2.22 7.29 22.34 0.16 2.39 16 21 F -0.15 -4.36 17.26 44.97 0.78 -3.58 16 22 C -0.14 -4.49 9.66 22.57 0.22 -4.27 16 23 N -0.47 -20.57 10.11 -177.79 -1.80 -22.37 16 24 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 25 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 26 H 0.04 1.62 7.84 -2.38 -0.02 1.60 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 29 H 0.09 3.18 7.81 -2.39 -0.02 3.16 16 30 H 0.20 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.15 2.51 7.30 -2.91 -0.02 2.49 16 32 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.12 4.54 7.82 -2.91 -0.02 4.51 16 Total: -1.00 -72.96 314.98 4.46 -68.51 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.12 Total: 1.86 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.49 Total: -6.10 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.70 Total: -112.61 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.27 Total: 2.15 kcal Total: -72.96 4.46 -68.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237972763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.609 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds