Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36296 * 119.99798 * 278.83338 * 3 2 1 5 5 C 1.46642 * 120.00103 * 352.79706 * 4 3 2 6 6 C 1.40171 * 120.11352 * 330.89675 * 5 4 3 7 7 C 1.37082 * 119.88256 * 179.73886 * 6 5 4 8 8 C 1.39211 * 120.11372 * 0.53826 * 7 6 5 9 9 O 1.35552 * 119.88332 * 179.73792 * 8 7 6 10 10 C 1.34781 * 116.99869 * 185.98040 * 9 8 7 11 11 H 1.07999 * 120.00105 * 354.90940 * 10 9 8 12 12 C 1.38704 * 119.99798 * 174.90765 * 10 9 8 13 13 N 1.31519 * 120.00260 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46950 * 59.99737 * 14 12 10 16 16 H 1.48498 * 109.47326 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46789 * 299.99634 * 14 12 10 18 18 C 1.39212 * 120.22831 * 359.71820 * 8 7 6 19 19 C 1.37079 * 120.11785 * 0.02562 * 18 8 7 20 20 C 1.47982 * 120.00109 * 98.83414 * 3 2 1 21 21 C 1.39543 * 119.74362 * 0.02562 * 20 3 2 22 22 C 1.38319 * 119.05468 * 179.79249 * 21 20 3 23 23 C 1.38853 * 118.52602 * 0.42204 * 22 21 20 24 24 C 1.38241 * 119.40545 * 359.52886 * 23 22 21 25 25 N 1.31768 * 120.90719 * 0.27263 * 24 23 22 26 26 H 1.07997 * 119.99847 * 172.80460 * 4 3 2 27 27 H 1.08002 * 120.05335 * 359.97438 * 6 5 4 28 28 H 1.08001 * 119.94159 * 180.23149 * 7 6 5 29 29 H 0.97003 * 119.99975 * 180.02562 * 13 12 10 30 30 H 1.07999 * 119.94203 * 180.02562 * 18 8 7 31 31 H 1.07994 * 120.06010 * 179.97438 * 19 18 8 32 32 H 1.07995 * 120.47610 * 359.97438 * 21 20 3 33 33 H 1.07998 * 120.73656 * 180.22689 * 22 21 20 34 34 H 1.08007 * 120.29677 * 179.80852 * 23 22 21 35 35 H 1.07996 * 119.54557 * 180.25732 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2496 -0.1803 1.1664 5 6 2.5250 -0.2175 2.4408 6 6 1.3274 0.4954 2.5899 7 6 0.6512 0.4529 3.7816 8 6 1.1578 -0.2875 4.8461 9 8 0.4880 -0.3219 6.0241 10 6 1.0899 -0.9525 7.0520 11 1 2.0236 -1.4719 6.8947 12 6 0.5102 -0.9343 8.3120 13 7 -0.6271 -0.3021 8.5036 14 14 1.3448 -1.8076 9.7368 15 1 2.6931 -1.2241 9.9537 16 1 0.5295 -1.6394 10.9665 17 1 1.4757 -3.2532 9.4230 18 6 2.3495 -0.9929 4.7049 19 6 3.0308 -0.9613 3.5158 20 6 3.3079 0.1978 -1.2663 21 6 2.6047 0.3831 -2.4573 22 6 3.3106 0.5704 -3.6320 23 6 4.6981 0.5578 -3.5810 24 6 5.3310 0.3698 -2.3665 25 7 4.6358 0.1976 -1.2605 26 1 4.3232 -0.2962 1.1520 27 1 0.9362 1.0740 1.7662 28 1 -0.2736 0.9988 3.8964 29 1 -1.0323 -0.2891 9.3848 30 1 2.7381 -1.5662 5.5336 31 1 3.9554 -1.5086 3.4073 32 1 1.5248 0.3833 -2.4614 33 1 2.7940 0.7200 -4.5685 34 1 5.2777 0.6981 -4.4815 35 1 6.4101 0.3637 -2.3236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007918749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = 83.854139 kcal Electronic energy + Delta-G solvation = -20610.747816 eV Core-core repulsion = 17347.277957 eV Total energy + Delta-G solvation = -3263.469858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26762 -39.32129 -37.59064 -36.10302 -34.02435 -32.60467 -32.43343 -30.99728 -30.49680 -28.03037 -25.79175 -24.32190 -23.48777 -22.55190 -21.76623 -20.64927 -18.28980 -18.03881 -17.19481 -16.27268 -16.15274 -15.25277 -15.01726 -14.76762 -14.38627 -14.29848 -14.14985 -13.89089 -13.62972 -13.28975 -13.14365 -12.81379 -12.79469 -12.28114 -12.11860 -11.91862 -11.86481 -11.60142 -11.11913 -10.98616 -10.78157 -10.59478 -10.24677 -9.91691 -9.63411 -9.54305 -9.12447 -8.55303 -8.44749 -7.12840 -6.71211 -4.24622 0.40332 1.11222 1.44353 2.12456 2.43543 2.93164 3.00784 3.02780 3.05361 3.44884 3.77603 3.89022 3.98040 4.40782 4.51081 4.60857 4.69375 4.87215 4.93452 4.98714 5.03456 5.20692 5.41683 5.48743 5.55501 5.58282 5.80905 5.95011 6.00993 6.11496 6.23035 6.37392 6.45963 6.55674 6.73198 6.85195 7.06811 7.14146 7.20792 7.58383 7.73845 7.77282 7.85406 8.72539 9.39150 10.44762 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038488 B = 0.002827 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.332027 B = 9901.270691 C =10505.093416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.272 3.728 3 C -0.116 4.116 4 C 0.087 3.913 5 C -0.220 4.220 6 C -0.040 4.040 7 C -0.195 4.195 8 C 0.171 3.829 9 O -0.156 6.156 10 C -0.392 4.392 11 H 0.099 0.901 12 C 0.042 3.958 13 N -0.847 5.847 14 Si 0.947 3.053 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.267 1.267 18 C -0.243 4.243 19 C -0.024 4.024 20 C 0.206 3.794 21 C -0.174 4.174 22 C -0.067 4.067 23 C -0.192 4.192 24 C 0.111 3.889 25 N -0.486 5.486 26 H 0.149 0.851 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.276 0.724 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 0.434 -17.181 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.042 4.042 3 C -0.121 4.121 4 C 0.064 3.936 5 C -0.222 4.222 6 C -0.059 4.059 7 C -0.215 4.215 8 C 0.114 3.886 9 O -0.056 6.056 10 C -0.467 4.467 11 H 0.116 0.884 12 C -0.165 4.165 13 N -0.479 5.479 14 Si 0.770 3.230 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.192 1.192 18 C -0.262 4.262 19 C -0.043 4.043 20 C 0.070 3.930 21 C -0.194 4.194 22 C -0.093 4.093 23 C -0.212 4.212 24 C -0.047 4.047 25 N -0.196 5.196 26 H 0.166 0.834 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.876 0.455 -16.108 18.900 hybrid contribution 0.369 -0.276 -0.195 0.501 sum 10.246 0.179 -16.303 19.256 Atomic orbital electron populations 1.81270 1.11848 1.10309 1.08015 1.25290 0.92471 0.93457 0.92936 1.16056 0.83831 1.19604 0.92622 1.22691 0.99582 0.81926 0.89423 1.18480 0.99471 1.09812 0.94412 1.20978 0.92475 0.96417 0.96035 1.20007 1.03042 1.05726 0.92705 1.19648 0.90088 0.91658 0.87252 1.83899 1.41564 1.64549 1.15572 1.21492 1.07552 1.31717 0.85979 0.88360 1.25446 0.96080 0.96936 0.98063 1.70014 1.15952 1.37677 1.24263 0.85683 0.79001 0.79467 0.78826 1.19121 1.20016 1.19155 1.20977 0.98574 1.07424 0.99251 1.20829 0.97413 0.94803 0.91229 1.19282 0.89070 0.93404 0.91246 1.22064 1.01259 1.03013 0.93025 1.21481 0.94282 0.95257 0.98242 1.22109 0.95276 1.04076 0.99710 1.22677 1.00167 0.94257 0.87553 1.67609 1.06890 1.14074 1.31013 0.83386 0.86587 0.86140 0.91368 0.84938 0.86400 0.85232 0.84957 0.84981 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.74 17.87 41.84 0.75 -6.99 16 2 C 0.27 4.31 10.24 -22.47 -0.23 4.08 16 3 C -0.12 -1.62 5.82 -104.68 -0.61 -2.23 16 4 C 0.09 1.20 9.40 -36.89 -0.35 0.86 16 5 C -0.22 -3.70 5.59 -105.06 -0.59 -4.29 16 6 C -0.04 -0.75 8.26 -39.28 -0.32 -1.07 16 7 C -0.20 -4.16 9.95 -39.64 -0.39 -4.55 16 8 C 0.17 3.97 6.66 -38.86 -0.26 3.71 16 9 O -0.16 -4.25 9.74 0.79 0.01 -4.24 16 10 C -0.39 -10.32 9.48 30.90 0.29 -10.02 16 11 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 12 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 13 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 14 Si 0.95 19.23 29.55 -169.99 -5.02 14.21 16 15 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 C -0.24 -4.91 9.12 -39.64 -0.36 -5.27 16 19 C -0.02 -0.41 9.77 -39.28 -0.38 -0.79 16 20 C 0.21 2.59 6.72 -82.97 -0.56 2.03 16 21 C -0.17 -1.93 9.47 -39.06 -0.37 -2.30 16 22 C -0.07 -0.58 10.16 -39.32 -0.40 -0.98 16 23 C -0.19 -1.49 10.11 -39.35 -0.40 -1.89 16 24 C 0.11 1.00 11.17 -17.58 -0.20 0.80 16 25 N -0.49 -5.72 9.39 -9.81 -0.09 -5.81 16 26 H 0.15 1.73 7.48 -52.49 -0.39 1.34 16 27 H 0.12 2.07 5.29 -52.49 -0.28 1.79 16 28 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 29 H 0.28 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.13 2.61 5.62 -52.49 -0.29 2.32 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.13 1.43 7.14 -52.49 -0.38 1.06 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -30.08 318.28 -6.89 -36.96 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.86 Total: 4.90 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -5.22 Total: -20.93 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 1.41 Total: -35.69 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.01 Total: -4.24 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.08 -6.89 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007918749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.817 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds