Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36296 * 119.99798 * 278.83338 * 3 2 1 5 5 C 1.46642 * 120.00103 * 352.79706 * 4 3 2 6 6 C 1.40171 * 120.11352 * 330.89675 * 5 4 3 7 7 C 1.37082 * 119.88256 * 179.73886 * 6 5 4 8 8 C 1.39211 * 120.11372 * 0.53826 * 7 6 5 9 9 O 1.35552 * 119.88332 * 179.73792 * 8 7 6 10 10 C 1.34781 * 116.99869 * 185.98040 * 9 8 7 11 11 H 1.07999 * 120.00105 * 354.90940 * 10 9 8 12 12 C 1.38704 * 119.99798 * 174.90765 * 10 9 8 13 13 N 1.31519 * 120.00260 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46950 * 59.99737 * 14 12 10 16 16 H 1.48498 * 109.47326 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46789 * 299.99634 * 14 12 10 18 18 C 1.39212 * 120.22831 * 359.71820 * 8 7 6 19 19 C 1.37079 * 120.11785 * 0.02562 * 18 8 7 20 20 C 1.47982 * 120.00109 * 98.83414 * 3 2 1 21 21 C 1.39543 * 119.74362 * 0.02562 * 20 3 2 22 22 C 1.38319 * 119.05468 * 179.79249 * 21 20 3 23 23 C 1.38853 * 118.52602 * 0.42204 * 22 21 20 24 24 C 1.38241 * 119.40545 * 359.52886 * 23 22 21 25 25 N 1.31768 * 120.90719 * 0.27263 * 24 23 22 26 26 H 1.07997 * 119.99847 * 172.80460 * 4 3 2 27 27 H 1.08002 * 120.05335 * 359.97438 * 6 5 4 28 28 H 1.08001 * 119.94159 * 180.23149 * 7 6 5 29 29 H 0.97003 * 119.99975 * 180.02562 * 13 12 10 30 30 H 1.07999 * 119.94203 * 180.02562 * 18 8 7 31 31 H 1.07994 * 120.06010 * 179.97438 * 19 18 8 32 32 H 1.07995 * 120.47610 * 359.97438 * 21 20 3 33 33 H 1.07998 * 120.73656 * 180.22689 * 22 21 20 34 34 H 1.08007 * 120.29677 * 179.80852 * 23 22 21 35 35 H 1.07996 * 119.54557 * 180.25732 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2496 -0.1803 1.1664 5 6 2.5250 -0.2175 2.4408 6 6 1.3274 0.4954 2.5899 7 6 0.6512 0.4529 3.7816 8 6 1.1578 -0.2875 4.8461 9 8 0.4880 -0.3219 6.0241 10 6 1.0899 -0.9525 7.0520 11 1 2.0236 -1.4719 6.8947 12 6 0.5102 -0.9343 8.3120 13 7 -0.6271 -0.3021 8.5036 14 14 1.3448 -1.8076 9.7368 15 1 2.6931 -1.2241 9.9537 16 1 0.5295 -1.6394 10.9665 17 1 1.4757 -3.2532 9.4230 18 6 2.3495 -0.9929 4.7049 19 6 3.0308 -0.9613 3.5158 20 6 3.3079 0.1978 -1.2663 21 6 2.6047 0.3831 -2.4573 22 6 3.3106 0.5704 -3.6320 23 6 4.6981 0.5578 -3.5810 24 6 5.3310 0.3698 -2.3665 25 7 4.6358 0.1976 -1.2605 26 1 4.3232 -0.2962 1.1520 27 1 0.9362 1.0740 1.7662 28 1 -0.2736 0.9988 3.8964 29 1 -1.0323 -0.2891 9.3848 30 1 2.7381 -1.5662 5.5336 31 1 3.9554 -1.5086 3.4073 32 1 1.5248 0.3833 -2.4614 33 1 2.7940 0.7200 -4.5685 34 1 5.2777 0.6981 -4.4815 35 1 6.4101 0.3637 -2.3236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007918749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = 66.605038 kcal Electronic energy + Delta-G solvation = -20611.495793 eV Core-core repulsion = 17347.277957 eV Total energy + Delta-G solvation = -3264.217835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19862 -40.84428 -39.07459 -37.58728 -35.25098 -34.33836 -33.24675 -32.13883 -32.03776 -29.34790 -27.55992 -25.46762 -24.36493 -23.91521 -23.05277 -22.08087 -20.00621 -19.26861 -18.66854 -17.26605 -16.98953 -16.57414 -16.40320 -16.17128 -15.77182 -15.66207 -15.58919 -15.25798 -14.73311 -14.65248 -14.35945 -14.13659 -13.92030 -13.71740 -13.62726 -13.38968 -13.16635 -12.76000 -12.63737 -12.37903 -12.34629 -12.15902 -11.36899 -11.20345 -10.85219 -10.71753 -10.40521 -10.00249 -9.72931 -8.63106 -8.54628 -6.21611 -0.68442 0.34155 0.45579 0.52063 1.01120 1.35798 1.47386 1.52663 1.63319 2.14289 2.30074 2.75981 2.78783 3.04359 3.13372 3.30837 3.44333 3.77078 3.92265 3.99176 4.09342 4.13470 4.22615 4.29003 4.36919 4.55668 4.72614 4.82798 4.84813 4.91490 5.03894 5.10183 5.18281 5.31421 5.34932 5.47979 5.56720 5.63077 5.82511 5.93066 6.02167 6.48558 6.88521 7.03089 7.64406 8.67146 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038488 B = 0.002827 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.332027 B = 9901.270691 C =10505.093416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.280 3.720 3 C -0.089 4.089 4 C 0.083 3.917 5 C -0.192 4.192 6 C -0.046 4.046 7 C -0.213 4.213 8 C 0.138 3.862 9 O -0.218 6.218 10 C -0.418 4.418 11 H 0.113 0.887 12 C -0.021 4.021 13 N -0.916 5.916 14 Si 1.023 2.977 15 H -0.253 1.253 16 H -0.274 1.274 17 H -0.254 1.254 18 C -0.245 4.245 19 C -0.016 4.016 20 C 0.176 3.824 21 C -0.184 4.184 22 C -0.070 4.070 23 C -0.172 4.172 24 C 0.103 3.897 25 N -0.498 5.498 26 H 0.183 0.817 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.276 0.724 30 H 0.136 0.864 31 H 0.169 0.831 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.100 -0.318 -21.192 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.033 4.033 3 C -0.094 4.094 4 C 0.059 3.941 5 C -0.192 4.192 6 C -0.065 4.065 7 C -0.232 4.232 8 C 0.085 3.915 9 O -0.123 6.123 10 C -0.493 4.493 11 H 0.131 0.869 12 C -0.219 4.219 13 N -0.552 5.552 14 Si 0.841 3.159 15 H -0.177 1.177 16 H -0.199 1.199 17 H -0.178 1.178 18 C -0.264 4.264 19 C -0.034 4.034 20 C 0.040 3.960 21 C -0.204 4.204 22 C -0.095 4.095 23 C -0.191 4.191 24 C -0.055 4.055 25 N -0.207 5.207 26 H 0.200 0.800 27 H 0.141 0.859 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.186 0.814 32 H 0.139 0.861 33 H 0.177 0.823 34 H 0.187 0.813 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 14.388 -0.296 -20.199 24.801 hybrid contribution -0.767 0.070 0.179 0.791 sum 13.621 -0.226 -20.020 24.215 Atomic orbital electron populations 1.81295 1.13140 1.11105 1.09191 1.25740 0.93010 0.92663 0.91899 1.16369 0.82677 1.16344 0.93987 1.22761 1.00813 0.83085 0.87405 1.18887 0.97784 1.06755 0.95819 1.21129 0.93274 0.96981 0.95107 1.20115 1.03280 1.06199 0.93651 1.20127 0.91620 0.92911 0.86793 1.83892 1.43633 1.67786 1.16983 1.21983 1.08413 1.32433 0.86517 0.86941 1.26738 0.96671 0.97696 1.00821 1.70171 1.18619 1.41549 1.24853 0.84589 0.78102 0.78540 0.74667 1.17651 1.19877 1.17835 1.21182 0.97628 1.06751 1.00867 1.21295 0.98526 0.94131 0.89475 1.19101 0.89801 0.96391 0.90673 1.22144 1.01136 1.03380 0.93760 1.21864 0.95030 0.94240 0.98375 1.22578 0.95025 1.00790 1.00731 1.23319 1.01648 0.93322 0.87214 1.67561 1.06254 1.14264 1.32651 0.79982 0.85880 0.87561 0.91531 0.84644 0.81383 0.86075 0.82298 0.81312 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.52 17.87 19.00 0.34 -16.18 16 2 C 0.28 8.52 10.24 88.33 0.90 9.42 16 3 C -0.09 -2.23 5.82 -19.90 -0.12 -2.35 16 4 C 0.08 1.97 9.40 24.01 0.23 2.19 16 5 C -0.19 -5.99 5.59 -20.15 -0.11 -6.10 16 6 C -0.05 -1.73 8.26 22.47 0.19 -1.54 16 7 C -0.21 -9.61 9.95 22.23 0.22 -9.39 16 8 C 0.14 6.81 6.66 22.74 0.15 6.96 16 9 O -0.22 -12.94 9.74 -20.08 -0.20 -13.14 16 10 C -0.42 -23.46 9.48 67.93 0.64 -22.81 16 11 H 0.11 5.60 5.18 -2.91 -0.02 5.58 16 12 C -0.02 -1.13 5.49 84.85 0.47 -0.66 16 13 N -0.92 -55.28 13.67 21.62 0.30 -54.99 16 14 Si 1.02 41.05 29.55 68.60 2.03 43.07 16 15 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 C -0.25 -9.94 9.12 22.23 0.20 -9.73 16 19 C -0.02 -0.51 9.77 22.47 0.22 -0.29 16 20 C 0.18 3.84 6.72 41.90 0.28 4.12 16 21 C -0.18 -3.54 9.47 22.60 0.21 -3.33 16 22 C -0.07 -0.89 10.16 22.44 0.23 -0.67 16 23 C -0.17 -1.69 10.11 22.42 0.23 -1.46 16 24 C 0.10 1.29 11.17 84.70 0.95 2.24 16 25 N -0.50 -9.48 9.39 -184.95 -1.74 -11.22 16 26 H 0.18 3.27 7.48 -2.91 -0.02 3.25 16 27 H 0.12 4.39 5.29 -2.91 -0.02 4.37 16 28 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.14 5.36 5.62 -2.91 -0.02 5.34 16 31 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.12 2.47 7.14 -2.91 -0.02 2.45 16 33 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -73.53 318.28 6.76 -66.77 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.14 Total: 19.09 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 4.89 Total: -33.41 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.10 Total: -82.39 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.20 Total: -13.14 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -73.53 6.76 -66.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007918749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.372 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds