Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39687 * 120.00301 * 184.09405 * 3 2 1 5 5 C 1.37710 * 119.99820 * 180.02562 * 4 3 2 6 6 C 1.39650 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.47856 * 119.99770 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99667 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00225 * 180.02562 * 7 6 5 10 10 C 1.39110 * 119.99851 * 183.04038 * 9 7 6 11 11 C 1.39515 * 119.83585 * 141.95577 * 10 9 7 12 12 C 1.36356 * 120.16753 * 179.76061 * 11 10 9 13 13 C 1.40891 * 119.82776 * 0.51101 * 12 11 10 14 14 C 1.41123 * 120.16279 * 179.72097 * 13 12 11 15 15 H 1.07994 * 120.00063 * 158.00220 * 14 13 12 16 16 C 1.39925 * 119.99552 * 338.00112 * 14 13 12 17 17 N 1.30856 * 120.00071 * 327.54224 * 16 14 13 18 18 Si 1.86799 * 119.99529 * 147.54424 * 16 14 13 19 19 H 1.48508 * 109.47066 * 94.98472 * 18 16 14 20 20 H 1.48500 * 109.47317 * 214.98335 * 18 16 14 21 21 H 1.48494 * 109.47524 * 334.98804 * 18 16 14 22 22 C 1.40889 * 119.67522 * 359.74251 * 13 12 11 23 23 C 1.36346 * 119.83274 * 359.97438 * 22 13 12 24 24 C 1.39657 * 120.01190 * 0.25279 * 6 5 4 25 25 C 1.37721 * 119.99858 * 359.49162 * 24 6 5 26 26 H 1.08007 * 119.99955 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.99468 * 179.97438 * 5 4 3 28 28 H 0.96997 * 119.99833 * 3.31144 * 9 7 6 29 29 H 1.08000 * 119.91836 * 0.02562 * 11 10 9 30 30 H 1.07996 * 120.08813 * 180.23451 * 12 11 10 31 31 H 0.97005 * 119.99825 * 180.02562 * 17 16 14 32 32 H 1.08006 * 120.08255 * 179.97438 * 22 13 12 33 33 H 1.08006 * 119.91762 * 179.97438 * 23 22 13 34 34 H 1.07999 * 120.00655 * 179.72176 * 24 6 5 35 35 H 1.07996 * 119.99946 * 180.25658 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2660 1.2076 0.0864 5 6 4.6431 1.2081 0.0858 6 6 5.3418 0.0021 -0.0016 7 6 6.8204 0.0028 -0.0027 8 8 7.4276 1.0532 0.0719 9 7 7.4947 -1.1610 -0.0876 10 6 8.8844 -1.1657 -0.0250 11 6 9.5452 -2.1900 0.6535 12 6 10.9073 -2.2040 0.7150 13 6 11.6471 -1.1746 0.1001 14 6 13.0569 -1.1788 0.1644 15 1 13.6324 -0.6324 -0.5680 16 6 13.7088 -1.8910 1.1771 17 7 13.1532 -2.0088 2.3560 18 14 15.3724 -2.6735 0.8462 19 1 16.4497 -1.7519 1.2882 20 1 15.4761 -3.9516 1.5952 21 1 15.5141 -2.9391 -0.6080 22 6 10.9725 -0.1406 -0.5787 23 6 9.6103 -0.1432 -0.6367 24 6 4.6442 -1.2042 -0.0938 25 6 3.2670 -1.2055 -0.0880 26 1 2.7256 2.1403 0.1536 27 1 5.1826 2.1413 0.1522 28 1 7.0113 -1.9948 -0.1963 29 1 8.9766 -2.9763 1.1278 30 1 11.4176 -2.9996 1.2374 31 1 13.6053 -2.5022 3.0582 32 1 11.5331 0.6520 -1.0521 33 1 9.0918 0.6490 -1.1565 34 1 5.1847 -2.1365 -0.1660 35 1 2.7276 -2.1387 -0.1551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015028907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = 25.363469 kcal Electronic energy + Delta-G solvation = -20635.145474 eV Core-core repulsion = 17369.139270 eV Total energy + Delta-G solvation = -3266.006204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53242 -40.05240 -38.88521 -37.46112 -36.23689 -34.88928 -32.75404 -32.13893 -31.42977 -30.71819 -27.25315 -25.62139 -23.75393 -23.38999 -22.55093 -21.47079 -20.00090 -19.34422 -18.96576 -17.94962 -17.04323 -16.44136 -16.17797 -15.94767 -15.73130 -15.52982 -15.14318 -14.88082 -14.69621 -14.54587 -14.31565 -13.94909 -13.92487 -13.79851 -13.32952 -13.19797 -13.09841 -12.91338 -12.72757 -12.40180 -12.11526 -11.84121 -11.47680 -11.06762 -10.84030 -10.60861 -10.08448 -10.06100 -9.45603 -9.00448 -8.69138 -6.22635 -0.66405 0.32213 0.85579 1.16491 1.37958 1.42447 1.53654 1.55740 1.61832 2.20440 2.21785 2.29299 2.65616 2.73997 2.90964 3.67469 3.74249 3.83920 3.89150 4.20827 4.37294 4.42154 4.52021 4.62591 4.92202 4.97114 5.06578 5.12191 5.17020 5.19963 5.27833 5.33447 5.45124 5.65687 5.67555 5.90102 6.04187 6.10458 6.37153 6.37380 6.62815 6.72526 6.90454 7.00201 7.37887 8.21151 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050737 B = 0.002628 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.732969 B =10650.741736 C =10939.111528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.280 3.720 3 C -0.011 4.011 4 C -0.066 4.066 5 C -0.072 4.072 6 C -0.107 4.107 7 C 0.534 3.466 8 O -0.571 6.571 9 N -0.631 5.631 10 C -0.011 4.011 11 C -0.096 4.096 12 C -0.191 4.191 13 C 0.083 3.917 14 C -0.503 4.503 15 H 0.076 0.924 16 C 0.050 3.950 17 N -0.799 5.799 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.246 4.246 23 C -0.074 4.074 24 C -0.081 4.081 25 C -0.061 4.061 26 H 0.160 0.840 27 H 0.138 0.862 28 H 0.417 0.583 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.294 0.706 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.959 -2.806 -2.756 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.034 4.034 3 C -0.015 4.015 4 C -0.086 4.086 5 C -0.091 4.091 6 C -0.110 4.110 7 C 0.324 3.676 8 O -0.452 6.452 9 N -0.276 5.276 10 C -0.104 4.104 11 C -0.116 4.116 12 C -0.211 4.211 13 C 0.081 3.919 14 C -0.530 4.530 15 H 0.094 0.906 16 C -0.169 4.169 17 N -0.422 5.422 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.182 1.182 22 C -0.266 4.266 23 C -0.094 4.094 24 C -0.099 4.099 25 C -0.082 4.082 26 H 0.178 0.822 27 H 0.156 0.844 28 H 0.256 0.744 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.180 0.820 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.306 -2.161 -2.438 16.628 hybrid contribution 1.260 -0.246 0.036 1.285 sum -15.046 -2.408 -2.402 15.426 Atomic orbital electron populations 1.81310 1.13286 1.08556 1.09992 1.25738 0.92539 0.92585 0.92573 1.16206 0.83513 0.95722 1.06029 1.21273 0.92941 0.97926 0.96453 1.21234 0.93872 0.97912 0.96123 1.20105 0.90879 0.96220 1.03840 1.18940 0.88348 0.83645 0.76696 1.90770 1.70670 1.32682 1.51044 1.42695 1.04555 1.09777 1.70564 1.17057 0.82162 1.01664 1.09541 1.20460 0.94279 0.98584 0.98290 1.20658 0.93314 1.00161 1.06975 1.17927 0.93916 0.90121 0.89967 1.19732 0.92178 1.29414 1.11698 0.90584 1.26764 1.03746 0.93615 0.92800 1.69953 1.41078 1.29018 1.02166 0.85347 0.76680 0.78600 0.80063 1.18709 1.18492 1.18230 1.20710 0.93988 1.00621 1.11309 1.20421 0.93508 0.97490 0.98002 1.21492 0.94257 0.97379 0.96818 1.21375 0.93347 0.97701 0.95739 0.82250 0.84418 0.74410 0.85527 0.88313 0.89470 0.89056 0.87922 0.82002 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.69 18.54 19.01 0.35 -9.34 16 2 C 0.28 4.44 15.32 88.33 1.35 5.80 16 3 C -0.01 -0.14 5.73 -21.33 -0.12 -0.26 16 4 C -0.07 -0.85 9.73 22.49 0.22 -0.63 16 5 C -0.07 -1.34 9.58 22.49 0.22 -1.12 16 6 C -0.11 -2.21 5.88 -20.05 -0.12 -2.33 16 7 C 0.53 16.78 7.58 86.79 0.66 17.43 16 8 O -0.57 -23.53 13.95 -3.90 -0.05 -23.58 16 9 N -0.63 -19.34 5.24 -305.70 -1.60 -20.94 16 10 C -0.01 -0.46 6.25 38.60 0.24 -0.22 16 11 C -0.10 -4.10 9.90 22.14 0.22 -3.88 16 12 C -0.19 -9.58 8.74 22.48 0.20 -9.39 16 13 C 0.08 4.50 5.57 -21.27 -0.12 4.38 16 14 C -0.50 -26.92 8.94 23.39 0.21 -26.71 16 15 H 0.08 3.99 8.02 -2.91 -0.02 3.96 16 16 C 0.05 2.47 4.77 85.25 0.41 2.87 16 17 N -0.80 -40.34 11.78 21.82 0.26 -40.08 16 18 Si 0.97 36.54 29.66 68.60 2.03 38.57 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 22 C -0.25 -12.72 9.74 22.48 0.22 -12.50 16 23 C -0.07 -3.52 8.59 22.14 0.19 -3.33 16 24 C -0.08 -1.03 9.52 22.49 0.21 -0.82 16 25 C -0.06 -0.60 9.73 22.50 0.22 -0.38 16 26 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 27 H 0.14 2.82 7.64 -2.91 -0.02 2.80 16 28 H 0.42 8.73 6.85 -92.71 -0.63 8.09 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.10 5.04 6.52 -2.91 -0.02 5.02 16 31 H 0.29 13.17 8.30 -92.70 -0.77 12.40 16 32 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.10 4.79 6.45 -2.91 -0.02 4.78 16 34 H 0.16 1.25 6.39 -2.91 -0.02 1.24 16 35 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -69.13 318.45 5.71 -63.42 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.52 Total: 23.03 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 4.20 Total: -31.08 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.99 Total: -70.36 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -69.13 5.71 -63.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015028907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.786 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds