Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 110.53596 * 2 1 4 4 C 1.38240 * 119.97469 * 266.89207 * 3 2 1 5 5 C 1.38197 * 120.02719 * 179.76370 * 4 3 2 6 6 C 1.38459 * 119.97257 * 0.51583 * 5 4 3 7 7 F 1.35106 * 120.02686 * 179.76638 * 6 5 4 8 8 C 1.38460 * 119.94709 * 359.73675 * 6 5 4 9 9 C 1.38197 * 119.97550 * 0.02562 * 8 6 5 10 10 N 1.47312 * 110.73007 * 122.92143 * 2 1 3 11 11 C 1.34524 * 106.62329 * 118.37188 * 10 2 1 12 12 O 1.21540 * 123.77569 * 180.20973 * 11 10 2 13 13 N 1.33794 * 112.45351 * 0.37953 * 11 10 2 14 14 C 1.46506 * 124.17387 * 179.86917 * 13 11 10 15 15 C 1.50698 * 109.47006 * 269.69566 * 14 13 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.34763 * 111.64654 * 359.60031 * 13 11 10 24 24 O 1.21237 * 127.15892 * 180.26527 * 23 13 11 25 25 H 1.09002 * 109.46689 * 182.12991 * 1 2 3 26 26 H 1.08995 * 109.46906 * 302.13012 * 1 2 3 27 27 H 1.09000 * 109.46668 * 62.13296 * 1 2 3 28 28 H 1.08001 * 119.98739 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.01326 * 180.25154 * 5 4 3 30 30 H 1.07998 * 120.01177 * 180.02562 * 8 6 5 31 31 H 1.08000 * 119.98493 * 180.02562 * 9 8 6 32 32 H 0.97005 * 126.68703 * 298.61705 * 10 2 1 33 33 H 1.09001 * 109.47068 * 149.70231 * 14 13 11 34 34 H 1.08993 * 109.47068 * 29.69685 * 14 13 11 35 35 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3617 2.0353 -1.1957 5 6 2.8420 3.3311 -1.1973 6 6 3.0296 4.0007 0.0000 7 9 3.5035 5.2659 0.0000 8 6 2.7307 3.3728 1.1973 9 6 2.2459 2.0786 1.1961 10 7 2.0514 -0.7488 1.1565 11 6 2.7605 -1.7786 0.6602 12 8 3.3279 -2.6030 1.3499 13 7 2.7745 -1.7918 -0.6776 14 6 3.4714 -2.7975 -1.4834 15 6 4.8773 -2.3318 -1.7618 16 1 5.2178 -1.3820 -1.3766 17 6 5.7293 -3.1188 -2.5073 18 7 5.3149 -4.2756 -2.9759 19 14 7.4723 -2.5418 -2.8517 20 1 8.1788 -3.5611 -3.6687 21 1 8.1930 -2.3496 -1.5676 22 1 7.4307 -1.2559 -3.5933 23 6 2.0634 -0.7693 -1.1923 24 8 1.8865 -0.5174 -2.3649 25 1 -0.3633 -1.0270 0.0382 26 1 -0.3633 0.5465 0.8702 27 1 -0.3633 0.4804 -0.9085 28 1 2.2192 1.5113 -2.1293 29 1 3.0748 3.8198 -2.1318 30 1 2.8762 3.8942 2.1318 31 1 2.0122 1.5889 2.1299 32 1 1.9081 -0.5418 2.0933 33 1 2.9421 -2.9385 -2.4258 34 1 3.5023 -3.7414 -0.9393 35 1 4.4100 -4.5753 -2.7967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015505538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = -62.712488 kcal Electronic energy + Delta-G solvation = -23438.667862 eV Core-core repulsion = 19738.073174 eV Total energy + Delta-G solvation = -3700.594689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.04471 -42.23505 -39.18408 -38.05676 -36.01223 -34.96018 -32.91043 -31.49044 -31.15937 -29.25968 -27.57804 -24.78782 -23.57039 -23.08723 -22.76626 -21.06572 -19.99809 -18.12290 -17.58721 -17.18437 -16.83964 -16.38726 -15.86784 -15.69946 -15.18822 -15.07615 -14.72767 -14.32851 -13.95124 -13.78998 -13.66151 -13.41233 -13.23359 -12.91118 -12.59195 -12.55680 -12.32413 -11.84408 -11.74810 -11.34175 -11.21101 -10.71018 -10.26396 -10.11387 -9.72533 -9.70802 -9.40598 -9.27256 -8.78582 -8.49779 -8.43678 -6.52264 -4.25299 0.86604 1.05964 2.00450 2.72960 3.23359 3.40798 3.43070 3.53345 3.58753 3.61729 4.03326 4.14060 4.26333 4.46763 4.61561 4.66826 4.79340 5.10345 5.20486 5.24337 5.35175 5.38758 5.65293 5.68789 5.78786 5.85440 5.93361 6.07503 6.24284 6.35672 6.67786 6.72072 6.80963 6.99226 7.71424 7.76804 7.85505 8.24644 8.58253 8.68563 9.43190 10.86716 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.005698 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.949453 B = 4912.516837 C = 5869.290204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.161 3.839 3 C -0.098 4.098 4 C -0.075 4.075 5 C -0.148 4.148 6 C 0.102 3.898 7 F -0.140 7.140 8 C -0.155 4.155 9 C -0.069 4.069 10 N -0.730 5.730 11 C 0.703 3.297 12 O -0.536 6.536 13 N -0.550 5.550 14 C 0.239 3.761 15 C -0.614 4.614 16 H 0.054 0.946 17 C 0.027 3.973 18 N -0.902 5.902 19 Si 1.073 2.927 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.532 3.468 24 O -0.467 6.467 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.432 0.568 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 14.588 7.853 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.070 3.930 3 C -0.099 4.099 4 C -0.093 4.093 5 C -0.167 4.167 6 C 0.082 3.918 7 F -0.119 7.119 8 C -0.174 4.174 9 C -0.088 4.088 10 N -0.396 5.396 11 C 0.404 3.596 12 O -0.409 6.409 13 N -0.292 5.292 14 C 0.121 3.879 15 C -0.652 4.652 16 H 0.073 0.927 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.900 3.100 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.318 3.682 24 O -0.338 6.338 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.171 0.829 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.275 0.725 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.921 13.754 6.727 17.720 hybrid contribution -1.312 0.835 1.303 2.029 sum -10.234 14.588 8.030 19.546 Atomic orbital electron populations 1.21974 0.89709 1.03824 1.04290 1.20137 0.96673 0.89810 0.86417 1.19501 1.02263 0.93919 0.94239 1.21396 0.94776 0.93808 0.99301 1.21172 1.02500 0.95592 0.97398 1.17794 0.99154 0.80002 0.94802 1.91501 1.85912 1.37029 1.97445 1.21049 1.03120 0.96010 0.97221 1.20653 0.97326 0.93318 0.97475 1.45655 1.56477 1.29264 1.08156 1.15928 0.79199 0.81993 0.82487 1.90973 1.47531 1.41134 1.61215 1.46584 1.46849 1.28564 1.07250 1.19674 0.92758 0.85832 0.89653 1.22075 0.96805 1.08007 1.38342 0.92741 1.25835 1.05212 0.93826 0.92974 1.70819 1.20136 1.19636 1.43065 0.83487 0.74218 0.75684 0.76631 1.20381 1.21206 1.21205 1.20339 0.77879 0.80859 0.89172 1.90694 1.57869 1.68731 1.16527 0.90909 0.90453 0.89742 0.82858 0.84240 0.84473 0.85057 0.72467 0.93905 0.93698 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.97 37.16 0.33 -1.06 16 2 C 0.16 2.20 1.16 -133.24 -0.15 2.04 16 3 C -0.10 -1.25 4.89 -104.62 -0.51 -1.76 16 4 C -0.07 -1.02 9.17 -39.60 -0.36 -1.38 16 5 C -0.15 -1.81 10.03 -39.51 -0.40 -2.21 16 6 C 0.10 1.21 7.30 -39.42 -0.29 0.92 16 7 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 8 C -0.16 -1.61 10.03 -39.51 -0.40 -2.01 16 9 C -0.07 -0.73 9.35 -39.59 -0.37 -1.10 16 10 N -0.73 -10.22 5.37 -54.02 -0.29 -10.51 16 11 C 0.70 14.15 8.62 -88.02 -0.76 13.39 16 12 O -0.54 -12.71 17.48 5.33 0.09 -12.61 16 13 N -0.55 -12.01 2.59 -122.02 -0.32 -12.33 16 14 C 0.24 6.21 4.77 -5.19 -0.02 6.18 16 15 C -0.61 -17.64 9.39 -34.44 -0.32 -17.96 16 16 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 17 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 18 N -0.90 -27.08 13.65 55.43 0.76 -26.32 16 19 Si 1.07 25.55 29.90 -169.99 -5.08 20.46 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.53 10.08 6.45 -10.56 -0.07 10.01 16 24 O -0.47 -9.64 15.61 5.59 0.09 -9.56 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.15 2.31 5.60 -52.49 -0.29 2.02 16 29 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.02 7.11 -52.49 -0.37 0.65 16 32 H 0.43 4.45 8.19 -40.82 -0.33 4.12 16 33 H 0.04 1.14 7.87 -51.93 -0.41 0.73 16 34 H 0.05 1.23 7.72 -51.93 -0.40 0.83 16 35 H 0.27 7.94 7.22 -40.82 -0.29 7.65 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -33.93 310.84 -6.87 -40.80 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.43 Total: 1.31 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.42 Total: 5.73 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.15 Total: -49.16 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.18 Total: -22.17 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.93 -6.87 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015505538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds