Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 110.53596 * 2 1 4 4 C 1.38240 * 119.97469 * 266.89207 * 3 2 1 5 5 C 1.38197 * 120.02719 * 179.76370 * 4 3 2 6 6 C 1.38459 * 119.97257 * 0.51583 * 5 4 3 7 7 F 1.35106 * 120.02686 * 179.76638 * 6 5 4 8 8 C 1.38460 * 119.94709 * 359.73675 * 6 5 4 9 9 C 1.38197 * 119.97550 * 0.02562 * 8 6 5 10 10 N 1.47312 * 110.73007 * 122.92143 * 2 1 3 11 11 C 1.34524 * 106.62329 * 118.37188 * 10 2 1 12 12 O 1.21540 * 123.77569 * 180.20973 * 11 10 2 13 13 N 1.33794 * 112.45351 * 0.37953 * 11 10 2 14 14 C 1.46506 * 124.17387 * 179.86917 * 13 11 10 15 15 C 1.50698 * 109.47006 * 269.69566 * 14 13 11 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.34763 * 111.64654 * 359.60031 * 13 11 10 24 24 O 1.21237 * 127.15892 * 180.26527 * 23 13 11 25 25 H 1.09002 * 109.46689 * 182.12991 * 1 2 3 26 26 H 1.08995 * 109.46906 * 302.13012 * 1 2 3 27 27 H 1.09000 * 109.46668 * 62.13296 * 1 2 3 28 28 H 1.08001 * 119.98739 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.01326 * 180.25154 * 5 4 3 30 30 H 1.07998 * 120.01177 * 180.02562 * 8 6 5 31 31 H 1.08000 * 119.98493 * 180.02562 * 9 8 6 32 32 H 0.97005 * 126.68703 * 298.61705 * 10 2 1 33 33 H 1.09001 * 109.47068 * 149.70231 * 14 13 11 34 34 H 1.08993 * 109.47068 * 29.69685 * 14 13 11 35 35 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3617 2.0353 -1.1957 5 6 2.8420 3.3311 -1.1973 6 6 3.0296 4.0007 0.0000 7 9 3.5035 5.2659 0.0000 8 6 2.7307 3.3728 1.1973 9 6 2.2459 2.0786 1.1961 10 7 2.0514 -0.7488 1.1565 11 6 2.7605 -1.7786 0.6602 12 8 3.3279 -2.6030 1.3499 13 7 2.7745 -1.7918 -0.6776 14 6 3.4714 -2.7975 -1.4834 15 6 4.8773 -2.3318 -1.7618 16 1 5.2178 -1.3820 -1.3766 17 6 5.7293 -3.1188 -2.5073 18 7 5.3149 -4.2756 -2.9759 19 14 7.4723 -2.5418 -2.8517 20 1 8.1788 -3.5611 -3.6687 21 1 8.1930 -2.3496 -1.5676 22 1 7.4307 -1.2559 -3.5933 23 6 2.0634 -0.7693 -1.1923 24 8 1.8865 -0.5174 -2.3649 25 1 -0.3633 -1.0270 0.0382 26 1 -0.3633 0.5465 0.8702 27 1 -0.3633 0.4804 -0.9085 28 1 2.2192 1.5113 -2.1293 29 1 3.0748 3.8198 -2.1318 30 1 2.8762 3.8942 2.1318 31 1 2.0122 1.5889 2.1299 32 1 1.9081 -0.5418 2.0933 33 1 2.9421 -2.9385 -2.4258 34 1 3.5023 -3.7414 -0.9393 35 1 4.4100 -4.5753 -2.7967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015505538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -85.657902 kcal Electronic energy + Delta-G solvation = -23439.662850 eV Core-core repulsion = 19738.073174 eV Total energy + Delta-G solvation = -3701.589677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.96430 -43.69664 -40.30407 -39.56708 -37.45879 -36.74403 -34.88871 -32.60704 -32.16685 -30.18439 -29.54240 -26.21651 -25.30173 -24.24608 -24.03843 -22.36516 -21.45564 -19.47665 -19.23354 -18.60655 -18.20483 -17.52738 -17.29392 -16.69232 -16.65108 -16.37019 -16.33005 -15.69225 -15.52492 -15.19697 -14.90689 -14.64766 -14.39057 -14.19842 -13.91129 -13.82503 -13.48603 -13.43485 -13.29339 -12.76554 -12.59151 -12.21078 -11.98359 -11.86148 -11.66334 -11.18691 -10.75419 -10.70527 -10.40608 -10.16867 -9.74590 -8.83917 -6.58649 -0.08546 0.16852 0.50813 1.23117 1.47304 1.55124 1.75804 1.96088 2.05211 2.47272 2.51670 2.76002 3.00244 3.12668 3.24091 3.70945 3.73641 3.91079 4.10538 4.22365 4.31848 4.44033 4.56986 4.61824 4.67671 4.81691 4.83408 4.90453 5.04727 5.06300 5.14248 5.31033 5.56125 5.74852 5.78441 5.91597 6.15151 6.28845 6.38079 7.07168 7.20205 8.55268 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.005698 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.949453 B = 4912.516837 C = 5869.290204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 C -0.110 4.110 4 C -0.095 4.095 5 C -0.154 4.154 6 C 0.093 3.907 7 F -0.143 7.143 8 C -0.145 4.145 9 C -0.060 4.060 10 N -0.694 5.694 11 C 0.699 3.301 12 O -0.579 6.579 13 N -0.568 5.568 14 C 0.250 3.750 15 C -0.628 4.628 16 H 0.045 0.955 17 C -0.021 4.021 18 N -0.920 5.920 19 Si 1.117 2.883 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.520 3.480 24 O -0.492 6.492 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.454 0.546 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 16.931 9.911 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.089 3.911 3 C -0.111 4.111 4 C -0.113 4.113 5 C -0.173 4.173 6 C 0.074 3.926 7 F -0.121 7.121 8 C -0.163 4.163 9 C -0.078 4.078 10 N -0.361 5.361 11 C 0.400 3.600 12 O -0.456 6.456 13 N -0.311 5.311 14 C 0.130 3.870 15 C -0.666 4.666 16 H 0.063 0.937 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.937 3.063 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.194 1.194 23 C 0.308 3.692 24 O -0.364 6.364 25 H 0.091 0.909 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.185 0.815 32 H 0.302 0.698 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.425 16.161 8.823 20.685 hybrid contribution -1.239 0.170 0.640 1.405 sum -10.665 16.331 9.463 21.679 Atomic orbital electron populations 1.22083 0.86155 1.04683 1.06511 1.20173 0.98844 0.89191 0.82870 1.19475 1.03433 0.93138 0.95061 1.21258 0.96516 0.94566 0.98966 1.21245 1.02456 0.95222 0.98384 1.17972 0.99325 0.80002 0.95272 1.91499 1.85974 1.37188 1.97474 1.21407 1.01305 0.95824 0.97775 1.20977 0.95948 0.93239 0.97628 1.45412 1.54348 1.26948 1.09417 1.16042 0.79500 0.82808 0.81646 1.90938 1.49688 1.43128 1.61824 1.46555 1.47516 1.28885 1.08163 1.19145 0.92154 0.86364 0.89370 1.22334 0.98221 1.07667 1.38392 0.93711 1.27349 1.09006 0.93345 0.92344 1.70925 1.19797 1.20629 1.44222 0.82954 0.69905 0.76081 0.77404 1.19714 1.19700 1.19413 1.21317 0.77029 0.80381 0.90508 1.90672 1.58453 1.69082 1.18194 0.90936 0.86274 0.89337 0.85174 0.83524 0.81382 0.81519 0.69754 0.95412 0.95805 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.97 71.98 0.65 -1.65 16 2 C 0.18 4.55 1.16 2.24 0.00 4.55 16 3 C -0.11 -2.54 4.89 -19.86 -0.10 -2.64 16 4 C -0.09 -2.51 9.17 22.26 0.20 -2.31 16 5 C -0.15 -3.61 10.03 22.31 0.22 -3.38 16 6 C 0.09 1.98 7.30 22.38 0.16 2.14 16 7 F -0.14 -3.14 17.27 44.97 0.78 -2.36 16 8 C -0.14 -2.39 10.03 22.31 0.22 -2.17 16 9 C -0.06 -0.99 9.35 22.26 0.21 -0.78 16 10 N -0.69 -17.74 5.37 -443.25 -2.38 -20.12 16 11 C 0.70 28.04 8.62 179.44 1.55 29.58 16 12 O -0.58 -27.83 17.48 -3.84 -0.07 -27.90 16 13 N -0.57 -25.46 2.59 -777.21 -2.01 -27.47 16 14 C 0.25 13.64 4.77 85.63 0.41 14.05 16 15 C -0.63 -37.19 9.39 25.60 0.24 -36.95 16 16 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 17 C -0.02 -1.22 5.46 84.65 0.46 -0.75 16 18 N -0.92 -56.74 13.65 21.45 0.29 -56.45 16 19 Si 1.12 51.40 29.90 68.60 2.05 53.46 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 C 0.52 19.90 6.45 87.94 0.57 20.47 16 24 O -0.49 -21.03 15.61 -2.90 -0.05 -21.07 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.13 4.06 5.60 -2.91 -0.02 4.04 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.17 1.55 7.11 -2.91 -0.02 1.53 16 32 H 0.45 7.51 8.19 -92.70 -0.76 6.75 16 33 H 0.03 1.58 7.87 -2.39 -0.02 1.56 16 34 H 0.02 1.39 7.72 -2.39 -0.02 1.37 16 35 H 0.26 15.99 7.22 -92.71 -0.67 15.32 16 Total: -1.00 -77.38 310.84 3.91 -73.48 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.49 Total: 8.29 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 4.80 Total: 20.15 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.10 Total: -104.04 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.97 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.46 kcal Total: -77.38 3.91 -73.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015505538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.181 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds