Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 110.53496 * 2 1 4 4 C 1.38248 * 119.97379 * 268.62976 * 3 2 1 5 5 C 1.38196 * 120.02253 * 180.02562 * 4 3 2 6 6 C 1.38465 * 119.97663 * 359.97438 * 5 4 3 7 7 F 1.35093 * 120.02533 * 179.72758 * 6 5 4 8 8 C 1.38463 * 119.94794 * 359.97438 * 6 5 4 9 9 C 1.38198 * 119.97154 * 0.02562 * 8 6 5 10 10 N 1.47315 * 110.59603 * 237.17079 * 2 1 3 11 11 C 1.34522 * 106.62249 * 241.31860 * 10 2 1 12 12 O 1.21537 * 123.77362 * 180.02562 * 11 10 2 13 13 N 1.33792 * 112.45554 * 0.02562 * 11 10 2 14 14 C 1.46500 * 124.17707 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47172 * 89.97869 * 14 13 11 16 16 H 1.08005 * 119.99883 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00401 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99282 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47212 * 90.00091 * 19 17 15 21 21 H 1.48500 * 109.47168 * 210.00176 * 19 17 15 22 22 H 1.48507 * 109.47042 * 329.99976 * 19 17 15 23 23 C 1.34767 * 111.64595 * 0.02562 * 13 11 10 24 24 O 1.21234 * 127.15802 * 180.02562 * 23 13 11 25 25 H 1.08995 * 109.47084 * 60.00127 * 1 2 3 26 26 H 1.09000 * 109.46715 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46896 * 299.99448 * 1 2 3 28 28 H 1.07992 * 119.98805 * 359.97438 * 4 3 2 29 29 H 1.08007 * 120.01270 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.00989 * 179.97438 * 8 6 5 31 31 H 1.08000 * 119.98666 * 180.02562 * 9 8 6 32 32 H 0.97005 * 126.68824 * 61.28394 * 10 2 1 33 33 H 1.09003 * 109.46891 * 209.97343 * 14 13 11 34 34 H 1.08996 * 109.46942 * 329.97691 * 14 13 11 35 35 H 0.97007 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3278 2.0480 -1.1972 5 6 2.8131 3.3419 -1.1984 6 6 3.0293 4.0008 0.0001 7 9 3.5088 5.2638 0.0002 8 6 2.7584 3.3624 1.1985 9 6 2.2731 2.0684 1.1972 10 7 2.0483 -0.7476 -1.1588 11 6 2.7628 -1.7751 -0.6655 12 8 3.3327 -2.5956 -1.3577 13 7 2.7759 -1.7929 0.6722 14 6 3.4760 -2.7986 1.4751 15 6 4.8825 -2.3323 1.7493 16 1 5.2212 -1.3820 1.3637 17 6 5.7371 -3.1188 2.4925 18 7 5.3248 -4.2762 2.9615 19 14 7.4808 -2.5411 2.8318 20 1 7.5058 -1.7566 4.0923 21 1 8.3756 -3.7188 2.9637 22 1 7.9471 -1.6885 1.7088 23 6 2.0654 -0.7714 1.1899 24 8 1.8921 -0.5206 2.3633 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.1595 1.5338 -2.1318 29 1 3.0229 3.8394 -2.1338 30 1 2.9270 3.8752 2.1339 31 1 2.0614 1.5704 2.1318 32 1 1.9023 -0.5397 -2.0950 33 1 2.9498 -2.9406 2.4191 34 1 3.5057 -3.7421 0.9302 35 1 5.9259 -4.8294 3.4847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015505540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -59.753512 kcal Electronic energy + Delta-G solvation = -23398.729919 eV Core-core repulsion = 19698.263541 eV Total energy + Delta-G solvation = -3700.466378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.02006 -42.13958 -39.12806 -37.96307 -35.92263 -34.77592 -32.69218 -31.47328 -31.09614 -29.20773 -27.91531 -24.82759 -23.61756 -23.05865 -22.68917 -20.93886 -19.80452 -18.06514 -17.40461 -17.04421 -16.61898 -16.32587 -15.74632 -15.59234 -15.16819 -14.99877 -14.86018 -14.24570 -14.06571 -13.86302 -13.59621 -13.37720 -13.15534 -12.86138 -12.53245 -12.33968 -12.27746 -11.76565 -11.57305 -11.29049 -11.08575 -10.78243 -10.45596 -10.08469 -9.94395 -9.61238 -9.34083 -9.23358 -8.73753 -8.64317 -8.54055 -6.17026 -4.22227 0.90423 1.09459 2.09903 2.82886 3.27748 3.28909 3.33331 3.38412 3.60782 3.68496 4.08070 4.20976 4.31579 4.39141 4.65374 4.70992 4.84608 5.14458 5.19382 5.24245 5.41122 5.44410 5.71975 5.72592 5.84835 5.90579 5.97935 6.10938 6.28968 6.51308 6.71279 6.97327 7.06880 7.16806 7.75698 7.86420 7.97093 7.99448 8.66024 8.81674 9.42873 10.92390 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.005674 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.567113 B = 4934.036902 C = 5875.851433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.160 3.840 3 C -0.097 4.097 4 C -0.070 4.070 5 C -0.155 4.155 6 C 0.100 3.900 7 F -0.141 7.141 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.732 5.732 11 C 0.702 3.298 12 O -0.536 6.536 13 N -0.553 5.553 14 C 0.248 3.752 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.532 3.468 24 O -0.468 6.468 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.431 0.569 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 14.035 -7.466 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.068 3.932 3 C -0.098 4.098 4 C -0.088 4.088 5 C -0.174 4.174 6 C 0.081 3.919 7 F -0.120 7.120 8 C -0.167 4.167 9 C -0.092 4.092 10 N -0.397 5.397 11 C 0.403 3.597 12 O -0.409 6.409 13 N -0.296 5.296 14 C 0.131 3.869 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.317 3.683 24 O -0.339 6.339 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.171 0.829 32 H 0.274 0.726 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.138 13.459 -6.996 18.245 hybrid contribution 1.131 0.608 -0.251 1.308 sum -9.007 14.067 -7.246 18.208 Atomic orbital electron populations 1.21964 0.89787 1.03853 1.04133 1.20149 0.96649 0.89774 0.86600 1.19535 1.02148 0.93982 0.94164 1.20671 0.97054 0.93458 0.97615 1.21053 1.03365 0.95792 0.97203 1.17794 0.99224 0.80049 0.94811 1.91494 1.85718 1.37284 1.97454 1.21165 1.02355 0.95914 0.97306 1.21336 0.95183 0.93453 0.99180 1.45677 1.56379 1.29591 1.08099 1.15958 0.79188 0.81889 0.82623 1.90970 1.47502 1.41307 1.61087 1.46813 1.46804 1.28744 1.07240 1.19645 0.91747 0.85381 0.90117 1.21234 0.96205 1.05552 1.34341 0.92205 1.24883 0.99056 0.94622 0.95090 1.69917 1.36597 1.11013 1.35294 0.86406 0.83449 0.78355 0.78766 1.20355 1.20836 1.19749 1.20311 0.77974 0.80919 0.89071 1.90694 1.57945 1.68830 1.16395 0.90558 0.90883 0.89827 0.85047 0.84530 0.84299 0.82888 0.72569 0.92853 0.92683 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.97 37.16 0.33 -1.06 16 2 C 0.16 2.17 1.16 -133.24 -0.15 2.02 16 3 C -0.10 -1.24 4.87 -104.62 -0.51 -1.75 16 4 C -0.07 -0.74 9.35 -39.59 -0.37 -1.11 16 5 C -0.16 -1.64 10.03 -39.51 -0.40 -2.03 16 6 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 7 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 8 C -0.15 -1.80 10.03 -39.51 -0.40 -2.20 16 9 C -0.07 -0.98 9.18 -39.59 -0.36 -1.34 16 10 N -0.73 -10.20 5.29 -54.02 -0.29 -10.48 16 11 C 0.70 14.05 8.62 -88.02 -0.76 13.29 16 12 O -0.54 -12.64 17.48 5.33 0.09 -12.54 16 13 N -0.55 -12.02 2.59 -122.03 -0.32 -12.34 16 14 C 0.25 6.49 5.45 -5.20 -0.03 6.46 16 15 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 16 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 17 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 18 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.53 10.02 6.53 -10.56 -0.07 9.95 16 24 O -0.47 -9.60 15.68 5.60 0.09 -9.52 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.13 1.06 6.94 -52.49 -0.36 0.70 16 29 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.15 2.22 5.79 -52.49 -0.30 1.91 16 32 H 0.43 4.43 8.10 -40.82 -0.33 4.10 16 33 H 0.05 1.45 8.00 -51.93 -0.42 1.03 16 34 H 0.06 1.53 7.86 -51.93 -0.41 1.12 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -33.01 312.15 -6.87 -39.87 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.48 Total: 1.03 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -3.42 Total: 9.39 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.13 Total: -48.11 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.01 -6.87 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015505540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.881 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds