Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 110.53496 * 2 1 4 4 C 1.38248 * 119.97379 * 268.62976 * 3 2 1 5 5 C 1.38196 * 120.02253 * 180.02562 * 4 3 2 6 6 C 1.38465 * 119.97663 * 359.97438 * 5 4 3 7 7 F 1.35093 * 120.02533 * 179.72758 * 6 5 4 8 8 C 1.38463 * 119.94794 * 359.97438 * 6 5 4 9 9 C 1.38198 * 119.97154 * 0.02562 * 8 6 5 10 10 N 1.47315 * 110.59603 * 237.17079 * 2 1 3 11 11 C 1.34522 * 106.62249 * 241.31860 * 10 2 1 12 12 O 1.21537 * 123.77362 * 180.02562 * 11 10 2 13 13 N 1.33792 * 112.45554 * 0.02562 * 11 10 2 14 14 C 1.46500 * 124.17707 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47172 * 89.97869 * 14 13 11 16 16 H 1.08005 * 119.99883 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00401 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99282 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47212 * 90.00091 * 19 17 15 21 21 H 1.48500 * 109.47168 * 210.00176 * 19 17 15 22 22 H 1.48507 * 109.47042 * 329.99976 * 19 17 15 23 23 C 1.34767 * 111.64595 * 0.02562 * 13 11 10 24 24 O 1.21234 * 127.15802 * 180.02562 * 23 13 11 25 25 H 1.08995 * 109.47084 * 60.00127 * 1 2 3 26 26 H 1.09000 * 109.46715 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46896 * 299.99448 * 1 2 3 28 28 H 1.07992 * 119.98805 * 359.97438 * 4 3 2 29 29 H 1.08007 * 120.01270 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.00989 * 179.97438 * 8 6 5 31 31 H 1.08000 * 119.98666 * 180.02562 * 9 8 6 32 32 H 0.97005 * 126.68824 * 61.28394 * 10 2 1 33 33 H 1.09003 * 109.46891 * 209.97343 * 14 13 11 34 34 H 1.08996 * 109.46942 * 329.97691 * 14 13 11 35 35 H 0.97007 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3278 2.0480 -1.1972 5 6 2.8131 3.3419 -1.1984 6 6 3.0293 4.0008 0.0001 7 9 3.5088 5.2638 0.0002 8 6 2.7584 3.3624 1.1985 9 6 2.2731 2.0684 1.1972 10 7 2.0483 -0.7476 -1.1588 11 6 2.7628 -1.7751 -0.6655 12 8 3.3327 -2.5956 -1.3577 13 7 2.7759 -1.7929 0.6722 14 6 3.4760 -2.7986 1.4751 15 6 4.8825 -2.3323 1.7493 16 1 5.2212 -1.3820 1.3637 17 6 5.7371 -3.1188 2.4925 18 7 5.3248 -4.2762 2.9615 19 14 7.4808 -2.5411 2.8318 20 1 7.5058 -1.7566 4.0923 21 1 8.3756 -3.7188 2.9637 22 1 7.9471 -1.6885 1.7088 23 6 2.0654 -0.7714 1.1899 24 8 1.8921 -0.5206 2.3633 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.1595 1.5338 -2.1318 29 1 3.0229 3.8394 -2.1338 30 1 2.9270 3.8752 2.1339 31 1 2.0614 1.5704 2.1318 32 1 1.9023 -0.5397 -2.0950 33 1 2.9498 -2.9406 2.4191 34 1 3.5057 -3.7421 0.9302 35 1 5.9259 -4.8294 3.4847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015505540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -81.750696 kcal Electronic energy + Delta-G solvation = -23399.683789 eV Core-core repulsion = 19698.263541 eV Total energy + Delta-G solvation = -3701.420247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.94464 -43.59341 -40.23412 -39.47894 -37.36381 -36.50063 -34.70072 -32.57970 -32.11722 -30.14693 -29.88031 -26.28518 -25.23892 -24.17361 -23.96815 -22.21439 -21.28329 -19.23123 -19.02239 -18.56127 -18.04210 -17.40721 -17.26548 -16.88954 -16.62588 -16.35129 -16.26217 -15.84661 -15.39573 -15.10611 -14.81700 -14.49470 -14.34075 -14.15714 -13.74521 -13.70302 -13.42406 -13.30298 -13.15590 -12.73791 -12.68960 -12.43178 -12.12755 -11.99229 -11.73749 -11.10006 -10.73782 -10.71808 -10.44963 -10.13419 -9.70277 -8.34876 -6.49249 -0.04838 0.20410 0.60771 1.31863 1.36601 1.37163 1.48677 2.05223 2.13849 2.33971 2.55900 2.85906 2.98460 3.17296 3.28388 3.75398 3.78593 3.94598 4.22404 4.27165 4.35943 4.62743 4.65280 4.70640 4.86651 4.90525 4.96890 5.03743 5.08809 5.11391 5.18185 5.35833 5.54897 5.80327 5.82182 5.84959 6.27114 6.42713 6.56845 7.13645 7.25068 8.74977 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.005674 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.567113 B = 4934.036902 C = 5875.851433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.179 3.821 3 C -0.109 4.109 4 C -0.062 4.062 5 C -0.146 4.146 6 C 0.092 3.908 7 F -0.144 7.144 8 C -0.154 4.154 9 C -0.091 4.091 10 N -0.697 5.697 11 C 0.699 3.301 12 O -0.579 6.579 13 N -0.571 5.571 14 C 0.263 3.737 15 C -0.556 4.556 16 H 0.051 0.949 17 C 0.017 3.983 18 N -0.919 5.919 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.520 3.480 24 O -0.492 6.492 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.453 0.547 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 16.195 -9.237 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.088 3.912 3 C -0.110 4.110 4 C -0.080 4.080 5 C -0.165 4.165 6 C 0.072 3.928 7 F -0.122 7.122 8 C -0.173 4.173 9 C -0.109 4.109 10 N -0.364 5.364 11 C 0.400 3.600 12 O -0.456 6.456 13 N -0.314 5.314 14 C 0.144 3.856 15 C -0.594 4.594 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.195 1.195 23 C 0.308 3.692 24 O -0.364 6.364 25 H 0.135 0.865 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.182 0.818 29 H 0.184 0.816 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.301 0.699 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.409 15.680 -8.799 20.776 hybrid contribution 1.150 -0.016 0.335 1.198 sum -9.259 15.665 -8.463 20.068 Atomic orbital electron populations 1.22069 0.86304 1.04566 1.06452 1.20166 0.98789 0.89169 0.83090 1.19505 1.03362 0.93160 0.95001 1.20970 0.95734 0.93492 0.97794 1.21392 1.01756 0.95561 0.97778 1.17978 0.99397 0.80074 0.95310 1.91491 1.85782 1.37472 1.97486 1.21256 1.02218 0.95572 0.98253 1.21226 0.96629 0.94170 0.98879 1.45428 1.54273 1.27320 1.09358 1.16051 0.79473 0.82685 0.81770 1.90935 1.49635 1.43294 1.61697 1.46742 1.47467 1.29064 1.08159 1.19040 0.91355 0.85758 0.89447 1.21465 0.97505 1.05461 1.34934 0.93051 1.25796 1.03341 0.94643 0.94592 1.70016 1.38228 1.11951 1.35593 0.85387 0.78227 0.78289 0.78820 1.19285 1.19593 1.19486 1.21255 0.77122 0.80450 0.90378 1.90670 1.58515 1.69194 1.18034 0.86505 0.91016 0.89267 0.81804 0.81609 0.83427 0.84815 0.69876 0.94932 0.95364 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.97 71.98 0.65 -1.67 16 2 C 0.18 4.53 1.16 2.24 0.00 4.53 16 3 C -0.11 -2.53 4.87 -19.86 -0.10 -2.62 16 4 C -0.06 -1.07 9.35 22.26 0.21 -0.86 16 5 C -0.15 -2.51 10.03 22.31 0.22 -2.29 16 6 C 0.09 1.96 7.30 22.38 0.16 2.12 16 7 F -0.14 -3.20 17.27 44.97 0.78 -2.42 16 8 C -0.15 -3.56 10.03 22.31 0.22 -3.33 16 9 C -0.09 -2.35 9.18 22.26 0.20 -2.15 16 10 N -0.70 -17.85 5.29 -443.25 -2.34 -20.20 16 11 C 0.70 28.01 8.62 179.44 1.55 29.55 16 12 O -0.58 -27.78 17.48 -3.83 -0.07 -27.85 16 13 N -0.57 -25.58 2.59 -777.23 -2.01 -27.59 16 14 C 0.26 14.51 5.45 85.63 0.47 14.98 16 15 C -0.56 -32.66 9.39 25.60 0.24 -32.42 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 17 C 0.02 0.98 5.46 84.66 0.46 1.44 16 18 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 19 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 C 0.52 19.87 6.53 87.94 0.57 20.45 16 24 O -0.49 -20.93 15.68 -2.89 -0.05 -20.98 16 25 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.16 1.71 6.94 -2.91 -0.02 1.69 16 29 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.13 3.98 5.79 -2.91 -0.02 3.96 16 32 H 0.45 7.57 8.10 -92.70 -0.75 6.82 16 33 H 0.03 1.89 8.00 -2.39 -0.02 1.87 16 34 H 0.03 1.68 7.86 -2.39 -0.02 1.66 16 35 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -75.03 312.15 3.88 -71.14 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.40 Total: 7.78 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 4.87 Total: 27.72 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.07 Total: -102.55 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.11 Total: -48.83 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.03 3.88 -71.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015505540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.608 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds