Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 120.00014 * 2 1 4 4 C 1.46813 * 120.00128 * 180.02562 * 2 1 3 5 5 C 1.40080 * 120.10168 * 174.26587 * 4 2 1 6 6 C 1.36587 * 119.90167 * 180.27686 * 5 4 2 7 7 C 1.39248 * 120.09694 * 359.50160 * 6 5 4 8 8 N 1.39229 * 119.89658 * 180.25966 * 7 6 5 9 9 C 1.34773 * 120.00518 * 46.09252 * 8 7 6 10 10 S 1.71201 * 119.99767 * 355.72236 * 9 8 7 11 11 N 1.34775 * 120.00025 * 175.72720 * 9 8 7 12 12 C 1.46504 * 120.00057 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00112 * 180.02562 * 11 9 8 14 14 C 1.50698 * 109.47389 * 89.99300 * 13 11 9 15 15 H 1.08003 * 120.00083 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00078 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00165 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47238 * 59.99668 * 18 16 14 20 20 H 1.48501 * 109.47362 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47079 * 300.00136 * 18 16 14 22 22 C 1.39243 * 120.19850 * 0.49979 * 7 6 5 23 23 C 1.36586 * 120.10391 * 359.75794 * 22 7 6 24 24 H 1.09006 * 109.47011 * 185.10134 * 1 2 3 25 25 H 1.09007 * 109.46858 * 305.09688 * 1 2 3 26 26 H 1.08993 * 109.47437 * 65.09708 * 1 2 3 27 27 H 1.08001 * 120.04800 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.94963 * 179.72667 * 6 5 4 29 29 H 0.97005 * 119.99639 * 226.09683 * 8 7 6 30 30 H 1.08997 * 109.46922 * 90.00527 * 12 11 9 31 31 H 1.08993 * 109.46925 * 210.00524 * 12 11 9 32 32 H 1.09001 * 109.46705 * 330.00322 * 12 11 9 33 33 H 1.08997 * 109.47083 * 209.99558 * 13 11 9 34 34 H 1.08997 * 109.47101 * 329.99600 * 13 11 9 35 35 H 0.97001 * 119.99939 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.94678 * 179.73146 * 22 7 6 37 37 H 1.07993 * 120.05320 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2411 -1.2714 -0.0006 5 6 3.6366 -1.2769 -0.1217 6 6 4.3150 -2.4624 -0.1274 7 6 3.6223 -3.6639 -0.0027 8 7 4.3185 -4.8696 -0.0036 9 6 5.4284 -5.0076 0.7483 10 16 6.0444 -3.6683 1.6189 11 7 6.0534 -6.1998 0.8149 12 6 5.5259 -7.3460 0.0702 13 6 7.2595 -6.3500 1.6327 14 6 6.8713 -6.7593 3.0301 15 1 5.8302 -6.8945 3.2836 16 6 7.8451 -6.9611 3.9849 17 7 9.1129 -6.7960 3.6764 18 14 7.3639 -7.4692 5.7169 19 1 6.6350 -8.7621 5.6691 20 1 8.5866 -7.6213 6.5459 21 1 6.4877 -6.4287 6.3126 22 6 2.2351 -3.6633 0.1179 23 6 1.5480 -2.4828 0.1193 24 1 -0.3633 -1.0237 0.0914 25 1 -0.3633 0.5909 0.8409 26 1 -0.3634 0.4327 -0.9320 27 1 4.1750 -0.3452 -0.2144 28 1 5.3905 -2.4676 -0.2252 29 1 4.0046 -5.6104 -0.5456 30 1 5.9745 -7.3717 -0.9228 31 1 5.7669 -8.2665 0.6017 32 1 4.4438 -7.2523 -0.0221 33 1 7.9021 -7.1142 1.1955 34 1 7.7952 -5.4013 1.6676 35 1 9.7980 -6.9384 4.3482 36 1 1.7015 -4.5978 0.2100 37 1 0.4721 -2.4833 0.2125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016212905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = 24.426347 kcal Electronic energy + Delta-G solvation = -20216.508418 eV Core-core repulsion = 17085.905529 eV Total energy + Delta-G solvation = -3130.602889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37051 -39.28021 -37.88504 -35.24591 -32.72253 -31.67330 -30.84280 -28.94447 -28.36640 -26.96820 -24.17281 -22.90670 -22.66682 -21.01474 -19.90908 -18.34100 -17.69720 -16.76220 -16.62069 -15.69872 -15.46442 -15.06385 -14.77754 -14.59899 -14.31635 -14.05947 -13.76376 -13.62685 -13.02193 -12.66543 -12.39774 -12.39069 -12.28698 -12.15658 -11.88447 -11.44970 -11.10307 -10.97027 -10.74599 -10.43852 -10.24014 -9.97506 -9.80998 -9.13498 -9.06442 -8.51562 -8.08650 -7.08809 -6.30406 -6.12689 -4.17392 0.55254 1.50877 1.88357 2.36357 2.56888 3.13512 3.28397 3.34268 3.38593 3.64137 3.86486 4.02480 4.39131 4.68363 4.83223 4.92439 4.98766 5.20959 5.23283 5.29685 5.34444 5.36001 5.47823 5.54819 5.69168 5.76377 5.99398 6.14353 6.20317 6.40387 6.50988 6.63516 6.96962 7.01172 7.32421 7.39300 7.47862 7.77526 7.81016 8.03957 8.80511 9.46106 10.95890 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.003691 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.748000 B = 7583.968025 C = 7910.728342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.397 3.603 3 O -0.465 6.465 4 C -0.183 4.183 5 C -0.054 4.054 6 C -0.083 4.083 7 C 0.180 3.820 8 N -0.655 5.655 9 C 0.546 3.454 10 S -0.621 6.621 11 N -0.533 5.533 12 C 0.059 3.941 13 C 0.235 3.765 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.889 5.889 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.147 4.147 23 C -0.071 4.071 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.155 0.845 29 H 0.402 0.598 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 2.647 -12.212 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.276 3.724 3 O -0.341 6.341 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.107 4.107 7 C 0.085 3.915 8 N -0.286 5.286 9 C 0.188 3.812 10 S -0.485 6.485 11 N -0.236 5.236 12 C -0.088 4.088 13 C 0.117 3.883 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.134 4.134 17 N -0.527 5.527 18 Si 0.728 3.272 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.168 4.168 23 C -0.091 4.091 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.152 0.848 28 H 0.173 0.827 29 H 0.241 0.759 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.470 3.843 -11.488 19.648 hybrid contribution -0.765 -1.718 0.464 1.937 sum -16.235 2.125 -11.023 19.738 Atomic orbital electron populations 1.22240 0.94247 1.04700 1.04668 1.22386 0.91456 0.87812 0.70769 1.90545 1.72119 1.34459 1.36995 1.20472 0.94806 0.94463 1.08764 1.20980 0.92521 0.98492 0.95438 1.21387 1.02344 0.90455 0.96479 1.17685 0.90499 0.85141 0.98197 1.42202 1.25791 1.14692 1.45891 1.22338 0.83058 0.91195 0.84565 1.93203 1.73190 1.26004 1.56149 1.47855 1.27726 1.05161 1.42870 1.22043 0.98264 0.91372 0.97095 1.20060 0.78604 1.00762 0.88855 1.21052 0.93349 1.47369 0.94494 0.92585 1.24825 0.94703 0.95081 0.98816 1.69901 0.99566 1.48422 1.34857 0.86516 0.77957 0.78843 0.83891 1.20414 1.21057 1.19918 1.20624 0.92495 0.98987 1.04665 1.20865 0.99593 0.90903 0.97690 0.89813 0.89080 0.88912 0.84808 0.82748 0.75892 0.91751 0.88628 0.92174 0.94168 0.90201 0.92447 0.85562 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 10.19 36.01 0.37 -1.07 16 2 C 0.40 4.62 7.20 -30.84 -0.22 4.40 16 3 O -0.46 -7.08 17.10 5.54 0.09 -6.98 16 4 C -0.18 -2.25 5.87 -105.05 -0.62 -2.86 16 5 C -0.05 -0.76 9.54 -39.49 -0.38 -1.14 16 6 C -0.08 -1.28 7.79 -39.80 -0.31 -1.59 16 7 C 0.18 2.54 5.91 -83.75 -0.49 2.04 16 8 N -0.66 -9.29 5.12 -11.39 -0.06 -9.35 16 9 C 0.55 10.41 7.55 -86.92 -0.66 9.75 16 10 S -0.62 -14.74 24.26 -107.50 -2.61 -17.34 16 11 N -0.53 -10.11 2.86 -185.00 -0.53 -10.64 16 12 C 0.06 0.76 10.17 59.85 0.61 1.37 16 13 C 0.24 5.69 4.92 -5.19 -0.03 5.66 16 14 C -0.52 -14.08 9.39 -34.44 -0.32 -14.40 16 15 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 16 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 22 C -0.15 -1.64 9.91 -39.80 -0.39 -2.04 16 23 C -0.07 -0.72 9.39 -39.49 -0.37 -1.09 16 24 H 0.08 0.42 5.61 -51.93 -0.29 0.13 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.13 1.89 7.65 -52.49 -0.40 1.49 16 28 H 0.16 2.68 6.16 -45.72 -0.28 2.40 16 29 H 0.40 4.19 6.61 -40.82 -0.27 3.92 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 33 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.88 5.94 -52.49 -0.31 0.57 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -34.51 326.49 -9.68 -44.20 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.31 Total: 2.72 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.91 Total: 0.83 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.15 Total: -44.87 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -6.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -14.74 SS G_CDS: -2.61 Total: -17.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.51 -9.68 -44.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016212905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.624 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds