Wall clock time and date at job start Tue Mar 31 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 120.00014 * 2 1 4 4 C 1.46813 * 120.00128 * 180.02562 * 2 1 3 5 5 C 1.40080 * 120.10168 * 174.26587 * 4 2 1 6 6 C 1.36587 * 119.90167 * 180.27686 * 5 4 2 7 7 C 1.39248 * 120.09694 * 359.50160 * 6 5 4 8 8 N 1.39229 * 119.89658 * 180.25966 * 7 6 5 9 9 C 1.34773 * 120.00518 * 46.09252 * 8 7 6 10 10 S 1.71201 * 119.99767 * 355.72236 * 9 8 7 11 11 N 1.34775 * 120.00025 * 175.72720 * 9 8 7 12 12 C 1.46504 * 120.00057 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00112 * 180.02562 * 11 9 8 14 14 C 1.50698 * 109.47389 * 89.99300 * 13 11 9 15 15 H 1.08003 * 120.00083 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00078 * 180.02562 * 14 13 11 17 17 N 1.31515 * 120.00165 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47238 * 59.99668 * 18 16 14 20 20 H 1.48501 * 109.47362 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47079 * 300.00136 * 18 16 14 22 22 C 1.39243 * 120.19850 * 0.49979 * 7 6 5 23 23 C 1.36586 * 120.10391 * 359.75794 * 22 7 6 24 24 H 1.09006 * 109.47011 * 185.10134 * 1 2 3 25 25 H 1.09007 * 109.46858 * 305.09688 * 1 2 3 26 26 H 1.08993 * 109.47437 * 65.09708 * 1 2 3 27 27 H 1.08001 * 120.04800 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.94963 * 179.72667 * 6 5 4 29 29 H 0.97005 * 119.99639 * 226.09683 * 8 7 6 30 30 H 1.08997 * 109.46922 * 90.00527 * 12 11 9 31 31 H 1.08993 * 109.46925 * 210.00524 * 12 11 9 32 32 H 1.09001 * 109.46705 * 330.00322 * 12 11 9 33 33 H 1.08997 * 109.47083 * 209.99558 * 13 11 9 34 34 H 1.08997 * 109.47101 * 329.99600 * 13 11 9 35 35 H 0.97001 * 119.99939 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.94678 * 179.73146 * 22 7 6 37 37 H 1.07993 * 120.05320 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2411 -1.2714 -0.0006 5 6 3.6366 -1.2769 -0.1217 6 6 4.3150 -2.4624 -0.1274 7 6 3.6223 -3.6639 -0.0027 8 7 4.3185 -4.8696 -0.0036 9 6 5.4284 -5.0076 0.7483 10 16 6.0444 -3.6683 1.6189 11 7 6.0534 -6.1998 0.8149 12 6 5.5259 -7.3460 0.0702 13 6 7.2595 -6.3500 1.6327 14 6 6.8713 -6.7593 3.0301 15 1 5.8302 -6.8945 3.2836 16 6 7.8451 -6.9611 3.9849 17 7 9.1129 -6.7960 3.6764 18 14 7.3639 -7.4692 5.7169 19 1 6.6350 -8.7621 5.6691 20 1 8.5866 -7.6213 6.5459 21 1 6.4877 -6.4287 6.3126 22 6 2.2351 -3.6633 0.1179 23 6 1.5480 -2.4828 0.1193 24 1 -0.3633 -1.0237 0.0914 25 1 -0.3633 0.5909 0.8409 26 1 -0.3634 0.4327 -0.9320 27 1 4.1750 -0.3452 -0.2144 28 1 5.3905 -2.4676 -0.2252 29 1 4.0046 -5.6104 -0.5456 30 1 5.9745 -7.3717 -0.9228 31 1 5.7669 -8.2665 0.6017 32 1 4.4438 -7.2523 -0.0221 33 1 7.9021 -7.1142 1.1955 34 1 7.7952 -5.4013 1.6676 35 1 9.7980 -6.9384 4.3482 36 1 1.7015 -4.5978 0.2100 37 1 0.4721 -2.4833 0.2125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016212905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:07 Heat of formation + Delta-G solvation = 2.826722 kcal Electronic energy + Delta-G solvation = -20217.445048 eV Core-core repulsion = 17085.905529 eV Total energy + Delta-G solvation = -3131.539519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49424 -40.45713 -39.11681 -36.59814 -34.69911 -32.64143 -31.86663 -30.18180 -29.63251 -28.44701 -25.75845 -24.09311 -23.96201 -22.40202 -20.88327 -19.60177 -19.04336 -18.71583 -17.72768 -17.00835 -16.75066 -16.38922 -16.08518 -15.93635 -15.46085 -15.33207 -15.05169 -14.59823 -14.24471 -14.02088 -13.72534 -13.58173 -13.27700 -13.16789 -12.94041 -12.91685 -12.81437 -12.62942 -12.22520 -12.10309 -12.05869 -11.77127 -10.76457 -10.63715 -10.54480 -10.08983 -9.33885 -8.87648 -8.22095 -8.07260 -6.33506 -0.50713 0.42231 0.53418 0.96146 1.36839 1.41876 1.43315 1.48827 1.67520 2.31514 2.42963 2.84937 3.11647 3.19405 3.81633 3.96087 3.97697 4.20072 4.28991 4.35870 4.40075 4.57475 4.62830 4.72131 4.73298 4.82005 4.95655 5.14982 5.18846 5.21046 5.29169 5.32915 5.50856 5.59000 5.72574 5.78630 5.96806 6.02535 6.37740 6.59712 6.70724 7.33317 8.85646 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.003691 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.748000 B = 7583.968025 C = 7910.728342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.395 3.605 3 O -0.512 6.512 4 C -0.188 4.188 5 C -0.075 4.075 6 C -0.100 4.100 7 C 0.154 3.846 8 N -0.622 5.622 9 C 0.571 3.429 10 S -0.734 6.734 11 N -0.536 5.536 12 C 0.049 3.951 13 C 0.252 3.748 14 C -0.528 4.528 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.923 5.923 18 Si 0.961 3.039 19 H -0.258 1.258 20 H -0.281 1.281 21 H -0.284 1.284 22 C -0.131 4.131 23 C -0.052 4.052 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.426 0.574 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.166 0.834 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.104 0.427 -12.970 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.277 3.723 3 O -0.392 6.392 4 C -0.190 4.190 5 C -0.096 4.096 6 C -0.123 4.123 7 C 0.060 3.940 8 N -0.254 5.254 9 C 0.209 3.791 10 S -0.602 6.602 11 N -0.237 5.237 12 C -0.094 4.094 13 C 0.131 3.869 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.563 5.563 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.210 1.210 22 C -0.151 4.151 23 C -0.071 4.071 24 H 0.132 0.868 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.270 0.730 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.184 0.816 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.088 1.579 -12.320 23.618 hybrid contribution 0.536 -1.012 0.552 1.271 sum -19.552 0.567 -11.767 22.827 Atomic orbital electron populations 1.22278 0.89742 1.07037 1.05867 1.23114 0.93753 0.86581 0.68851 1.90541 1.73537 1.35860 1.39275 1.20796 0.93866 0.96382 1.07970 1.20937 0.94145 0.97505 0.96976 1.21120 1.01037 0.91952 0.98165 1.17938 0.91895 0.84151 1.00062 1.41918 1.23561 1.15628 1.44254 1.21629 0.83817 0.89500 0.84146 1.93452 1.76250 1.29800 1.60674 1.47650 1.26627 1.06715 1.42714 1.22468 1.00784 0.88661 0.97523 1.19463 0.80294 0.98266 0.88890 1.21300 0.92985 1.46586 0.95810 0.93031 1.25648 0.94718 0.95320 1.02627 1.70015 1.00511 1.49719 1.36034 0.85567 0.77649 0.78870 0.79312 1.18266 1.20637 1.20964 1.21041 0.90725 1.01131 1.02241 1.21392 1.01843 0.89124 0.94723 0.86778 0.88240 0.87200 0.86610 0.86050 0.72986 0.88699 0.88841 0.88166 0.94355 0.94329 0.92467 0.81607 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 10.19 71.24 0.73 -1.21 16 2 C 0.39 8.58 7.20 27.93 0.20 8.78 16 3 O -0.51 -15.91 17.10 -3.10 -0.05 -15.96 16 4 C -0.19 -4.33 5.87 -20.14 -0.12 -4.45 16 5 C -0.08 -2.26 9.54 22.33 0.21 -2.05 16 6 C -0.10 -3.22 7.79 22.13 0.17 -3.05 16 7 C 0.15 4.09 5.91 38.45 0.23 4.32 16 8 N -0.62 -16.28 5.12 -189.95 -0.97 -17.26 16 9 C 0.57 21.72 7.55 179.06 1.35 23.07 16 10 S -0.73 -37.10 24.26 -56.49 -1.37 -38.47 16 11 N -0.54 -19.90 2.86 -739.22 -2.11 -22.01 16 12 C 0.05 1.11 10.17 127.77 1.30 2.41 16 13 C 0.25 12.46 4.92 85.63 0.42 12.88 16 14 C -0.53 -28.71 9.39 25.60 0.24 -28.47 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.02 0.93 5.46 84.65 0.46 1.39 16 17 N -0.92 -54.56 13.29 21.44 0.28 -54.27 16 18 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 C -0.13 -2.34 9.91 22.13 0.22 -2.12 16 23 C -0.05 -0.81 9.39 22.33 0.21 -0.60 16 24 H 0.11 0.41 5.61 -2.38 -0.01 0.40 16 25 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 3.73 7.65 -2.91 -0.02 3.71 16 28 H 0.12 4.70 6.16 -7.22 -0.04 4.66 16 29 H 0.43 7.02 6.61 -92.70 -0.61 6.41 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.24 8.07 -2.39 -0.02 2.22 16 32 H 0.10 1.46 6.43 -2.39 -0.02 1.44 16 33 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.04 2.26 6.58 -2.39 -0.02 2.24 16 35 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.18 1.04 5.94 -2.91 -0.02 1.02 16 Total: -1.00 -83.61 326.49 3.89 -79.71 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.47 Total: 10.90 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.63 Total: 10.91 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -2.80 Total: -93.54 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.05 Total: -15.96 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -37.10 SS G_CDS: -1.37 Total: -38.47 kcal Total: -83.61 3.89 -79.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016212905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.538 kcal (2) G-P(sol) polarization free energy of solvation -83.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds