Wall clock time and date at job start Tue Mar 31 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00235 * 2 1 4 4 C 1.50701 * 119.99648 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47049 * 95.00182 * 4 2 1 6 6 C 1.34779 * 120.00002 * 179.97438 * 5 4 2 7 7 S 1.71197 * 119.99855 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99868 * 180.02562 * 6 5 4 9 9 C 1.39964 * 119.99688 * 175.79864 * 8 6 5 10 10 C 1.38930 * 120.00722 * 44.60633 * 9 8 6 11 11 C 1.38004 * 119.99856 * 180.02562 * 10 9 8 12 12 C 1.38904 * 120.00381 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99898 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00088 * 6.55381 * 13 12 11 15 15 H 1.08001 * 119.99585 * 5.48303 * 14 13 12 16 16 C 1.38622 * 120.00019 * 185.48747 * 14 13 12 17 17 N 1.31579 * 119.99840 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46745 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.47191 * 210.00395 * 18 16 14 21 21 H 1.48498 * 109.46850 * 330.00510 * 18 16 14 22 22 C 1.38913 * 120.00484 * 0.23956 * 12 11 10 23 23 C 1.38008 * 119.99856 * 359.48370 * 22 12 11 24 24 H 1.07998 * 119.99417 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00084 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47119 * 270.00225 * 3 2 1 27 27 H 1.08998 * 109.46870 * 29.99901 * 3 2 1 28 28 H 1.09000 * 109.46805 * 149.99559 * 3 2 1 29 29 H 1.08998 * 109.47311 * 334.99934 * 4 2 1 30 30 H 1.09005 * 109.47124 * 215.00241 * 4 2 1 31 31 H 0.96998 * 120.00253 * 359.97438 * 5 4 2 32 32 H 0.96996 * 119.99848 * 355.79119 * 8 6 5 33 33 H 1.07997 * 119.99716 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.99396 * 180.02562 * 11 10 9 35 35 H 0.96994 * 120.00268 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.00080 * 179.74689 * 22 12 11 37 37 H 1.07996 * 119.99743 * 180.26171 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4119 -1.6685 -1.3752 6 6 3.0934 -2.8052 -1.6200 7 16 3.5514 -3.8248 -0.3233 8 7 3.4144 -3.1392 -2.8857 9 6 4.1973 -4.2726 -3.1332 10 6 3.9278 -5.4620 -2.4677 11 6 4.7002 -6.5794 -2.7115 12 6 5.7474 -6.5148 -3.6218 13 8 6.5076 -7.6141 -3.8612 14 6 6.1119 -8.7685 -3.2883 15 1 5.1794 -8.8098 -2.7449 16 6 6.9018 -9.9025 -3.3966 17 7 6.5154 -11.0293 -2.8378 18 14 8.5143 -9.8312 -4.3370 19 1 9.6121 -9.4577 -3.4094 20 1 8.7998 -11.1617 -4.9316 21 1 8.4127 -8.8176 -5.4175 22 6 6.0204 -5.3242 -4.2832 23 6 5.2445 -4.2082 -4.0438 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2452 1.6197 -1.0276 27 1 1.4745 2.0647 0.5138 28 1 3.0160 1.1746 0.5139 29 1 1.4385 -2.0853 0.4352 30 1 2.9742 -1.1987 0.5900 31 1 2.1521 -1.0910 -2.1100 32 1 3.1028 -2.5940 -3.6250 33 1 3.1139 -5.5121 -1.7596 34 1 4.4904 -7.5041 -2.1944 35 1 7.0679 -11.8228 -2.9139 36 1 6.8371 -5.2729 -4.9880 37 1 5.4542 -3.2837 -4.5612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:08 Heat of formation + Delta-G solvation = 44.109156 kcal Electronic energy + Delta-G solvation = -19758.896559 eV Core-core repulsion = 16629.147181 eV Total energy + Delta-G solvation = -3129.749379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83292 -38.79927 -37.46328 -35.75301 -33.70502 -32.30649 -30.31511 -28.62369 -27.79876 -26.51977 -25.04888 -24.02379 -22.00380 -21.32196 -19.51702 -18.55500 -17.76570 -17.68021 -16.95797 -15.76938 -15.65153 -15.39605 -14.85968 -14.52917 -14.14634 -13.86839 -13.80327 -13.68153 -13.53849 -12.79759 -12.65228 -12.31793 -12.21287 -12.07805 -11.69886 -11.59695 -11.30621 -10.95350 -10.81102 -10.74967 -10.18172 -9.79579 -9.56741 -9.36219 -8.80457 -8.37870 -7.73852 -7.26776 -6.72608 -6.39886 -4.05175 1.28779 1.41525 2.08486 2.17547 2.31658 2.79878 3.23921 3.28454 3.41672 3.55372 4.19153 4.25300 4.42941 4.49554 4.85413 4.96898 5.11128 5.14546 5.26859 5.33404 5.42631 5.49886 5.52776 5.67698 5.77399 6.01188 6.06393 6.19157 6.25606 6.31156 6.52579 6.68096 6.83451 6.98293 7.15665 7.35647 7.43772 7.62722 7.84004 8.05012 8.94813 9.55964 10.67458 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040038 B = 0.002951 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.159421 B = 9485.362168 C = 9863.096197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.154 4.154 3 C -0.120 4.120 4 C 0.163 3.837 5 N -0.687 5.687 6 C 0.550 3.450 7 S -0.625 6.625 8 N -0.610 5.610 9 C 0.013 3.987 10 C -0.015 4.015 11 C -0.217 4.217 12 C 0.168 3.832 13 O -0.212 6.212 14 C -0.387 4.387 15 H 0.109 0.891 16 C 0.063 3.937 17 N -0.876 5.876 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.192 4.192 23 C -0.073 4.073 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.394 0.606 32 H 0.398 0.602 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.280 0.720 36 H 0.121 0.879 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 23.401 0.042 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.177 4.177 4 C 0.040 3.960 5 N -0.317 5.317 6 C 0.191 3.809 7 S -0.496 6.496 8 N -0.232 5.232 9 C -0.080 4.080 10 C -0.037 4.037 11 C -0.237 4.237 12 C 0.114 3.886 13 O -0.117 6.117 14 C -0.462 4.462 15 H 0.126 0.874 16 C -0.140 4.140 17 N -0.513 5.513 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.212 4.212 23 C -0.094 4.094 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.230 0.770 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.905 22.419 0.964 24.528 hybrid contribution 0.100 0.973 -1.522 1.810 sum -9.804 23.392 -0.558 25.370 Atomic orbital electron populations 1.23970 0.95163 1.02595 0.98062 1.21881 0.95528 0.95474 1.02538 1.20879 1.00523 0.94069 1.02184 1.20662 1.00800 0.93597 0.80966 1.44947 1.55579 1.20616 1.10605 1.22413 0.82307 0.86119 0.90019 1.93546 1.70888 1.52390 1.32750 1.42054 1.49777 1.27156 1.04239 1.17001 0.98280 0.85396 1.07288 1.21115 0.98834 0.89509 0.94244 1.21140 0.99551 0.99876 1.03167 1.19215 0.90281 0.86979 0.92076 1.83575 1.47929 1.15503 1.64649 1.20811 1.07917 0.83582 1.33901 0.87381 1.24487 0.99045 0.93869 0.96637 1.69659 1.38898 1.00618 1.42158 0.86182 0.82275 0.77739 0.80718 1.19842 1.20785 1.18325 1.19883 1.03945 0.91366 1.06005 1.20300 0.93117 0.97550 0.98396 0.87806 0.87860 0.91558 0.91515 0.91349 0.89092 0.89009 0.77004 0.76591 0.84464 0.84464 0.91004 0.86077 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 13.89 29.01 0.40 -0.46 16 2 C -0.15 -0.95 5.42 -101.07 -0.55 -1.50 16 3 C -0.12 -0.61 10.03 36.01 0.36 -0.25 16 4 C 0.16 1.42 5.29 -5.19 -0.03 1.39 16 5 N -0.69 -6.12 5.55 -63.21 -0.35 -6.47 16 6 C 0.55 7.29 7.85 -86.92 -0.68 6.61 16 7 S -0.62 -11.64 24.77 -107.50 -2.66 -14.30 16 8 N -0.61 -7.58 5.32 -11.36 -0.06 -7.64 16 9 C 0.01 0.21 5.96 -83.63 -0.50 -0.29 16 10 C -0.01 -0.29 7.86 -39.41 -0.31 -0.60 16 11 C -0.22 -4.85 9.12 -39.42 -0.36 -5.20 16 12 C 0.17 3.87 6.65 -39.09 -0.26 3.61 16 13 O -0.21 -5.59 8.58 0.00 0.00 -5.59 16 14 C -0.39 -10.95 9.89 30.87 0.31 -10.64 16 15 H 0.11 3.15 5.54 -52.49 -0.29 2.85 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.48 13.96 55.48 0.77 -24.71 16 18 Si 0.91 21.69 28.62 -169.99 -4.86 16.83 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.19 -3.69 9.99 -39.42 -0.39 -4.09 16 23 C -0.07 -1.18 9.96 -39.41 -0.39 -1.58 16 24 H 0.10 0.43 8.04 -52.49 -0.42 0.01 16 25 H 0.10 0.58 7.99 -52.49 -0.42 0.16 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.28 8.06 -51.93 -0.42 -0.13 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 30 H 0.09 0.93 7.95 -51.93 -0.41 0.52 16 31 H 0.39 2.32 8.48 -40.82 -0.35 1.97 16 32 H 0.40 3.33 8.84 -40.82 -0.36 2.97 16 33 H 0.14 2.73 6.01 -42.15 -0.25 2.47 16 34 H 0.14 3.27 5.72 -52.49 -0.30 2.97 16 35 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -33.00 330.63 -9.13 -42.13 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.45 Total: 6.08 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.50 Total: -11.31 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.36 Total: -38.82 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: -11.64 SS G_CDS: -2.66 Total: -14.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.00 -9.13 -42.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.240 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds