Wall clock time and date at job start Tue Mar 31 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00235 * 2 1 4 4 C 1.50701 * 119.99648 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47049 * 95.00182 * 4 2 1 6 6 C 1.34779 * 120.00002 * 179.97438 * 5 4 2 7 7 S 1.71197 * 119.99855 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99868 * 180.02562 * 6 5 4 9 9 C 1.39964 * 119.99688 * 175.79864 * 8 6 5 10 10 C 1.38930 * 120.00722 * 44.60633 * 9 8 6 11 11 C 1.38004 * 119.99856 * 180.02562 * 10 9 8 12 12 C 1.38904 * 120.00381 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99898 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00088 * 6.55381 * 13 12 11 15 15 H 1.08001 * 119.99585 * 5.48303 * 14 13 12 16 16 C 1.38622 * 120.00019 * 185.48747 * 14 13 12 17 17 N 1.31579 * 119.99840 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46745 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.47191 * 210.00395 * 18 16 14 21 21 H 1.48498 * 109.46850 * 330.00510 * 18 16 14 22 22 C 1.38913 * 120.00484 * 0.23956 * 12 11 10 23 23 C 1.38008 * 119.99856 * 359.48370 * 22 12 11 24 24 H 1.07998 * 119.99417 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00084 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47119 * 270.00225 * 3 2 1 27 27 H 1.08998 * 109.46870 * 29.99901 * 3 2 1 28 28 H 1.09000 * 109.46805 * 149.99559 * 3 2 1 29 29 H 1.08998 * 109.47311 * 334.99934 * 4 2 1 30 30 H 1.09005 * 109.47124 * 215.00241 * 4 2 1 31 31 H 0.96998 * 120.00253 * 359.97438 * 5 4 2 32 32 H 0.96996 * 119.99848 * 355.79119 * 8 6 5 33 33 H 1.07997 * 119.99716 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.99396 * 180.02562 * 11 10 9 35 35 H 0.96994 * 120.00268 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.00080 * 179.74689 * 22 12 11 37 37 H 1.07996 * 119.99743 * 180.26171 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4119 -1.6685 -1.3752 6 6 3.0934 -2.8052 -1.6200 7 16 3.5514 -3.8248 -0.3233 8 7 3.4144 -3.1392 -2.8857 9 6 4.1973 -4.2726 -3.1332 10 6 3.9278 -5.4620 -2.4677 11 6 4.7002 -6.5794 -2.7115 12 6 5.7474 -6.5148 -3.6218 13 8 6.5076 -7.6141 -3.8612 14 6 6.1119 -8.7685 -3.2883 15 1 5.1794 -8.8098 -2.7449 16 6 6.9018 -9.9025 -3.3966 17 7 6.5154 -11.0293 -2.8378 18 14 8.5143 -9.8312 -4.3370 19 1 9.6121 -9.4577 -3.4094 20 1 8.7998 -11.1617 -4.9316 21 1 8.4127 -8.8176 -5.4175 22 6 6.0204 -5.3242 -4.2832 23 6 5.2445 -4.2082 -4.0438 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2452 1.6197 -1.0276 27 1 1.4745 2.0647 0.5138 28 1 3.0160 1.1746 0.5139 29 1 1.4385 -2.0853 0.4352 30 1 2.9742 -1.1987 0.5900 31 1 2.1521 -1.0910 -2.1100 32 1 3.1028 -2.5940 -3.6250 33 1 3.1139 -5.5121 -1.7596 34 1 4.4904 -7.5041 -2.1944 35 1 7.0679 -11.8228 -2.9139 36 1 6.8371 -5.2729 -4.9880 37 1 5.4542 -3.2837 -4.5612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:08 Heat of formation + Delta-G solvation = 22.483090 kcal Electronic energy + Delta-G solvation = -19759.834336 eV Core-core repulsion = 16629.147181 eV Total energy + Delta-G solvation = -3130.687155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26489 -40.21498 -38.70650 -36.88670 -34.79968 -34.28814 -31.90864 -30.04153 -28.27549 -27.63758 -26.84680 -25.22922 -23.54638 -22.86147 -20.37572 -20.06710 -19.43514 -18.86211 -18.49316 -17.02437 -16.72950 -16.42936 -16.26407 -15.78857 -15.67563 -15.40485 -15.19255 -14.77309 -14.42784 -14.19200 -14.08188 -13.93754 -13.40919 -13.33016 -12.89335 -12.62520 -12.51297 -12.44257 -12.27856 -12.08350 -11.96046 -11.37819 -10.96973 -10.50388 -10.25834 -9.92955 -9.18116 -8.87898 -8.48107 -8.24011 -6.20513 0.02236 0.59226 0.63225 0.84641 1.01948 1.33783 1.39145 1.54887 1.69921 2.30414 2.61680 2.76643 3.10511 3.12491 3.61589 3.92233 4.10017 4.15441 4.42659 4.48439 4.49081 4.60368 4.70497 4.74492 4.80120 4.94320 4.95844 5.13754 5.14578 5.27047 5.32967 5.54381 5.59395 5.60029 5.77536 5.79287 5.84985 5.98353 6.23302 6.40820 6.85566 7.57490 8.63806 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040038 B = 0.002951 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.159421 B = 9485.362168 C = 9863.096197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C -0.118 4.118 4 C 0.163 3.837 5 N -0.650 5.650 6 C 0.579 3.421 7 S -0.732 6.732 8 N -0.594 5.594 9 C 0.042 3.958 10 C -0.023 4.023 11 C -0.235 4.235 12 C 0.132 3.868 13 O -0.237 6.237 14 C -0.398 4.398 15 H 0.077 0.923 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.975 3.025 19 H -0.269 1.269 20 H -0.267 1.267 21 H -0.255 1.255 22 C -0.185 4.185 23 C -0.054 4.054 24 H 0.123 0.877 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.418 0.582 32 H 0.428 0.572 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.285 0.715 36 H 0.144 0.856 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 28.336 -2.182 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.040 3.960 5 N -0.279 5.279 6 C 0.216 3.784 7 S -0.604 6.604 8 N -0.219 5.219 9 C -0.051 4.051 10 C -0.045 4.045 11 C -0.256 4.256 12 C 0.082 3.918 13 O -0.144 6.144 14 C -0.474 4.474 15 H 0.094 0.906 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.205 4.205 23 C -0.074 4.074 24 H 0.142 0.858 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.270 0.730 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.162 0.838 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.381 27.476 -1.285 29.400 hybrid contribution -0.112 -0.104 -0.751 0.767 sum -10.493 27.372 -2.036 29.385 Atomic orbital electron populations 1.24144 0.94865 1.03443 0.96035 1.21718 0.95597 0.94445 1.04245 1.20887 1.00105 0.93507 1.02977 1.20695 1.00357 0.94848 0.80128 1.44906 1.52370 1.18710 1.11962 1.21690 0.81801 0.86203 0.88723 1.93929 1.74768 1.55444 1.36253 1.41686 1.49199 1.26252 1.04808 1.17025 0.97731 0.85322 1.05051 1.21100 0.98564 0.90146 0.94698 1.21010 1.00893 0.99783 1.03916 1.19761 0.90688 0.87786 0.93540 1.83514 1.49197 1.15498 1.66199 1.20679 1.07360 0.85275 1.34094 0.90586 1.25358 1.02690 0.93285 0.97756 1.69755 1.40736 1.01471 1.44552 0.85164 0.77582 0.78331 0.79311 1.19366 1.19178 1.17912 1.20292 1.04645 0.90336 1.05202 1.20791 0.90932 0.98506 0.97137 0.85842 0.88180 0.90416 0.90442 0.92190 0.90405 0.90326 0.74131 0.73022 0.85132 0.87933 0.90560 0.83835 0.81179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 13.89 67.78 0.94 -0.15 16 2 C -0.16 -1.47 5.42 -16.49 -0.09 -1.56 16 3 C -0.12 -0.79 10.03 71.24 0.71 -0.08 16 4 C 0.16 2.50 5.29 85.63 0.45 2.95 16 5 N -0.65 -9.24 5.55 -353.90 -1.97 -11.21 16 6 C 0.58 13.75 7.85 179.05 1.40 15.16 16 7 S -0.73 -27.59 24.77 -56.49 -1.40 -28.99 16 8 N -0.59 -12.13 5.32 -189.86 -1.01 -13.14 16 9 C 0.04 1.28 5.96 38.17 0.23 1.50 16 10 C -0.02 -0.90 7.86 22.38 0.18 -0.73 16 11 C -0.24 -11.17 9.12 22.37 0.20 -10.97 16 12 C 0.13 6.25 6.65 22.59 0.15 6.40 16 13 O -0.24 -12.99 8.58 -22.91 -0.20 -13.19 16 14 C -0.40 -24.11 9.89 67.91 0.67 -23.44 16 15 H 0.08 4.92 5.54 -2.91 -0.02 4.91 16 16 C 0.01 0.43 5.49 84.82 0.47 0.90 16 17 N -0.92 -56.83 13.96 21.61 0.30 -56.53 16 18 Si 0.97 45.95 28.62 68.60 1.96 47.92 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.18 -6.66 9.99 22.38 0.22 -6.44 16 23 C -0.05 -1.48 9.96 22.38 0.22 -1.26 16 24 H 0.12 0.50 8.04 -2.91 -0.02 0.48 16 25 H 0.10 0.83 7.99 -2.91 -0.02 0.81 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 0.38 8.06 -2.39 -0.02 0.36 16 28 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.08 1.49 7.84 -2.39 -0.02 1.47 16 30 H 0.08 1.51 7.95 -2.38 -0.02 1.49 16 31 H 0.42 2.66 8.48 -92.71 -0.79 1.88 16 32 H 0.43 4.38 8.84 -92.71 -0.82 3.56 16 33 H 0.13 5.40 6.01 -9.48 -0.06 5.34 16 34 H 0.10 5.51 5.72 -2.91 -0.02 5.49 16 35 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -80.11 330.63 2.92 -77.19 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.53 Total: 15.64 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.77 Total: -17.70 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.67 Total: -80.87 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.20 Total: -13.19 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.96 Total: 47.92 kcal Atomic # 16 Polarization: -27.59 SS G_CDS: -1.40 Total: -28.99 kcal Total: -80.11 2.92 -77.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.669 kcal (2) G-P(sol) polarization free energy of solvation -80.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds