Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48504 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46827 * 299.99129 * 3 2 1 6 6 H 1.48493 * 109.47547 * 59.99267 * 3 2 1 7 7 C 1.38796 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99465 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00152 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99795 * 4.88178 * 11 10 9 13 13 N 1.34774 * 120.00340 * 184.87467 * 11 10 9 14 14 C 1.46499 * 119.99672 * 356.48878 * 13 11 10 15 15 C 1.50698 * 109.47273 * 89.99819 * 14 13 11 16 16 C 1.38224 * 119.62117 * 94.99982 * 15 14 13 17 17 C 1.38632 * 119.16208 * 179.97438 * 16 15 14 18 18 C 1.38675 * 118.42133 * 0.02562 * 17 16 15 19 19 C 1.38181 * 119.16058 * 359.97438 * 18 17 16 20 20 N 1.31855 * 119.61662 * 274.71893 * 15 14 13 21 21 C 1.46497 * 120.00321 * 176.20589 * 13 11 10 22 22 C 1.53001 * 117.49660 * 17.07089 * 21 13 11 23 23 C 1.53001 * 117.49949 * 308.44797 * 21 13 11 24 24 H 0.97001 * 119.99653 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47633 * 60.00038 * 10 9 7 26 26 H 1.09001 * 109.47276 * 299.99718 * 10 9 7 27 27 H 1.09003 * 109.47069 * 209.99710 * 14 13 11 28 28 H 1.09002 * 109.47142 * 329.99190 * 14 13 11 29 29 H 1.08002 * 120.42188 * 359.95389 * 16 15 14 30 30 H 1.08005 * 120.79067 * 180.02562 * 17 16 15 31 31 H 1.07992 * 120.42127 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.61786 * 180.02562 * 19 18 17 33 33 H 1.08996 * 115.55176 * 162.77563 * 21 13 11 34 34 H 1.08994 * 117.50237 * 359.97438 * 22 21 13 35 35 H 1.09001 * 117.50074 * 145.01996 * 22 21 13 36 36 H 1.08997 * 117.50127 * 214.97323 * 23 21 13 37 37 H 1.08997 * 117.50101 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3966 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7947 -5.5036 -0.0889 13 7 2.8400 -6.3416 0.1019 14 6 4.2850 -6.1028 0.1337 15 6 4.7332 -5.9231 1.5612 16 6 5.2277 -7.0060 2.2635 17 6 5.6378 -6.8298 3.5760 18 6 5.5342 -5.5653 4.1358 19 6 5.0297 -4.5302 3.3720 20 7 4.6542 -4.7333 2.1241 21 6 2.3216 -7.7093 0.1853 22 6 0.8706 -7.9419 -0.2405 23 6 1.2514 -7.9961 1.2404 24 1 -0.4850 0.8401 -0.0004 25 1 3.1237 -3.7310 0.8925 26 1 3.1251 -3.7318 -0.8875 27 1 4.8039 -6.9549 -0.3055 28 1 4.5172 -5.2030 -0.4361 29 1 5.2935 -7.9773 1.7958 30 1 6.0287 -7.6577 4.1490 31 1 5.8446 -5.3915 5.1554 32 1 4.9461 -3.5423 3.8004 33 1 3.0419 -8.4989 -0.0285 34 1 0.3015 -7.0774 -0.5822 35 1 0.6360 -8.8848 -0.7346 36 1 1.2673 -8.9745 1.7205 37 1 0.9333 -7.1673 1.8728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041789512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = 49.135281 kcal Electronic energy + Delta-G solvation = -20842.614540 eV Core-core repulsion = 17713.083111 eV Total energy + Delta-G solvation = -3129.531429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56439 -39.61496 -36.13024 -34.80992 -32.51429 -32.33700 -31.36630 -28.83650 -26.63635 -25.40051 -23.64382 -22.67370 -22.22877 -22.14083 -19.01592 -17.65990 -17.09933 -16.60606 -16.42927 -15.84896 -15.70974 -14.89465 -14.72510 -14.24079 -13.95485 -13.87594 -13.56696 -13.23717 -13.07995 -12.64850 -12.44864 -12.28982 -12.12565 -11.76905 -11.25038 -11.02369 -10.93269 -10.86606 -10.67854 -10.24491 -9.98369 -9.71153 -9.47355 -9.17061 -8.98199 -8.82760 -8.28069 -8.09568 -6.37684 -6.13072 -3.81241 0.95035 1.18398 2.88770 3.06015 3.26611 3.30227 3.36192 3.64389 3.84638 4.04014 4.20635 4.29177 4.55581 4.75882 4.79287 4.88972 4.98899 5.00853 5.13922 5.21749 5.22379 5.31997 5.38168 5.53198 5.61450 5.64361 5.75814 5.87976 5.96829 6.03752 6.12703 6.20772 6.45384 6.53697 6.68630 6.97045 7.54617 7.70164 7.96000 8.46050 8.64412 9.32762 10.94655 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.005361 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.389808 B = 5221.955806 C = 6699.876573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.073 0.927 9 S -0.070 6.070 10 C -0.160 4.160 11 C 0.541 3.459 12 O -0.508 6.508 13 N -0.588 5.588 14 C 0.164 3.836 15 C 0.109 3.891 16 C -0.159 4.159 17 C -0.078 4.078 18 C -0.174 4.174 19 C 0.106 3.894 20 N -0.463 5.463 21 C 0.070 3.930 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.266 0.734 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -16.913 5.051 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.673 4.673 8 H 0.091 0.909 9 S 0.157 5.843 10 C -0.310 4.310 11 C 0.331 3.669 12 O -0.384 6.384 13 N -0.321 5.321 14 C 0.039 3.961 15 C -0.031 4.031 16 C -0.179 4.179 17 C -0.104 4.104 18 C -0.194 4.194 19 C -0.051 4.051 20 N -0.172 5.172 21 C -0.034 4.034 22 C -0.232 4.232 23 C -0.230 4.230 24 H 0.076 0.924 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.140 0.860 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.869 -16.386 4.478 20.166 hybrid contribution 2.430 0.462 0.786 2.595 sum 13.298 -15.924 5.264 21.404 Atomic orbital electron populations 1.70042 1.05915 1.27106 1.47546 1.24976 0.94985 0.98910 0.94800 0.86148 0.79680 0.82078 0.77788 1.19601 1.20671 1.20686 1.22889 0.94941 0.91494 1.58020 0.90873 1.85243 1.05585 0.96664 1.96768 1.23795 1.06487 0.94401 1.06327 1.20537 0.85928 0.86286 0.74168 1.90452 1.15674 1.84351 1.47890 1.47321 1.05426 1.05066 1.74254 1.20391 0.80826 1.03881 0.90954 1.21733 0.94853 0.89024 0.97453 1.21900 1.00793 0.99808 0.95448 1.21545 0.96662 0.97349 0.94868 1.22169 1.01641 0.94104 1.01485 1.22884 0.93114 0.99609 0.89466 1.67518 1.13904 1.23651 1.12143 1.21596 0.92010 0.84149 1.05661 1.24122 0.97096 1.05000 0.97001 1.23209 1.04171 1.02374 0.93221 0.92420 0.86260 0.89687 0.88697 0.88007 0.85055 0.85033 0.84875 0.82436 0.85979 0.83322 0.89781 0.89117 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 9 S -0.07 -1.94 20.58 -107.50 -2.21 -4.16 16 10 C -0.16 -3.47 4.70 36.00 0.17 -3.30 16 11 C 0.54 10.72 7.45 -10.99 -0.08 10.64 16 12 O -0.51 -11.50 11.76 5.55 0.07 -11.44 16 13 N -0.59 -8.77 2.82 -167.47 -0.47 -9.24 16 14 C 0.16 1.95 5.53 -5.20 -0.03 1.92 16 15 C 0.11 1.36 6.36 -82.59 -0.52 0.84 16 16 C -0.16 -1.56 9.72 -39.44 -0.38 -1.94 16 17 C -0.08 -0.70 10.18 -39.27 -0.40 -1.10 16 18 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 19 C 0.11 1.33 11.18 -17.55 -0.20 1.13 16 20 N -0.46 -6.88 8.08 -9.47 -0.08 -6.96 16 21 C 0.07 0.90 6.62 -67.93 -0.45 0.45 16 22 C -0.20 -2.78 9.64 -26.73 -0.26 -3.04 16 23 C -0.19 -2.61 9.90 -26.73 -0.26 -2.88 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.12 2.55 5.71 -51.92 -0.30 2.26 16 26 H 0.08 1.74 7.55 -51.92 -0.39 1.35 16 27 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 28 H 0.10 1.28 6.60 -51.93 -0.34 0.94 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.12 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.15 2.71 4.96 -53.42 -0.26 2.45 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.59 7.83 -51.93 -0.41 1.19 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -35.43 327.00 -9.29 -44.72 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.62 Total: 3.73 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.62 Total: -12.43 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.18 Total: -42.21 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.21 Total: -4.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.43 -9.29 -44.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041789512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.853 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds