Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48504 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46827 * 299.99129 * 3 2 1 6 6 H 1.48493 * 109.47547 * 59.99267 * 3 2 1 7 7 C 1.38796 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99465 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00152 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99795 * 4.88178 * 11 10 9 13 13 N 1.34774 * 120.00340 * 184.87467 * 11 10 9 14 14 C 1.46499 * 119.99672 * 356.48878 * 13 11 10 15 15 C 1.50698 * 109.47273 * 89.99819 * 14 13 11 16 16 C 1.38224 * 119.62117 * 94.99982 * 15 14 13 17 17 C 1.38632 * 119.16208 * 179.97438 * 16 15 14 18 18 C 1.38675 * 118.42133 * 0.02562 * 17 16 15 19 19 C 1.38181 * 119.16058 * 359.97438 * 18 17 16 20 20 N 1.31855 * 119.61662 * 274.71893 * 15 14 13 21 21 C 1.46497 * 120.00321 * 176.20589 * 13 11 10 22 22 C 1.53001 * 117.49660 * 17.07089 * 21 13 11 23 23 C 1.53001 * 117.49949 * 308.44797 * 21 13 11 24 24 H 0.97001 * 119.99653 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47633 * 60.00038 * 10 9 7 26 26 H 1.09001 * 109.47276 * 299.99718 * 10 9 7 27 27 H 1.09003 * 109.47069 * 209.99710 * 14 13 11 28 28 H 1.09002 * 109.47142 * 329.99190 * 14 13 11 29 29 H 1.08002 * 120.42188 * 359.95389 * 16 15 14 30 30 H 1.08005 * 120.79067 * 180.02562 * 17 16 15 31 31 H 1.07992 * 120.42127 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.61786 * 180.02562 * 19 18 17 33 33 H 1.08996 * 115.55176 * 162.77563 * 21 13 11 34 34 H 1.08994 * 117.50237 * 359.97438 * 22 21 13 35 35 H 1.09001 * 117.50074 * 145.01996 * 22 21 13 36 36 H 1.08997 * 117.50127 * 214.97323 * 23 21 13 37 37 H 1.08997 * 117.50101 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3966 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7947 -5.5036 -0.0889 13 7 2.8400 -6.3416 0.1019 14 6 4.2850 -6.1028 0.1337 15 6 4.7332 -5.9231 1.5612 16 6 5.2277 -7.0060 2.2635 17 6 5.6378 -6.8298 3.5760 18 6 5.5342 -5.5653 4.1358 19 6 5.0297 -4.5302 3.3720 20 7 4.6542 -4.7333 2.1241 21 6 2.3216 -7.7093 0.1853 22 6 0.8706 -7.9419 -0.2405 23 6 1.2514 -7.9961 1.2404 24 1 -0.4850 0.8401 -0.0004 25 1 3.1237 -3.7310 0.8925 26 1 3.1251 -3.7318 -0.8875 27 1 4.8039 -6.9549 -0.3055 28 1 4.5172 -5.2030 -0.4361 29 1 5.2935 -7.9773 1.7958 30 1 6.0287 -7.6577 4.1490 31 1 5.8446 -5.3915 5.1554 32 1 4.9461 -3.5423 3.8004 33 1 3.0419 -8.4989 -0.0285 34 1 0.3015 -7.0774 -0.5822 35 1 0.6360 -8.8848 -0.7346 36 1 1.2673 -8.9745 1.7205 37 1 0.9333 -7.1673 1.8728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041789512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = 26.218120 kcal Electronic energy + Delta-G solvation = -20843.608303 eV Core-core repulsion = 17713.083111 eV Total energy + Delta-G solvation = -3130.525192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64900 -40.72088 -37.45103 -35.90400 -34.58560 -33.31877 -32.34411 -30.48696 -27.70907 -27.56394 -24.48444 -23.86050 -23.27275 -23.06491 -20.55617 -19.46832 -18.26267 -17.65105 -17.54899 -16.89416 -16.88571 -16.72478 -16.02423 -15.93922 -15.37091 -15.01163 -14.62230 -14.48244 -14.40399 -13.94190 -13.79856 -13.65257 -13.15065 -13.13373 -12.92234 -12.73363 -12.61573 -12.35699 -12.03945 -11.69894 -11.26007 -11.15636 -10.77603 -10.44367 -10.32444 -10.20503 -9.96852 -9.47880 -8.64373 -8.34681 -6.11608 0.14231 0.42236 1.25507 1.39389 1.42350 1.51442 1.59016 2.05896 2.27883 2.89637 2.98910 3.02812 3.27775 3.35643 3.62741 3.81277 4.01647 4.04626 4.11755 4.14574 4.20475 4.28583 4.32970 4.40019 4.54990 4.68477 4.70918 4.82574 4.83468 4.90013 5.11095 5.23048 5.30177 5.39940 5.41877 5.79610 5.84238 6.20027 6.22670 7.06441 7.12020 7.17212 8.75187 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.005361 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.389808 B = 5221.955806 C = 6699.876573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.153 6.153 10 C -0.132 4.132 11 C 0.535 3.465 12 O -0.547 6.547 13 N -0.575 5.575 14 C 0.157 3.843 15 C 0.083 3.917 16 C -0.149 4.149 17 C -0.077 4.077 18 C -0.167 4.167 19 C 0.073 3.927 20 N -0.512 5.512 21 C 0.081 3.919 22 C -0.210 4.210 23 C -0.190 4.190 24 H 0.271 0.729 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.147 0.853 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 -19.416 5.599 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.094 0.906 9 S 0.074 5.926 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.425 6.425 13 N -0.306 5.306 14 C 0.034 3.966 15 C -0.056 4.056 16 C -0.169 4.169 17 C -0.103 4.103 18 C -0.187 4.187 19 C -0.083 4.083 20 N -0.222 5.222 21 C -0.022 4.022 22 C -0.247 4.247 23 C -0.229 4.229 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.111 0.889 27 H 0.165 0.835 28 H 0.105 0.895 29 H 0.187 0.813 30 H 0.187 0.813 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.197 0.803 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.059 -18.920 5.035 24.103 hybrid contribution 1.496 1.118 0.666 1.983 sum 15.555 -17.802 5.701 24.318 Atomic orbital electron populations 1.70197 1.07910 1.28464 1.48317 1.26109 0.95973 1.03174 0.93772 0.84919 0.78490 0.76352 0.78263 1.18342 1.19618 1.19702 1.23145 0.95010 0.91997 1.58526 0.90648 1.85333 1.10809 0.99382 1.97032 1.23595 1.03348 0.94521 1.06865 1.20220 0.85970 0.86623 0.74765 1.90497 1.17271 1.84860 1.49890 1.47281 1.06351 1.04893 1.72094 1.20754 0.78857 1.05580 0.91360 1.21862 0.96495 0.89424 0.97774 1.22279 0.98745 1.00255 0.95584 1.22037 0.95521 0.97818 0.94890 1.22460 1.00054 0.93879 1.02302 1.23013 0.94960 1.00708 0.89628 1.67356 1.15578 1.25745 1.13565 1.22130 0.92419 0.83604 1.04028 1.23940 0.98272 1.04682 0.97808 1.23164 1.04721 1.02539 0.92469 0.92010 0.85941 0.88871 0.83506 0.89516 0.81330 0.81300 0.82303 0.83016 0.80314 0.87867 0.86610 0.85482 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.94 13.22 21.65 0.29 -57.65 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 45.55 29.55 68.60 2.03 47.57 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.54 -32.69 9.50 67.95 0.65 -32.05 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -9.08 20.58 -56.49 -1.16 -10.24 16 10 C -0.13 -6.03 4.70 71.24 0.33 -5.70 16 11 C 0.54 21.97 7.45 87.66 0.65 22.62 16 12 O -0.55 -26.30 11.76 -3.05 -0.04 -26.34 16 13 N -0.58 -16.41 2.82 -802.15 -2.27 -18.67 16 14 C 0.16 3.35 5.53 85.63 0.47 3.83 16 15 C 0.08 1.92 6.36 42.55 0.27 2.19 16 16 C -0.15 -2.27 9.72 22.36 0.22 -2.06 16 17 C -0.08 -1.06 10.18 22.47 0.23 -0.83 16 18 C -0.17 -2.89 10.11 22.36 0.23 -2.66 16 19 C 0.07 1.85 11.18 84.67 0.95 2.80 16 20 N -0.51 -15.33 8.08 -183.89 -1.49 -16.81 16 21 C 0.08 1.83 6.62 44.99 0.30 2.12 16 22 C -0.21 -5.76 9.64 30.60 0.29 -5.46 16 23 C -0.19 -4.90 9.90 30.60 0.30 -4.60 16 24 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.12 5.52 5.71 -2.40 -0.01 5.51 16 26 H 0.09 4.00 7.55 -2.39 -0.02 3.98 16 27 H 0.15 1.58 7.94 -2.39 -0.02 1.57 16 28 H 0.09 2.11 6.60 -2.39 -0.02 2.09 16 29 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 33 H 0.18 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.10 3.95 4.96 -26.01 -0.13 3.82 16 35 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.05 1.75 7.83 -2.39 -0.02 1.73 16 Total: -1.00 -84.65 327.00 3.68 -80.97 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.96 Total: 19.65 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 5.36 Total: -18.48 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.46 Total: -93.14 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.34 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.16 Total: -10.24 kcal Total: -84.65 3.68 -80.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041789512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.188 kcal (2) G-P(sol) polarization free energy of solvation -84.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds