Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64934 * 359.69159 * 13 11 10 15 15 C 1.54697 * 104.94502 * 204.07254 * 14 13 11 16 16 C 1.55159 * 101.67358 * 323.28283 * 15 14 13 17 17 C 1.47026 * 125.64650 * 180.02562 * 13 11 10 18 18 H 1.08997 * 109.88040 * 59.33608 * 17 13 11 19 19 C 1.50696 * 109.88280 * 298.31982 * 17 13 11 20 20 C 1.38648 * 120.79044 * 321.17577 * 19 17 13 21 21 C 1.38211 * 119.16166 * 179.75090 * 20 19 17 22 22 N 1.31872 * 120.76062 * 0.53405 * 21 20 19 23 23 C 1.31866 * 121.72841 * 359.74170 * 22 21 20 24 24 C 1.38209 * 120.76437 * 359.97422 * 23 22 21 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 27 27 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 28 28 H 1.08996 * 110.37213 * 323.00899 * 14 13 11 29 29 H 1.09002 * 110.36706 * 85.32925 * 14 13 11 30 30 H 1.08993 * 111.10393 * 205.10990 * 15 14 13 31 31 H 1.08994 * 110.84697 * 81.33415 * 15 14 13 32 32 H 1.09004 * 110.72072 * 276.96581 * 16 15 14 33 33 H 1.09001 * 110.86916 * 153.77158 * 16 15 14 34 34 H 1.08002 * 120.41789 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.61529 * 180.29182 * 21 20 19 36 36 H 1.07995 * 119.62159 * 180.02562 * 23 22 21 37 37 H 1.08000 * 120.41745 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2251 -5.7195 0.0076 15 6 6.1403 -6.8089 0.6147 16 6 7.5230 -6.4201 0.0278 17 6 7.4650 -4.8782 -0.0010 18 1 7.9596 -4.4697 0.8802 19 6 8.1345 -4.3637 -1.2491 20 6 7.4748 -4.3841 -2.4684 21 6 8.1188 -3.8989 -3.5909 22 7 9.3491 -3.4306 -3.5130 23 6 10.0089 -3.4009 -2.3716 24 6 9.4271 -3.8638 -1.2065 25 1 -0.4850 0.8401 0.0004 26 1 3.6440 -3.4315 0.8904 27 1 3.6433 -3.4318 -0.8896 28 1 4.3395 -5.5788 0.6273 29 1 4.9387 -5.9910 -1.0085 30 1 5.8405 -7.8029 0.2829 31 1 6.1467 -6.7479 1.7029 32 1 7.6411 -6.8208 -0.9790 33 1 8.3300 -6.7635 0.6751 34 1 6.4686 -4.7702 -2.5393 35 1 7.6100 -3.9070 -4.5434 36 1 11.0151 -3.0096 -2.3468 37 1 9.9724 -3.8364 -0.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042038743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = 3.177478 kcal Electronic energy + Delta-G solvation = -20728.383847 eV Core-core repulsion = 17596.859538 eV Total energy + Delta-G solvation = -3131.524309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79084 -39.36908 -37.34408 -33.24402 -32.46091 -31.91088 -31.21398 -29.36566 -28.32539 -25.64108 -24.19691 -23.50461 -22.49372 -21.30937 -19.34419 -17.78517 -17.26799 -16.94332 -16.06323 -15.76878 -15.62609 -15.06179 -14.91943 -14.46435 -14.02924 -13.95588 -13.69728 -13.46814 -13.41057 -13.00919 -12.82645 -12.49880 -11.98991 -11.91852 -11.66526 -11.52810 -11.27391 -11.09215 -11.02222 -10.63455 -9.89841 -9.78182 -9.53817 -9.41865 -9.16582 -9.02303 -8.70841 -8.52069 -6.94630 -6.31006 -4.02987 1.12286 1.18584 2.63182 2.88739 3.14548 3.31699 3.49513 3.56274 3.78023 4.16341 4.28850 4.31974 4.41705 4.45510 4.67532 4.72774 4.77498 4.99575 5.08217 5.09150 5.09551 5.17279 5.24086 5.41426 5.45661 5.53045 5.56470 5.59382 5.72967 5.75583 5.84669 5.94503 5.96434 6.14459 6.36556 6.66255 7.50014 7.92042 7.94224 8.38297 8.39239 9.15298 10.78199 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004517 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.955062 B = 6197.764606 C = 7139.015043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.236 1.236 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.508 6.508 13 N -0.620 5.620 14 C 0.097 3.903 15 C -0.131 4.131 16 C -0.121 4.121 17 C 0.176 3.824 18 H 0.087 0.913 19 C -0.037 4.037 20 C -0.154 4.154 21 C 0.099 3.901 22 N -0.489 5.489 23 C 0.097 3.903 24 C -0.161 4.161 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.122 -16.376 -0.919 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.160 1.160 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.382 6.382 13 N -0.357 5.357 14 C -0.026 4.026 15 C -0.170 4.170 16 C -0.159 4.159 17 C 0.072 3.928 18 H 0.105 0.895 19 C -0.047 4.047 20 C -0.174 4.174 21 C -0.057 4.057 22 N -0.198 5.198 23 C -0.060 4.060 24 C -0.181 4.181 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.442 -14.461 -1.676 22.719 hybrid contribution -1.354 -0.561 0.815 1.677 sum 16.088 -15.022 -0.861 22.028 Atomic orbital electron populations 1.69937 1.05899 1.27786 1.48018 1.24695 0.94428 0.98912 0.93128 0.86753 0.81926 0.83342 0.79960 1.19183 1.15956 1.19874 1.22298 0.88190 0.97531 1.58883 0.89392 1.84830 1.09360 0.99879 1.97415 1.23259 0.93521 1.04347 1.05623 1.20032 0.90586 0.80630 0.75262 1.90724 1.58739 1.41142 1.47566 1.48590 1.05801 1.05597 1.75748 1.22331 0.94934 0.84000 1.01329 1.22756 0.94277 0.98691 1.01228 1.22691 0.98426 0.92303 1.02511 1.20432 0.82665 0.94830 0.94870 0.89514 1.20459 0.93944 0.95157 0.95104 1.21898 1.01028 1.01336 0.93098 1.22710 0.90766 0.93766 0.98497 1.67641 1.08940 1.14648 1.28559 1.22680 0.99670 0.95748 0.87865 1.21933 0.95685 1.00351 1.00144 0.91914 0.88577 0.88595 0.89854 0.91226 0.89492 0.90247 0.90234 0.89621 0.85285 0.82888 0.82913 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.27 5.17 36.01 0.19 -2.09 16 11 C 0.55 9.85 7.53 -10.99 -0.08 9.76 16 12 O -0.51 -11.13 15.70 5.56 0.09 -11.05 16 13 N -0.62 -8.09 2.41 -164.46 -0.40 -8.49 16 14 C 0.10 0.90 6.68 -2.64 -0.02 0.88 16 15 C -0.13 -0.86 7.07 -24.70 -0.17 -1.04 16 16 C -0.12 -0.87 6.47 -24.90 -0.16 -1.03 16 17 C 0.18 1.95 3.09 -68.10 -0.21 1.73 16 18 H 0.09 1.00 8.06 -51.93 -0.42 0.58 16 19 C -0.04 -0.46 4.10 -104.32 -0.43 -0.89 16 20 C -0.15 -1.95 9.28 -39.44 -0.37 -2.32 16 21 C 0.10 1.28 11.18 -17.54 -0.20 1.09 16 22 N -0.49 -6.79 10.36 -13.25 -0.14 -6.93 16 23 C 0.10 1.17 11.18 -17.55 -0.20 0.98 16 24 C -0.16 -1.87 9.79 -39.44 -0.39 -2.26 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.10 1.74 7.84 -51.91 -0.41 1.33 16 27 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 28 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.56 7.82 -51.93 -0.41 0.15 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.13 1.53 7.78 -52.49 -0.41 1.12 16 35 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -35.29 326.97 -8.26 -43.55 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.99 Total: -0.76 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.82 Total: -7.12 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.24 Total: -41.14 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.29 -8.26 -43.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042038743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.726 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds