Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64934 * 359.69159 * 13 11 10 15 15 C 1.54697 * 104.94502 * 204.07254 * 14 13 11 16 16 C 1.55159 * 101.67358 * 323.28283 * 15 14 13 17 17 C 1.47026 * 125.64650 * 180.02562 * 13 11 10 18 18 H 1.08997 * 109.88040 * 59.33608 * 17 13 11 19 19 C 1.50696 * 109.88280 * 298.31982 * 17 13 11 20 20 C 1.38648 * 120.79044 * 321.17577 * 19 17 13 21 21 C 1.38211 * 119.16166 * 179.75090 * 20 19 17 22 22 N 1.31872 * 120.76062 * 0.53405 * 21 20 19 23 23 C 1.31866 * 121.72841 * 359.74170 * 22 21 20 24 24 C 1.38209 * 120.76437 * 359.97422 * 23 22 21 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 27 27 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 28 28 H 1.08996 * 110.37213 * 323.00899 * 14 13 11 29 29 H 1.09002 * 110.36706 * 85.32925 * 14 13 11 30 30 H 1.08993 * 111.10393 * 205.10990 * 15 14 13 31 31 H 1.08994 * 110.84697 * 81.33415 * 15 14 13 32 32 H 1.09004 * 110.72072 * 276.96581 * 16 15 14 33 33 H 1.09001 * 110.86916 * 153.77158 * 16 15 14 34 34 H 1.08002 * 120.41789 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.61529 * 180.29182 * 21 20 19 36 36 H 1.07995 * 119.62159 * 180.02562 * 23 22 21 37 37 H 1.08000 * 120.41745 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2251 -5.7195 0.0076 15 6 6.1403 -6.8089 0.6147 16 6 7.5230 -6.4201 0.0278 17 6 7.4650 -4.8782 -0.0010 18 1 7.9596 -4.4697 0.8802 19 6 8.1345 -4.3637 -1.2491 20 6 7.4748 -4.3841 -2.4684 21 6 8.1188 -3.8989 -3.5909 22 7 9.3491 -3.4306 -3.5130 23 6 10.0089 -3.4009 -2.3716 24 6 9.4271 -3.8638 -1.2065 25 1 -0.4850 0.8401 0.0004 26 1 3.6440 -3.4315 0.8904 27 1 3.6433 -3.4318 -0.8896 28 1 4.3395 -5.5788 0.6273 29 1 4.9387 -5.9910 -1.0085 30 1 5.8405 -7.8029 0.2829 31 1 6.1467 -6.7479 1.7029 32 1 7.6411 -6.8208 -0.9790 33 1 8.3300 -6.7635 0.6751 34 1 6.4686 -4.7702 -2.5393 35 1 7.6100 -3.9070 -4.5434 36 1 11.0151 -3.0096 -2.3468 37 1 9.9724 -3.8364 -0.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042038743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -19.382198 kcal Electronic energy + Delta-G solvation = -20729.362108 eV Core-core repulsion = 17596.859538 eV Total energy + Delta-G solvation = -3132.502570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77349 -40.45209 -38.48401 -34.69773 -34.20222 -32.91464 -32.13085 -30.63294 -29.27524 -27.87421 -25.11531 -24.43209 -23.42716 -22.07271 -20.58703 -19.63198 -18.28066 -18.17755 -17.20470 -17.06274 -16.74739 -16.53485 -16.34756 -15.85344 -15.38502 -14.98380 -14.92191 -14.56684 -14.33318 -14.27037 -14.08178 -13.67080 -13.38211 -13.18297 -13.03947 -12.74248 -12.62768 -12.46779 -12.14489 -11.89778 -11.67050 -11.19704 -11.08463 -10.59974 -10.56046 -10.41678 -10.08949 -9.78307 -9.03512 -8.54106 -6.25146 0.19986 0.24833 0.93879 1.28223 1.42736 1.49529 1.50531 2.01769 2.22259 2.65553 2.84333 2.85096 3.38204 3.52151 3.57571 3.70271 3.82883 3.90505 4.09420 4.15594 4.20162 4.23434 4.33525 4.37768 4.53092 4.67520 4.76309 4.81083 4.89836 4.92804 5.04544 5.09421 5.20201 5.34032 5.42690 5.68491 5.76466 6.08820 6.32858 6.91353 7.00819 7.04384 8.58336 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004517 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.955062 B = 6197.764606 C = 7139.015043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.050 3.950 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.241 1.241 6 H -0.258 1.258 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.101 4.101 11 C 0.548 3.452 12 O -0.556 6.556 13 N -0.609 5.609 14 C 0.083 3.917 15 C -0.119 4.119 16 C -0.110 4.110 17 C 0.170 3.830 18 H 0.083 0.917 19 C -0.048 4.048 20 C -0.165 4.165 21 C 0.084 3.916 22 N -0.515 5.515 23 C 0.088 3.912 24 C -0.166 4.166 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.515 -18.022 -0.433 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.156 4.156 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.165 1.165 6 H -0.182 1.182 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.252 4.252 11 C 0.336 3.664 12 O -0.434 6.434 13 N -0.344 5.344 14 C -0.038 4.038 15 C -0.157 4.157 16 C -0.148 4.148 17 C 0.067 3.933 18 H 0.101 0.899 19 C -0.057 4.057 20 C -0.185 4.185 21 C -0.072 4.072 22 N -0.225 5.225 23 C -0.069 4.069 24 C -0.187 4.187 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.185 0.815 36 H 0.195 0.805 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 18.829 -16.173 -1.191 24.850 hybrid contribution -1.752 -0.228 0.669 1.889 sum 17.077 -16.401 -0.521 23.683 Atomic orbital electron populations 1.70008 1.07200 1.29025 1.49068 1.25498 0.95213 1.02029 0.92865 0.85916 0.80612 0.79907 0.80244 1.18606 1.16466 1.18198 1.22427 0.90043 0.96722 1.58342 0.91843 1.84767 1.06681 1.06031 1.97565 1.23207 0.95542 0.99511 1.06963 1.19642 0.89355 0.81908 0.75490 1.90702 1.59281 1.43039 1.50351 1.48511 1.07676 1.04987 1.73192 1.22716 0.95278 0.83200 1.02643 1.22764 0.92789 0.98782 1.01362 1.22707 0.99644 0.88870 1.03555 1.20720 0.80914 0.97574 0.94100 0.89882 1.20706 0.94437 0.95117 0.95407 1.22007 1.01316 1.01815 0.93374 1.23019 0.90895 0.93903 0.99416 1.67662 1.09542 1.15579 1.29672 1.23166 1.00700 0.95405 0.87616 1.22242 0.95736 0.99678 1.00997 0.91312 0.87123 0.87325 0.89760 0.89863 0.86738 0.89748 0.89682 0.87305 0.84850 0.81547 0.80478 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 2 C 0.05 2.92 5.50 84.86 0.47 3.39 16 3 Si 0.91 45.38 27.74 68.60 1.90 47.29 16 4 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.24 -12.10 6.74 99.48 0.67 -11.43 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -30.78 10.04 67.96 0.68 -30.10 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 10 C -0.10 -3.88 5.17 71.24 0.37 -3.52 16 11 C 0.55 19.32 7.53 87.66 0.66 19.98 16 12 O -0.56 -24.33 15.70 -3.03 -0.05 -24.37 16 13 N -0.61 -14.77 2.41 -792.62 -1.91 -16.68 16 14 C 0.08 1.31 6.68 86.78 0.58 1.89 16 15 C -0.12 -1.08 7.07 31.91 0.23 -0.86 16 16 C -0.11 -1.17 6.47 31.78 0.21 -0.96 16 17 C 0.17 3.38 3.09 44.59 0.14 3.52 16 18 H 0.08 1.74 8.06 -2.39 -0.02 1.72 16 19 C -0.05 -1.11 4.10 -19.67 -0.08 -1.19 16 20 C -0.17 -4.05 9.28 22.36 0.21 -3.84 16 21 C 0.08 2.14 11.18 84.68 0.95 3.08 16 22 N -0.51 -14.05 10.36 -195.84 -2.03 -16.08 16 23 C 0.09 2.02 11.18 84.68 0.95 2.96 16 24 C -0.17 -3.62 9.79 22.36 0.22 -3.40 16 25 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.11 3.90 7.84 -2.39 -0.02 3.88 16 27 H 0.11 3.86 8.14 -2.39 -0.02 3.85 16 28 H 0.08 1.34 7.48 -2.39 -0.02 1.33 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.87 7.82 -2.38 -0.02 0.85 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.13 3.01 7.78 -2.91 -0.02 2.99 16 35 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -77.59 326.97 3.76 -73.83 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.03 Total: 10.54 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.57 Total: -9.06 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.64 Total: -88.11 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -77.59 3.76 -73.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042038743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.449 kcal (2) G-P(sol) polarization free energy of solvation -77.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds