Wall clock time and date at job start Tue Mar 31 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39775 * 120.07514 * 213.99274 * 3 2 1 5 5 C 1.37692 * 119.92098 * 180.02562 * 4 3 2 6 6 C 1.39119 * 120.07822 * 0.02562 * 5 4 3 7 7 N 1.39452 * 119.92469 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00354 * 146.25615 * 7 6 5 9 9 O 1.21549 * 120.00214 * 354.66077 * 8 7 6 10 10 C 1.47854 * 120.00114 * 174.93241 * 8 7 6 11 11 C 1.39936 * 120.02544 * 359.72200 * 10 8 7 12 12 C 1.38322 * 120.35651 * 179.76190 * 11 10 8 13 13 C 1.37758 * 120.41204 * 0.52279 * 12 11 10 14 14 C 1.40753 * 120.04163 * 359.73682 * 13 12 11 15 15 C 1.41442 * 120.17445 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00080 * 331.82444 * 15 14 13 17 17 C 1.39934 * 119.99960 * 151.82028 * 15 14 13 18 18 N 1.30832 * 120.00076 * 348.93819 * 17 15 14 19 19 Si 1.86798 * 120.00124 * 168.92881 * 17 15 14 20 20 H 1.48498 * 109.46800 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47026 * 120.00455 * 19 17 15 22 22 H 1.48495 * 109.47626 * 240.00412 * 19 17 15 23 23 C 1.39010 * 120.02567 * 180.02562 * 10 8 7 24 24 C 1.39129 * 120.15567 * 0.25087 * 6 5 4 25 25 C 1.37687 * 120.08073 * 359.49357 * 24 6 5 26 26 H 1.07999 * 120.03869 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.95715 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99653 * 326.25797 * 7 6 5 29 29 H 1.08004 * 119.82399 * 0.02562 * 11 10 8 30 30 H 1.07997 * 119.79559 * 180.25847 * 12 11 10 31 31 H 1.07995 * 119.97516 * 179.72016 * 13 12 11 32 32 H 0.96999 * 120.00321 * 179.97438 * 18 17 15 33 33 H 1.08001 * 120.20534 * 359.95919 * 23 10 8 34 34 H 1.08003 * 119.96309 * 179.72032 * 24 6 5 35 35 H 1.07996 * 120.04170 * 180.23205 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2681 1.0038 0.6763 5 6 4.6450 1.0017 0.6737 6 6 5.3394 0.0029 -0.0013 7 7 6.7340 0.0041 -0.0022 8 6 7.4089 -1.1624 -0.0082 9 8 6.8062 -2.2138 0.0851 10 6 8.8830 -1.1631 -0.1223 11 6 9.5775 0.0470 -0.2298 12 6 10.9570 0.0547 -0.3320 13 6 11.6622 -1.1287 -0.3398 14 6 10.9806 -2.3559 -0.2379 15 6 11.7019 -3.5725 -0.2451 16 1 12.6496 -3.6354 -0.7593 17 6 11.1877 -4.6947 0.4140 18 7 10.1593 -4.5699 1.2131 19 14 11.9694 -6.3710 0.1528 20 1 13.1092 -6.2440 -0.7904 21 1 12.4591 -6.8968 1.4525 22 1 10.9617 -7.3049 -0.4107 23 6 9.5797 -2.3660 -0.1291 24 6 4.6459 -0.9940 -0.6803 25 6 3.2691 -1.0011 -0.6776 26 1 2.7296 1.7797 1.2001 27 1 5.1865 1.7767 1.1957 28 1 7.2182 0.8446 0.0016 29 1 9.0339 0.9803 -0.2289 30 1 11.4841 0.9940 -0.4104 31 1 12.7387 -1.1147 -0.4244 32 1 9.8026 -5.3478 1.6697 33 1 9.0475 -3.3025 -0.0505 34 1 5.1882 -1.7653 -1.2070 35 1 2.7314 -1.7773 -1.2017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042198097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:08 Heat of formation + Delta-G solvation = 37.722222 kcal Electronic energy + Delta-G solvation = -20932.262199 eV Core-core repulsion = 17666.791911 eV Total energy + Delta-G solvation = -3265.470288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47409 -38.77438 -37.25147 -36.44312 -34.58950 -33.78199 -31.23496 -30.91104 -29.63449 -29.37737 -25.50276 -24.32031 -23.05853 -22.16846 -21.07691 -19.76981 -19.01700 -18.09582 -17.50266 -16.19282 -15.54574 -15.23119 -14.82238 -14.75508 -14.35292 -14.21125 -14.02257 -13.70258 -13.56802 -13.31654 -12.86085 -12.83776 -12.66743 -12.47243 -12.25641 -11.76363 -11.34367 -11.26958 -11.19414 -10.85102 -10.59957 -10.27020 -10.15410 -9.83188 -9.37573 -9.35487 -9.10916 -8.17407 -7.78082 -7.62117 -6.85142 -4.54299 0.64197 1.24236 1.96520 2.57090 2.68930 2.84173 3.03238 3.05185 3.07888 3.25024 3.57613 3.83402 3.84683 3.86518 4.53039 4.69694 4.73453 5.12575 5.21875 5.39542 5.45246 5.53208 5.81966 5.90093 5.93592 6.10518 6.19602 6.24180 6.39404 6.57688 6.79749 6.86824 6.90889 7.10465 7.22729 7.39249 7.47678 7.55734 7.71415 7.85791 8.04158 8.37983 8.53436 8.69558 8.71838 10.08586 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.003380 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.702557 B = 8282.717986 C = 9331.716194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.265 3.735 3 C -0.067 4.067 4 C -0.046 4.046 5 C -0.159 4.159 6 C 0.200 3.800 7 N -0.679 5.679 8 C 0.566 3.434 9 O -0.518 6.518 10 C -0.134 4.134 11 C -0.214 4.214 12 C -0.099 4.099 13 C -0.204 4.204 14 C 0.097 3.903 15 C -0.457 4.457 16 H 0.082 0.918 17 C 0.070 3.930 18 N -0.791 5.791 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.081 4.081 24 C -0.129 4.129 25 C -0.045 4.045 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.414 0.586 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.284 0.716 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 8.539 -1.700 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.050 4.050 3 C -0.072 4.072 4 C -0.067 4.067 5 C -0.179 4.179 6 C 0.102 3.898 7 N -0.324 5.324 8 C 0.358 3.642 9 O -0.393 6.393 10 C -0.138 4.138 11 C -0.234 4.234 12 C -0.117 4.117 13 C -0.224 4.224 14 C 0.094 3.906 15 C -0.487 4.487 16 H 0.100 0.900 17 C -0.148 4.148 18 N -0.415 5.415 19 Si 0.738 3.262 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.102 4.102 24 C -0.150 4.150 25 C -0.066 4.066 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.252 0.748 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.186 7.598 -1.481 11.267 hybrid contribution 1.059 -0.261 0.125 1.097 sum -7.127 7.337 -1.356 10.319 Atomic orbital electron populations 1.81236 1.12169 1.08376 1.09291 1.25743 0.92647 0.93358 0.93232 1.15957 0.84142 1.00187 1.06919 1.20864 0.93380 0.96365 0.96104 1.20831 0.93847 1.01249 1.02015 1.18083 0.83672 0.95153 0.92879 1.43739 1.03847 1.10965 1.73858 1.19074 0.88744 0.82197 0.74150 1.90738 1.70185 1.31062 1.47331 1.19343 0.89211 0.95700 1.09525 1.20350 0.94403 0.94568 1.14124 1.20455 0.93589 0.96814 1.00822 1.21192 0.98085 0.92320 1.10784 1.17634 0.91360 0.92586 0.89026 1.19638 1.05871 0.93886 1.29280 0.89997 1.25964 0.94372 1.01351 0.93097 1.69745 1.19775 1.32497 1.19529 0.86165 0.79980 0.80901 0.79167 1.18390 1.19869 1.19576 1.21738 0.94109 0.96212 0.98093 1.21189 0.93485 1.00189 1.00117 1.21026 0.93607 0.96021 0.95952 0.84881 0.84629 0.74820 0.89103 0.88646 0.88391 0.90449 0.84394 0.83574 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.02 18.54 41.84 0.78 -5.24 16 2 C 0.26 3.12 15.33 -22.47 -0.34 2.78 16 3 C -0.07 -0.71 5.74 -106.82 -0.61 -1.33 16 4 C -0.05 -0.42 9.75 -39.21 -0.38 -0.80 16 5 C -0.16 -1.57 9.94 -39.45 -0.39 -1.96 16 6 C 0.20 2.58 6.26 -83.73 -0.52 2.05 16 7 N -0.68 -9.68 5.26 -10.70 -0.06 -9.73 16 8 C 0.57 10.86 7.49 -12.33 -0.09 10.77 16 9 O -0.52 -11.38 14.05 5.32 0.07 -11.31 16 10 C -0.13 -2.86 5.87 -105.04 -0.62 -3.47 16 11 C -0.21 -4.01 9.54 -38.91 -0.37 -4.38 16 12 C -0.10 -1.91 10.01 -39.73 -0.40 -2.31 16 13 C -0.20 -4.50 9.78 -38.81 -0.38 -4.87 16 14 C 0.10 2.39 5.55 -106.87 -0.59 1.80 16 15 C -0.46 -11.39 9.06 -37.73 -0.34 -11.73 16 16 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 17 C 0.07 1.70 5.25 -17.34 -0.09 1.60 16 18 N -0.79 -19.96 10.82 55.55 0.60 -19.36 16 19 Si 0.91 18.02 29.57 -169.99 -5.03 12.99 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.08 -2.01 8.21 -38.44 -0.32 -2.32 16 24 C -0.13 -1.72 8.62 -39.45 -0.34 -2.06 16 25 C -0.04 -0.50 9.75 -39.20 -0.38 -0.88 16 26 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.41 4.76 6.85 -40.82 -0.28 4.48 16 29 H 0.09 1.33 6.40 -52.48 -0.34 1.00 16 30 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 33 H 0.14 3.70 5.76 -52.49 -0.30 3.40 16 34 H 0.15 2.21 6.45 -52.48 -0.34 1.88 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -28.35 317.62 -7.94 -36.29 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -2.92 Total: 8.70 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -6.18 Total: -17.13 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 1.32 Total: -34.33 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.35 -7.94 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042198097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.016 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds