Wall clock time and date at job start Tue Mar 31 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39775 * 120.07514 * 213.99274 * 3 2 1 5 5 C 1.37692 * 119.92098 * 180.02562 * 4 3 2 6 6 C 1.39119 * 120.07822 * 0.02562 * 5 4 3 7 7 N 1.39452 * 119.92469 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00354 * 146.25615 * 7 6 5 9 9 O 1.21549 * 120.00214 * 354.66077 * 8 7 6 10 10 C 1.47854 * 120.00114 * 174.93241 * 8 7 6 11 11 C 1.39936 * 120.02544 * 359.72200 * 10 8 7 12 12 C 1.38322 * 120.35651 * 179.76190 * 11 10 8 13 13 C 1.37758 * 120.41204 * 0.52279 * 12 11 10 14 14 C 1.40753 * 120.04163 * 359.73682 * 13 12 11 15 15 C 1.41442 * 120.17445 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00080 * 331.82444 * 15 14 13 17 17 C 1.39934 * 119.99960 * 151.82028 * 15 14 13 18 18 N 1.30832 * 120.00076 * 348.93819 * 17 15 14 19 19 Si 1.86798 * 120.00124 * 168.92881 * 17 15 14 20 20 H 1.48498 * 109.46800 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47026 * 120.00455 * 19 17 15 22 22 H 1.48495 * 109.47626 * 240.00412 * 19 17 15 23 23 C 1.39010 * 120.02567 * 180.02562 * 10 8 7 24 24 C 1.39129 * 120.15567 * 0.25087 * 6 5 4 25 25 C 1.37687 * 120.08073 * 359.49357 * 24 6 5 26 26 H 1.07999 * 120.03869 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.95715 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99653 * 326.25797 * 7 6 5 29 29 H 1.08004 * 119.82399 * 0.02562 * 11 10 8 30 30 H 1.07997 * 119.79559 * 180.25847 * 12 11 10 31 31 H 1.07995 * 119.97516 * 179.72016 * 13 12 11 32 32 H 0.96999 * 120.00321 * 179.97438 * 18 17 15 33 33 H 1.08001 * 120.20534 * 359.95919 * 23 10 8 34 34 H 1.08003 * 119.96309 * 179.72032 * 24 6 5 35 35 H 1.07996 * 120.04170 * 180.23205 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2681 1.0038 0.6763 5 6 4.6450 1.0017 0.6737 6 6 5.3394 0.0029 -0.0013 7 7 6.7340 0.0041 -0.0022 8 6 7.4089 -1.1624 -0.0082 9 8 6.8062 -2.2138 0.0851 10 6 8.8830 -1.1631 -0.1223 11 6 9.5775 0.0470 -0.2298 12 6 10.9570 0.0547 -0.3320 13 6 11.6622 -1.1287 -0.3398 14 6 10.9806 -2.3559 -0.2379 15 6 11.7019 -3.5725 -0.2451 16 1 12.6496 -3.6354 -0.7593 17 6 11.1877 -4.6947 0.4140 18 7 10.1593 -4.5699 1.2131 19 14 11.9694 -6.3710 0.1528 20 1 13.1092 -6.2440 -0.7904 21 1 12.4591 -6.8968 1.4525 22 1 10.9617 -7.3049 -0.4107 23 6 9.5797 -2.3660 -0.1291 24 6 4.6459 -0.9940 -0.6803 25 6 3.2691 -1.0011 -0.6776 26 1 2.7296 1.7797 1.2001 27 1 5.1865 1.7767 1.1957 28 1 7.2182 0.8446 0.0016 29 1 9.0339 0.9803 -0.2289 30 1 11.4841 0.9940 -0.4104 31 1 12.7387 -1.1147 -0.4244 32 1 9.8026 -5.3478 1.6697 33 1 9.0475 -3.3025 -0.0505 34 1 5.1882 -1.7653 -1.2070 35 1 2.7314 -1.7773 -1.2017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042198097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:07 Heat of formation + Delta-G solvation = 22.652302 kcal Electronic energy + Delta-G solvation = -20932.915680 eV Core-core repulsion = 17666.791911 eV Total energy + Delta-G solvation = -3266.123769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69900 -39.97616 -38.81089 -37.53251 -35.89416 -35.44610 -32.39607 -32.09649 -31.29485 -30.64728 -27.24108 -25.59131 -23.97164 -23.49613 -22.75010 -21.21345 -19.93250 -19.60375 -18.80235 -17.71236 -17.01902 -16.58869 -16.37477 -15.82761 -15.74406 -15.35921 -15.07066 -15.01350 -14.76372 -14.48903 -14.35768 -14.26406 -13.88274 -13.53729 -13.44428 -13.21497 -12.92542 -12.79957 -12.51812 -12.24769 -12.18116 -11.87212 -11.50021 -11.39635 -11.11669 -10.82882 -10.00882 -9.55751 -9.34457 -9.13664 -8.60439 -6.39052 -0.33285 0.37740 0.39866 1.01899 1.38639 1.46583 1.53392 1.62104 1.79423 2.02797 2.16095 2.21359 2.79185 2.89692 2.92826 3.69143 3.77924 3.93991 3.99947 4.27110 4.41012 4.49586 4.53482 4.61120 4.89621 4.97145 5.06277 5.09637 5.17620 5.28957 5.33066 5.35613 5.40876 5.52345 5.84153 5.88686 5.92015 6.07466 6.29388 6.43314 6.45526 6.63144 6.90716 6.94864 7.15229 8.34925 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.003380 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.702557 B = 8282.717986 C = 9331.716194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.286 3.714 3 C -0.064 4.064 4 C -0.032 4.032 5 C -0.140 4.140 6 C 0.175 3.825 7 N -0.657 5.657 8 C 0.566 3.434 9 O -0.557 6.557 10 C -0.143 4.143 11 C -0.187 4.187 12 C -0.099 4.099 13 C -0.209 4.209 14 C 0.063 3.937 15 C -0.496 4.496 16 H 0.081 0.919 17 C 0.028 3.972 18 N -0.832 5.832 19 Si 0.982 3.018 20 H -0.253 1.253 21 H -0.267 1.267 22 H -0.271 1.271 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.044 4.044 26 H 0.168 0.832 27 H 0.170 0.830 28 H 0.429 0.571 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.284 0.716 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 11.930 -1.363 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.028 4.028 3 C -0.068 4.068 4 C -0.053 4.053 5 C -0.160 4.160 6 C 0.078 3.922 7 N -0.303 5.303 8 C 0.357 3.643 9 O -0.435 6.435 10 C -0.146 4.146 11 C -0.207 4.207 12 C -0.117 4.117 13 C -0.228 4.228 14 C 0.060 3.940 15 C -0.526 4.526 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.459 5.459 19 Si 0.803 3.197 20 H -0.176 1.176 21 H -0.192 1.192 22 H -0.196 1.196 23 C -0.141 4.141 24 C -0.170 4.170 25 C -0.065 4.065 26 H 0.186 0.814 27 H 0.188 0.812 28 H 0.270 0.730 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.651 11.054 -1.155 14.084 hybrid contribution 1.066 -1.040 -0.018 1.490 sum -7.584 10.014 -1.173 12.616 Atomic orbital electron populations 1.81271 1.13233 1.09568 1.10517 1.25770 0.92556 0.92274 0.92158 1.16021 0.83465 1.00434 1.06899 1.21248 0.93174 0.96117 0.94750 1.21123 0.94036 1.00428 1.00434 1.18315 0.82802 0.96511 0.94539 1.43322 1.04590 1.09807 1.72627 1.18821 0.88157 0.83114 0.74172 1.90725 1.70629 1.32924 1.49257 1.19647 0.90738 0.95665 1.08546 1.20943 0.94582 0.95442 1.09710 1.20960 0.94058 0.97555 0.99148 1.21494 0.98916 0.92538 1.09891 1.17967 0.91786 0.93900 0.90305 1.19870 1.06513 0.95244 1.30988 0.90048 1.26778 0.94694 1.04720 0.92408 1.69857 1.21624 1.33272 1.21141 0.85147 0.79044 0.76251 0.79235 1.17636 1.19166 1.19596 1.21525 0.94430 0.96459 1.01644 1.21053 0.94349 1.00287 1.01262 1.21066 0.92811 0.96601 0.96018 0.81425 0.81209 0.72997 0.83802 0.84131 0.87412 0.90499 0.87913 0.86440 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.24 18.54 19.00 0.35 -11.88 16 2 C 0.29 6.11 15.33 88.33 1.35 7.47 16 3 C -0.06 -1.17 5.74 -21.29 -0.12 -1.30 16 4 C -0.03 -0.45 9.75 22.51 0.22 -0.23 16 5 C -0.14 -2.15 9.94 22.35 0.22 -1.93 16 6 C 0.17 4.13 6.26 38.36 0.24 4.37 16 7 N -0.66 -17.27 5.26 -306.05 -1.61 -18.88 16 8 C 0.57 21.80 7.49 86.79 0.65 22.45 16 9 O -0.56 -25.75 14.05 -3.87 -0.05 -25.80 16 10 C -0.14 -6.06 5.87 -20.14 -0.12 -6.18 16 11 C -0.19 -6.39 9.54 22.70 0.22 -6.18 16 12 C -0.10 -3.53 10.01 22.18 0.22 -3.31 16 13 C -0.21 -9.10 9.78 22.77 0.22 -8.88 16 14 C 0.06 3.23 5.55 -21.32 -0.12 3.11 16 15 C -0.50 -26.10 9.06 23.47 0.21 -25.89 16 16 H 0.08 4.07 7.87 -2.91 -0.02 4.04 16 17 C 0.03 1.40 5.25 85.25 0.45 1.85 16 18 N -0.83 -45.03 10.82 21.82 0.24 -44.80 16 19 Si 0.98 38.78 29.57 68.60 2.03 40.81 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.12 -6.24 8.21 23.01 0.19 -6.05 16 24 C -0.15 -3.94 8.62 22.35 0.19 -3.74 16 25 C -0.04 -0.93 9.75 22.51 0.22 -0.71 16 26 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.43 8.03 6.85 -92.71 -0.63 7.40 16 29 H 0.14 3.35 6.40 -2.91 -0.02 3.33 16 30 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 33 H 0.10 6.02 5.76 -2.91 -0.02 6.00 16 34 H 0.12 3.80 6.45 -2.91 -0.02 3.78 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -68.05 317.62 5.72 -62.32 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.52 Total: 23.38 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.25 Total: -25.15 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.02 Total: -75.56 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -68.05 5.72 -62.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042198097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.975 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds