Wall clock time and date at job start Tue Mar 31 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39676 * 120.11798 * 248.96886 * 3 2 1 5 5 C 1.37972 * 119.99410 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.23073 * 359.73289 * 5 4 3 7 7 C 1.38977 * 120.23093 * 0.54165 * 6 5 4 8 8 N 1.39872 * 119.99746 * 179.72766 * 7 6 5 9 9 C 1.34782 * 120.00180 * 214.36682 * 8 7 6 10 10 O 1.21554 * 119.99736 * 5.26241 * 9 8 7 11 11 C 1.47851 * 119.99911 * 185.26606 * 9 8 7 12 12 C 1.39926 * 120.02926 * 0.02562 * 11 9 8 13 13 C 1.38332 * 120.36051 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.40733 * 0.02562 * 13 12 11 15 15 C 1.40752 * 120.04501 * 359.97438 * 14 13 12 16 16 C 1.41444 * 120.17504 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99925 * 152.27090 * 16 15 14 18 18 C 1.39936 * 119.99888 * 332.26468 * 16 15 14 19 19 N 1.30825 * 119.99851 * 163.88951 * 18 16 15 20 20 Si 1.86794 * 120.00186 * 343.88955 * 18 16 15 21 21 H 1.48500 * 109.47125 * 95.11709 * 20 18 16 22 22 H 1.48503 * 109.47536 * 215.11821 * 20 18 16 23 23 H 1.48503 * 109.47473 * 335.11563 * 20 18 16 24 24 C 1.39008 * 120.02341 * 179.97438 * 11 9 8 25 25 C 1.38648 * 120.00345 * 359.45858 * 7 6 5 26 26 H 1.07998 * 120.00368 * 359.96123 * 4 3 2 27 27 H 1.08002 * 119.88387 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.88532 * 180.30029 * 6 5 4 29 29 H 0.97000 * 120.00488 * 34.36628 * 8 7 6 30 30 H 1.07997 * 119.82443 * 359.97438 * 12 11 9 31 31 H 1.07991 * 119.79408 * 179.97438 * 13 12 11 32 32 H 1.08003 * 119.97686 * 180.02562 * 14 13 12 33 33 H 0.96999 * 120.00302 * 180.02562 * 19 18 16 34 34 H 1.08000 * 120.20410 * 0.30171 * 24 11 9 35 35 H 1.08001 * 120.10894 * 180.25033 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.4345 1.1277 5 6 4.6484 0.4336 1.1251 6 6 5.3421 -0.0010 0.0110 7 6 4.6545 -0.4294 -1.1183 8 7 5.3613 -0.8627 -2.2449 9 6 4.8731 -0.6266 -3.4788 10 8 3.8694 0.0450 -3.6169 11 6 5.5583 -1.1846 -4.6641 12 6 6.7134 -1.9583 -4.5057 13 6 7.3597 -2.4841 -5.6100 14 6 6.8742 -2.2519 -6.8781 15 6 5.7136 -1.4760 -7.0572 16 6 5.2125 -1.2363 -8.3580 17 1 4.1577 -1.0576 -8.5059 18 6 6.0834 -1.2307 -9.4533 19 7 5.6072 -1.3261 -10.6681 20 14 7.9258 -1.0871 -9.1809 21 1 8.5305 -2.4432 -9.1614 22 1 8.5284 -0.2922 -10.2810 23 1 8.1833 -0.4116 -7.8837 24 6 5.0549 -0.9418 -5.9369 25 6 3.2681 -0.4325 -1.1263 26 1 2.7305 0.7710 2.0015 27 1 5.1884 0.7691 1.9982 28 1 6.4221 -0.0040 0.0168 29 1 6.2029 -1.3332 -2.1382 30 1 7.1025 -2.1460 -3.5159 31 1 8.2507 -3.0796 -5.4771 32 1 7.3841 -2.6662 -7.7353 33 1 6.2109 -1.3226 -11.4273 34 1 4.1660 -0.3418 -6.0643 35 1 2.7321 -0.7689 -2.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042210668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:09 Heat of formation + Delta-G solvation = 23.226291 kcal Electronic energy + Delta-G solvation = -20924.593925 eV Core-core repulsion = 17658.495046 eV Total energy + Delta-G solvation = -3266.098879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74376 -40.06483 -39.00685 -37.62943 -35.91816 -35.52371 -32.73912 -32.29027 -31.87297 -30.44894 -27.15524 -25.39944 -25.02506 -23.38285 -22.47965 -21.53504 -20.40115 -19.51088 -18.13504 -17.49054 -17.27008 -17.20558 -16.53561 -16.46267 -15.72903 -15.59430 -15.42668 -15.11538 -14.69277 -14.57496 -14.45607 -14.22669 -13.97211 -13.85706 -13.54755 -13.32333 -12.89260 -12.71832 -12.69024 -12.49923 -12.29734 -11.70981 -11.59248 -11.47072 -11.20587 -10.87067 -9.94488 -9.67747 -9.64465 -9.17423 -8.92708 -6.57999 -0.25133 0.00822 0.44181 0.74239 1.25060 1.42653 1.49121 1.50643 1.77108 1.96916 2.03686 2.11187 2.62428 2.81949 2.90888 3.44490 3.75705 3.95170 4.13941 4.18893 4.25295 4.38108 4.44093 4.53074 4.56011 4.84717 4.86072 4.90922 5.11400 5.22490 5.27871 5.38841 5.39938 5.45473 5.62330 5.69046 5.82621 5.91673 6.08050 6.27441 6.35034 6.44990 6.63452 6.71439 7.09219 8.16393 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027581 B = 0.003342 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.956100 B = 8374.975748 C = 9125.375723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.277 3.723 3 C -0.029 4.029 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.098 4.098 7 C 0.133 3.867 8 N -0.653 5.653 9 C 0.565 3.435 10 O -0.563 6.563 11 C -0.113 4.113 12 C -0.178 4.178 13 C -0.080 4.080 14 C -0.226 4.226 15 C 0.065 3.935 16 C -0.487 4.487 17 H 0.047 0.953 18 C 0.040 3.960 19 N -0.852 5.852 20 Si 0.974 3.026 21 H -0.247 1.247 22 H -0.282 1.282 23 H -0.244 1.244 24 C -0.167 4.167 25 C -0.099 4.099 26 H 0.159 0.841 27 H 0.182 0.818 28 H 0.170 0.830 29 H 0.431 0.569 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.295 0.705 34 H 0.087 0.913 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 0.042 23.667 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.038 4.038 3 C -0.033 4.033 4 C -0.096 4.096 5 C -0.104 4.104 6 C -0.118 4.118 7 C 0.039 3.961 8 N -0.301 5.301 9 C 0.356 3.644 10 O -0.443 6.443 11 C -0.116 4.116 12 C -0.198 4.198 13 C -0.098 4.098 14 C -0.246 4.246 15 C 0.062 3.938 16 C -0.517 4.517 17 H 0.065 0.935 18 C -0.174 4.174 19 N -0.478 5.478 20 Si 0.796 3.204 21 H -0.172 1.172 22 H -0.209 1.209 23 H -0.167 1.167 24 C -0.187 4.187 25 C -0.122 4.122 26 H 0.177 0.823 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.273 0.727 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.726 0.471 23.215 24.471 hybrid contribution 0.217 -0.105 -1.371 1.392 sum 7.944 0.366 21.844 23.247 Atomic orbital electron populations 1.81237 1.13438 1.10490 1.09151 1.26074 0.93087 0.92351 0.92262 1.15884 0.83152 1.07353 0.96898 1.21507 0.95341 0.96733 0.96059 1.21384 0.92677 0.97345 0.98977 1.21607 1.02296 0.96490 0.91445 1.17754 0.90261 0.99752 0.88360 1.43245 1.26189 1.57771 1.02855 1.18721 0.83365 0.78455 0.83899 1.90743 1.27137 1.39625 1.86745 1.19550 0.98405 1.02318 0.91331 1.21055 0.96158 1.02855 0.99687 1.21061 0.99404 0.98089 0.91250 1.21392 1.00499 1.04591 0.98094 1.17754 0.92593 0.90841 0.92562 1.19516 0.96033 1.44855 0.91269 0.93517 1.27011 1.06583 0.90160 0.93668 1.69714 1.40820 1.36543 1.00735 0.85390 0.75698 0.80088 0.79212 1.17151 1.20858 1.16716 1.21162 1.01994 1.03456 0.92121 1.21032 0.94089 0.99922 0.97125 0.82292 0.80026 0.81216 0.72725 0.82472 0.83150 0.87693 0.89406 0.89446 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.56 18.54 19.00 0.35 -14.21 16 2 C 0.28 7.28 15.33 88.33 1.35 8.63 16 3 C -0.03 -0.61 5.73 -21.38 -0.12 -0.73 16 4 C -0.08 -0.90 9.75 22.55 0.22 -0.68 16 5 C -0.09 -0.64 10.02 22.21 0.22 -0.42 16 6 C -0.10 -1.05 9.96 22.45 0.22 -0.83 16 7 C 0.13 2.71 6.25 38.13 0.24 2.95 16 8 N -0.65 -14.66 5.28 -306.19 -1.62 -16.28 16 9 C 0.56 19.43 7.50 86.79 0.65 20.08 16 10 O -0.56 -24.01 14.10 -3.88 -0.05 -24.06 16 11 C -0.11 -4.28 5.87 -20.14 -0.12 -4.40 16 12 C -0.18 -5.32 9.54 22.70 0.22 -5.10 16 13 C -0.08 -2.63 10.01 22.18 0.22 -2.41 16 14 C -0.23 -9.66 7.04 22.77 0.16 -9.50 16 15 C 0.06 3.26 5.18 -21.32 -0.11 3.15 16 16 C -0.49 -27.77 9.60 23.47 0.23 -27.55 16 17 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 18 C 0.04 2.12 5.44 85.25 0.46 2.59 16 19 N -0.85 -46.99 13.93 21.82 0.30 -46.68 16 20 Si 0.97 40.64 24.40 68.60 1.67 42.31 16 21 H -0.25 -9.29 6.70 99.48 0.67 -8.62 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.24 -10.10 6.67 99.48 0.66 -9.43 16 24 C -0.17 -7.99 9.34 23.01 0.21 -7.78 16 25 C -0.10 -2.52 8.35 22.67 0.19 -2.33 16 26 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 27 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 28 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 29 H 0.43 6.15 6.85 -92.71 -0.64 5.52 16 30 H 0.16 2.85 6.39 -2.91 -0.02 2.83 16 31 H 0.15 3.59 8.06 -2.92 -0.02 3.56 16 32 H 0.11 4.42 4.27 -2.91 -0.01 4.40 16 33 H 0.30 14.49 8.30 -92.71 -0.77 13.72 16 34 H 0.09 4.56 7.64 -2.91 -0.02 4.54 16 35 H 0.11 3.52 6.51 -2.91 -0.02 3.50 16 Total: -1.00 -74.59 311.86 5.35 -69.24 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.44 Total: 14.01 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.25 Total: -24.33 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -0.96 Total: -77.17 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.67 Total: 42.31 kcal Total: -74.59 5.35 -69.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042210668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.466 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds