Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48501 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47381 * 300.00118 * 3 2 1 6 6 H 1.48505 * 109.47004 * 60.00052 * 3 2 1 7 7 C 1.38796 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99873 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46850 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00353 * 5.00891 * 11 10 9 13 13 N 1.34775 * 120.00103 * 185.01086 * 11 10 9 14 14 C 1.46494 * 120.00467 * 184.98391 * 13 11 10 15 15 C 1.50701 * 109.47097 * 270.00270 * 14 13 11 16 16 C 1.38652 * 120.79343 * 89.99650 * 15 14 13 17 17 C 1.38202 * 119.16292 * 179.97438 * 16 15 14 18 18 N 1.31870 * 120.76365 * 0.25661 * 17 16 15 19 19 C 1.31868 * 121.72893 * 359.47402 * 18 17 16 20 20 C 1.38207 * 120.75895 * 0.52652 * 19 18 17 21 21 C 1.46504 * 119.99788 * 4.98330 * 13 11 10 22 22 C 1.52998 * 117.49852 * 182.63818 * 21 13 11 23 23 C 1.52999 * 117.50086 * 113.97658 * 21 13 11 24 24 H 0.96996 * 120.00283 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47214 * 60.00013 * 10 9 7 26 26 H 1.09002 * 109.46979 * 299.99296 * 10 9 7 27 27 H 1.09000 * 109.47424 * 149.99863 * 14 13 11 28 28 H 1.09000 * 109.47262 * 29.99943 * 14 13 11 29 29 H 1.07993 * 120.41483 * 0.02562 * 16 15 14 30 30 H 1.08001 * 119.61649 * 179.97438 * 17 16 15 31 31 H 1.07996 * 119.62130 * 180.26885 * 19 18 17 32 32 H 1.08005 * 120.41300 * 179.72135 * 20 19 18 33 33 H 1.08994 * 115.55285 * 328.30774 * 21 13 11 34 34 H 1.09004 * 117.50302 * 359.97438 * 22 21 13 35 35 H 1.09001 * 117.50408 * 145.02342 * 22 21 13 36 36 H 1.08996 * 117.50568 * 214.98440 * 23 21 13 37 37 H 1.09003 * 117.49526 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9876 -5.3026 0.0012 12 8 0.7951 -5.5038 -0.0901 13 7 2.8402 -6.3414 0.1032 14 6 2.3393 -7.7137 -0.0057 15 6 1.9570 -8.2190 1.3616 16 6 0.6717 -8.0411 1.8503 17 6 0.3577 -8.5185 3.1087 18 7 1.2649 -9.1319 3.8432 19 6 2.4952 -9.3233 3.4089 20 6 2.8821 -8.8733 2.1607 21 6 4.2681 -6.0982 0.3231 22 6 5.1934 -7.3158 0.3685 23 6 4.8656 -6.5548 1.6556 24 1 -0.4850 0.8400 0.0004 25 1 3.1246 -3.7312 0.8905 26 1 3.1246 -3.7313 -0.8895 27 1 3.1170 -8.3523 -0.4247 28 1 1.4653 -7.7309 -0.6568 29 1 -0.0747 -7.5367 1.2548 30 1 -0.6412 -8.3836 3.4967 31 1 3.2099 -9.8338 4.0374 32 1 3.8925 -9.0290 1.8123 33 1 4.6624 -5.1827 -0.1177 34 1 4.7397 -8.2980 0.2351 35 1 6.1966 -7.2013 -0.0421 36 1 5.6531 -5.9400 2.0912 37 1 4.1961 -7.0359 2.3687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042390989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = 35.606211 kcal Electronic energy + Delta-G solvation = -20633.796380 eV Core-core repulsion = 17503.678286 eV Total energy + Delta-G solvation = -3130.118094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67664 -39.39585 -37.38107 -34.18345 -32.49080 -32.43780 -31.24725 -29.63969 -26.57896 -25.45808 -23.57309 -22.80425 -22.68057 -21.99002 -19.19127 -17.91691 -17.11462 -16.86366 -16.36783 -16.01869 -15.58084 -15.06839 -14.82529 -14.69736 -14.11158 -14.02406 -13.75260 -13.51868 -13.21125 -12.74874 -12.56613 -12.26038 -11.94282 -11.79054 -11.27751 -11.22285 -11.08829 -11.04070 -10.80212 -10.76379 -9.91001 -9.81378 -9.60662 -9.34919 -9.18511 -9.09404 -8.52629 -8.26191 -6.52683 -6.24068 -3.94694 1.03949 1.11557 2.79672 2.89983 3.19986 3.22815 3.29104 3.51583 3.63306 3.80036 4.17881 4.38244 4.46164 4.50175 4.59404 4.67085 4.75719 4.89229 4.96393 5.09439 5.11557 5.21884 5.37118 5.46211 5.50434 5.60456 5.70092 5.75519 5.77905 5.85022 5.89054 5.92615 6.10282 6.26966 6.46031 6.63858 7.41155 7.57768 7.89126 8.33120 8.43238 9.21580 10.83469 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.003976 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.264900 B = 7039.952036 C = 7616.490436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.541 3.459 12 O -0.509 6.509 13 N -0.589 5.589 14 C 0.150 3.850 15 C -0.060 4.060 16 C -0.143 4.143 17 C 0.096 3.904 18 N -0.486 5.486 19 C 0.089 3.911 20 C -0.167 4.167 21 C 0.077 3.923 22 C -0.188 4.188 23 C -0.199 4.199 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.111 -18.076 1.909 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.329 3.671 12 O -0.382 6.382 13 N -0.322 5.322 14 C 0.027 3.973 15 C -0.070 4.070 16 C -0.163 4.163 17 C -0.061 4.061 18 N -0.195 5.195 19 C -0.067 4.067 20 C -0.187 4.187 21 C -0.028 4.028 22 C -0.225 4.225 23 C -0.237 4.237 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.162 0.838 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.910 -18.541 2.652 20.332 hybrid contribution 2.327 1.623 -0.732 2.930 sum 10.237 -16.917 1.920 19.867 Atomic orbital electron populations 1.70024 1.05952 1.27372 1.46923 1.24985 0.95017 0.99020 0.94503 0.86124 0.79591 0.81895 0.77931 1.19612 1.20542 1.20543 1.22887 0.94903 0.91564 1.58890 0.90898 1.85365 1.04942 0.96440 1.96712 1.23547 1.06553 0.95028 1.04826 1.20336 0.85943 0.86144 0.74646 1.90680 1.15040 1.85091 1.47405 1.47442 1.06346 1.05015 1.73430 1.20372 1.01081 0.82976 0.92842 1.20709 0.93767 0.95326 0.97182 1.22308 0.97434 0.99068 0.97500 1.22811 0.98832 0.93508 0.90919 1.67653 1.02329 1.13690 1.35816 1.22690 0.93206 0.97041 0.93811 1.22113 1.00346 1.00231 0.96049 1.21765 0.80575 0.99413 1.01087 1.23394 1.00500 0.96454 1.02196 1.23633 1.03934 1.04230 0.91930 0.92220 0.89305 0.89101 0.89193 0.88371 0.83804 0.82666 0.83021 0.84824 0.84894 0.88202 0.87664 0.87991 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -15.07 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.58 -107.50 -2.21 -3.85 16 10 C -0.15 -2.98 4.68 36.01 0.17 -2.81 16 11 C 0.54 9.90 7.67 -10.99 -0.08 9.81 16 12 O -0.51 -10.86 14.87 5.56 0.08 -10.78 16 13 N -0.59 -7.99 2.78 -167.48 -0.47 -8.45 16 14 C 0.15 1.72 5.09 -5.20 -0.03 1.70 16 15 C -0.06 -0.72 5.29 -104.32 -0.55 -1.27 16 16 C -0.14 -1.89 9.73 -39.44 -0.38 -2.27 16 17 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 18 N -0.49 -6.32 10.36 -13.25 -0.14 -6.45 16 19 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 20 C -0.17 -1.67 7.15 -39.44 -0.28 -1.96 16 21 C 0.08 0.83 5.78 -67.93 -0.39 0.44 16 22 C -0.19 -1.43 9.24 -26.69 -0.25 -1.68 16 23 C -0.20 -1.87 9.75 -26.69 -0.26 -2.13 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.09 1.68 7.88 -51.92 -0.41 1.27 16 26 H 0.09 1.68 7.96 -51.91 -0.41 1.27 16 27 H 0.09 0.77 5.96 -51.93 -0.31 0.46 16 28 H 0.10 1.23 7.46 -51.93 -0.39 0.84 16 29 H 0.14 2.04 7.51 -52.49 -0.39 1.65 16 30 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.02 5.60 -52.48 -0.29 0.72 16 33 H 0.13 1.41 7.13 -51.93 -0.37 1.04 16 34 H 0.10 0.68 4.66 -51.93 -0.24 0.44 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.09 5.36 -51.93 -0.28 0.81 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -33.91 322.45 -8.75 -42.66 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.33 Total: 2.20 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.25 Total: -11.17 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.13 Total: -40.15 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.91 -8.75 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042390989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.263 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds