Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99984 * 2 1 4 4 H 1.48495 * 109.47262 * 269.99975 * 3 2 1 5 5 H 1.48507 * 109.46802 * 29.99976 * 3 2 1 6 6 H 1.48498 * 109.47427 * 149.99535 * 3 2 1 7 7 C 1.38797 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99967 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00139 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46919 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00404 * 4.65136 * 11 10 9 13 13 N 1.34776 * 119.99793 * 184.65944 * 11 10 9 14 14 C 1.46500 * 120.00128 * 8.65167 * 13 11 10 15 15 C 1.50698 * 109.47209 * 95.84659 * 14 13 11 16 16 C 1.38677 * 120.41415 * 84.14162 * 15 14 13 17 17 C 1.38630 * 118.41855 * 179.72922 * 16 15 14 18 18 C 1.38232 * 119.16185 * 359.97438 * 17 16 15 19 19 N 1.31859 * 120.76195 * 0.02562 * 18 17 16 20 20 C 1.31886 * 121.72312 * 0.02562 * 19 18 17 21 21 C 1.46503 * 120.00284 * 188.65426 * 13 11 10 22 22 C 1.53007 * 117.49411 * 15.71122 * 21 13 11 23 23 C 1.52997 * 117.49761 * 307.05434 * 21 13 11 24 24 H 0.96994 * 120.00184 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46975 * 60.00514 * 10 9 7 26 26 H 1.08995 * 109.46966 * 300.00660 * 10 9 7 27 27 H 1.09004 * 109.47069 * 335.84734 * 14 13 11 28 28 H 1.09001 * 109.47330 * 215.84922 * 14 13 11 29 29 H 1.07993 * 120.79141 * 359.69515 * 16 15 14 30 30 H 1.07995 * 120.42306 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.61817 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.61098 * 180.02562 * 20 19 18 33 33 H 1.08993 * 115.55132 * 161.37813 * 21 13 11 34 34 H 1.08995 * 117.50044 * 0.02562 * 22 21 13 35 35 H 1.08994 * 117.49831 * 145.02389 * 22 21 13 36 36 H 1.09000 * 117.50070 * 214.98006 * 23 21 13 37 37 H 1.09008 * 117.49905 * 359.96874 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7944 -5.5036 -0.0828 13 7 2.8406 -6.3417 0.0963 14 6 4.2563 -6.1029 0.3882 15 6 4.4973 -6.2588 1.8676 16 6 4.7193 -7.5138 2.4143 17 6 4.9422 -7.6087 3.7793 18 6 4.9362 -6.4575 4.5445 19 7 4.7215 -5.2805 3.9903 20 6 4.5050 -5.1527 2.6956 21 6 2.3525 -7.7100 -0.0930 22 6 0.9808 -7.8865 -0.7475 23 6 1.1556 -8.1559 0.7492 24 1 -0.4850 0.8400 0.0004 25 1 3.1252 -3.7310 0.8908 26 1 3.1239 -3.7317 -0.8891 27 1 4.5252 -5.0923 0.0808 28 1 4.8663 -6.8230 -0.1572 29 1 4.7181 -8.3961 1.7917 30 1 5.1190 -8.5699 4.2390 31 1 5.1086 -6.5230 5.6086 32 1 4.3334 -4.1718 2.2776 33 1 3.1163 -8.4549 -0.3163 34 1 0.4418 -6.9846 -1.0376 35 1 0.8420 -8.7477 -1.4009 36 1 1.1317 -9.1943 1.0798 37 1 0.7316 -7.4313 1.4445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042474339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = 42.856173 kcal Electronic energy + Delta-G solvation = -20737.427629 eV Core-core repulsion = 17607.623917 eV Total energy + Delta-G solvation = -3129.803712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60428 -39.69666 -36.24778 -35.07853 -32.46758 -32.42979 -31.33590 -29.10341 -26.45583 -25.50072 -23.74886 -22.73856 -22.25383 -22.21408 -19.06955 -17.69841 -17.26711 -16.70920 -16.65742 -15.94289 -15.68117 -14.89882 -14.80534 -14.39225 -14.04757 -13.93312 -13.47083 -13.31446 -13.17615 -12.88009 -12.57951 -12.53210 -12.23865 -11.79723 -11.20638 -11.06466 -11.02057 -10.91478 -10.75852 -10.32012 -9.95433 -9.81766 -9.55429 -9.22748 -9.08987 -9.05709 -8.31558 -8.24845 -6.51362 -6.22121 -3.93066 0.92843 1.15892 2.81823 2.90764 3.22811 3.25107 3.30551 3.51239 3.77052 4.00001 4.19693 4.33264 4.53060 4.64356 4.74848 4.78323 4.84079 4.93316 5.10534 5.13460 5.16250 5.20002 5.35795 5.48885 5.53260 5.61408 5.65168 5.81966 5.85260 5.93474 6.01006 6.12374 6.17104 6.48060 6.57500 6.84019 7.45174 7.59194 7.89551 8.34517 8.48992 9.23478 10.85309 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.004973 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.836860 B = 5629.226035 C = 6993.033588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.536 3.464 12 O -0.503 6.503 13 N -0.590 5.590 14 C 0.157 3.843 15 C -0.158 4.158 16 C -0.057 4.057 17 C -0.178 4.178 18 C 0.099 3.901 19 N -0.481 5.481 20 C 0.117 3.883 21 C 0.072 3.928 22 C -0.190 4.190 23 C -0.187 4.187 24 H 0.268 0.732 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.699 -17.783 2.897 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.306 4.306 11 C 0.325 3.675 12 O -0.377 6.377 13 N -0.323 5.323 14 C 0.033 3.967 15 C -0.161 4.161 16 C -0.084 4.084 17 C -0.198 4.198 18 C -0.059 4.059 19 N -0.189 5.189 20 C -0.040 4.040 21 C -0.032 4.032 22 C -0.227 4.227 23 C -0.225 4.225 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.763 -17.198 3.363 20.060 hybrid contribution 2.031 0.384 -0.371 2.100 sum 11.794 -16.814 2.992 20.755 Atomic orbital electron populations 1.70011 1.05967 1.27486 1.46802 1.24976 0.95003 0.99009 0.94462 0.86182 0.79487 0.81599 0.78343 1.20271 1.20749 1.19615 1.22845 0.94877 0.91561 1.59063 0.90903 1.85409 1.04690 0.96322 1.96675 1.23673 1.06773 0.95490 1.04642 1.20391 0.86089 0.86079 0.74941 1.90560 1.15344 1.84690 1.47089 1.47379 1.08312 1.04962 1.71656 1.20383 0.82024 1.04061 0.90237 1.21296 1.02106 0.94651 0.98083 1.21414 0.94793 0.97021 0.95129 1.22114 1.02703 1.00225 0.94736 1.22826 0.94825 0.87818 1.00405 1.67758 1.11090 1.27243 1.12830 1.22891 0.93347 0.98917 0.88831 1.21578 0.91310 0.84232 1.06123 1.23795 0.98656 1.04963 0.95290 1.23228 1.02676 1.01384 0.95256 0.92171 0.89581 0.88954 0.88296 0.89353 0.85103 0.84921 0.82897 0.82503 0.85981 0.84511 0.89481 0.89195 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 10 C -0.16 -3.06 4.56 36.00 0.16 -2.89 16 11 C 0.54 9.82 7.46 -10.99 -0.08 9.74 16 12 O -0.50 -10.82 11.64 5.56 0.06 -10.76 16 13 N -0.59 -8.06 2.82 -167.47 -0.47 -8.53 16 14 C 0.16 1.65 5.49 -5.19 -0.03 1.62 16 15 C -0.16 -1.78 5.47 -104.48 -0.57 -2.35 16 16 C -0.06 -0.54 9.88 -39.27 -0.39 -0.93 16 17 C -0.18 -1.62 10.11 -39.44 -0.40 -2.02 16 18 C 0.10 1.08 11.18 -17.54 -0.20 0.88 16 19 N -0.48 -6.81 10.36 -13.25 -0.14 -6.94 16 20 C 0.12 1.59 10.65 -17.55 -0.19 1.41 16 21 C 0.07 0.86 6.62 -67.93 -0.45 0.41 16 22 C -0.19 -2.56 9.62 -26.69 -0.26 -2.82 16 23 C -0.19 -2.42 9.88 -26.69 -0.26 -2.69 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.09 1.56 5.59 -51.92 -0.29 1.27 16 26 H 0.09 1.68 7.96 -51.92 -0.41 1.26 16 27 H 0.10 1.03 6.16 -51.93 -0.32 0.71 16 28 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.16 2.18 6.25 -52.49 -0.33 1.85 16 33 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.14 2.37 5.27 -51.99 -0.27 2.10 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.59 7.57 -51.92 -0.39 1.20 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -34.28 327.03 -9.10 -43.38 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.52 Total: 3.02 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.46 Total: -12.35 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.12 Total: -40.79 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.28 -9.10 -43.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042474339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.238 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds