Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 119.99767 * 2 1 4 4 C 1.50698 * 119.99635 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46998 * 95.00646 * 4 2 1 6 6 C 1.34771 * 119.99941 * 179.97438 * 5 4 2 7 7 S 1.71198 * 120.00372 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99955 * 179.97438 * 6 5 4 9 9 C 1.39887 * 120.00303 * 176.39263 * 8 6 5 10 10 C 1.38968 * 120.04048 * 224.18120 * 9 8 6 11 11 C 1.38151 * 120.06980 * 180.02562 * 10 9 8 12 12 C 1.38171 * 120.13665 * 359.72959 * 11 10 9 13 13 C 1.38911 * 120.07437 * 0.54583 * 12 11 10 14 14 O 1.35752 * 120.03624 * 179.72422 * 13 12 11 15 15 C 1.34835 * 116.99768 * 353.15338 * 14 13 12 16 16 H 1.07997 * 120.00260 * 4.69870 * 15 14 13 17 17 C 1.38651 * 119.99781 * 184.70402 * 15 14 13 18 18 N 1.31557 * 120.00229 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47111 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46854 * 239.99770 * 19 17 15 23 23 C 1.38722 * 120.03341 * 44.19985 * 9 8 6 24 24 H 1.08004 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00046 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47015 * 239.99640 * 3 2 1 27 27 H 1.09003 * 109.47484 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46579 * 119.99764 * 3 2 1 29 29 H 1.08995 * 109.47660 * 335.00519 * 4 2 1 30 30 H 1.09001 * 109.46647 * 214.99946 * 4 2 1 31 31 H 0.97007 * 120.00027 * 359.97438 * 5 4 2 32 32 H 0.97004 * 120.00208 * 356.38796 * 8 6 5 33 33 H 1.08005 * 119.96556 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.93606 * 179.97438 * 11 10 9 35 35 H 1.08009 * 119.96626 * 180.27675 * 12 11 10 36 36 H 0.96993 * 120.00200 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.07292 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 6 3.0935 -2.8050 -1.6200 7 16 3.5526 -3.8241 -0.3233 8 7 3.4137 -3.1395 -2.8858 9 6 4.1857 -4.2793 -3.1342 10 6 5.2296 -4.2265 -4.0500 11 6 5.9921 -5.3519 -4.2962 12 6 5.7232 -6.5316 -3.6290 13 6 4.6776 -6.5925 -2.7165 14 8 4.4106 -7.7534 -2.0655 15 6 5.1023 -8.8446 -2.4514 16 1 5.8831 -8.7550 -3.1922 17 6 4.8110 -10.0818 -1.8974 18 7 3.8601 -10.1909 -0.9948 19 14 5.7697 -11.5934 -2.4314 20 1 6.7778 -11.2057 -3.4506 21 1 6.4565 -12.1851 -1.2553 22 1 4.8365 -12.5913 -3.0135 23 6 3.9099 -5.4637 -2.4668 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.6902 1.3628 -0.8900 27 1 1.3552 2.1336 -0.0005 28 1 2.6901 1.3628 0.8901 29 1 1.4386 -2.0853 0.4351 30 1 2.9742 -1.1986 0.5900 31 1 2.1523 -1.0908 -2.1100 32 1 3.1087 -2.5899 -3.6247 33 1 5.4445 -3.3049 -4.5706 34 1 6.8026 -5.3085 -5.0087 35 1 6.3240 -7.4086 -3.8202 36 1 3.6566 -11.0563 -0.6069 37 1 3.0988 -5.5076 -1.7551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044196788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 45.902106 kcal Electronic energy + Delta-G solvation = -19930.137006 eV Core-core repulsion = 16800.465376 eV Total energy + Delta-G solvation = -3129.671630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75385 -38.59813 -37.25184 -35.66450 -33.73753 -32.17737 -29.53160 -28.72662 -27.74806 -26.47749 -25.20771 -23.92280 -21.69198 -21.48102 -19.50383 -18.59453 -17.96532 -17.16348 -16.40303 -15.64370 -15.38015 -15.05384 -14.96707 -14.60621 -14.39105 -14.11204 -13.67946 -13.50349 -13.42325 -12.96124 -12.56631 -12.17591 -12.05109 -11.62221 -11.56642 -11.26683 -11.06802 -10.87913 -10.76483 -10.71065 -10.38486 -9.73009 -9.58165 -9.27764 -8.76185 -8.06026 -7.58467 -7.16873 -6.54088 -6.34322 -3.92048 1.33078 1.49733 2.18035 2.34433 2.41749 2.84929 3.19119 3.20000 3.25817 3.59190 4.05228 4.26180 4.50170 4.62176 5.03465 5.18780 5.22278 5.29994 5.34924 5.41821 5.52066 5.55070 5.63227 5.78827 5.92496 6.10215 6.18181 6.24660 6.33764 6.42140 6.48512 6.88411 7.05130 7.07434 7.14605 7.38947 7.45707 7.56604 7.87793 8.10060 9.10327 9.83514 10.83524 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.003387 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.792392 B = 8263.758360 C = 9068.639828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.154 4.154 3 C -0.119 4.119 4 C 0.162 3.838 5 N -0.686 5.686 6 C 0.547 3.453 7 S -0.599 6.599 8 N -0.622 5.622 9 C 0.146 3.854 10 C -0.216 4.216 11 C -0.071 4.071 12 C -0.231 4.231 13 C 0.159 3.841 14 O -0.170 6.170 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.858 5.858 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.131 4.131 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.393 0.607 32 H 0.400 0.600 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.269 0.731 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 20.712 -4.040 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.175 4.175 4 C 0.039 3.961 5 N -0.316 5.316 6 C 0.190 3.810 7 S -0.471 6.471 8 N -0.246 5.246 9 C 0.054 3.946 10 C -0.237 4.237 11 C -0.090 4.090 12 C -0.251 4.251 13 C 0.104 3.896 14 O -0.073 6.073 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.493 5.493 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.153 4.153 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.229 0.771 32 H 0.237 0.763 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.079 0.921 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.442 19.774 -2.683 20.443 hybrid contribution 0.048 0.405 -1.620 1.671 sum -4.394 20.179 -4.303 21.095 Atomic orbital electron populations 1.24004 0.95119 1.02601 0.98026 1.21874 0.95550 0.95440 1.02613 1.20881 1.00282 0.93836 1.02546 1.20632 1.00917 0.93641 0.80937 1.44974 1.55330 1.20674 1.10628 1.22491 0.82116 0.86213 0.90154 1.93783 1.69483 1.51373 1.32457 1.42140 1.51095 1.26786 1.04623 1.16842 0.93474 0.83826 1.00451 1.20223 0.98956 0.98984 1.05541 1.20421 0.97937 0.92172 0.98491 1.21231 1.01922 0.99217 1.02694 1.19036 0.92446 0.87753 0.90406 1.84011 1.57947 1.13531 1.51846 1.21382 1.16696 0.83913 1.24565 0.89038 1.25286 0.96953 0.98188 0.96173 1.70068 1.28597 1.25161 1.25493 0.85665 0.78932 0.80323 0.78584 1.19126 1.20192 1.20248 1.20426 1.03262 0.89176 1.02454 0.87828 0.87827 0.91718 0.91768 0.91058 0.88931 0.88964 0.77065 0.76294 0.87717 0.87049 0.85429 0.92140 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 13.90 29.01 0.40 -0.61 16 2 C -0.15 -1.09 5.42 -101.07 -0.55 -1.64 16 3 C -0.12 -0.68 10.12 36.00 0.36 -0.32 16 4 C 0.16 1.59 5.29 -5.19 -0.03 1.56 16 5 N -0.69 -6.92 5.55 -63.21 -0.35 -7.27 16 6 C 0.55 8.10 7.84 -86.92 -0.68 7.42 16 7 S -0.60 -12.50 24.76 -107.50 -2.66 -15.16 16 8 N -0.62 -8.66 5.32 -11.42 -0.06 -8.72 16 9 C 0.15 2.68 5.96 -83.73 -0.50 2.19 16 10 C -0.22 -3.67 9.97 -39.34 -0.39 -4.06 16 11 C -0.07 -1.30 10.03 -39.64 -0.40 -1.69 16 12 C -0.23 -5.09 9.16 -39.36 -0.36 -5.46 16 13 C 0.16 4.00 6.64 -39.13 -0.26 3.74 16 14 O -0.17 -5.07 9.76 0.03 0.00 -5.07 16 15 C -0.39 -11.16 9.49 30.88 0.29 -10.87 16 16 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -26.01 13.67 55.48 0.76 -25.25 16 19 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.13 -2.97 7.81 -39.20 -0.31 -3.28 16 24 H 0.10 0.51 7.83 -52.48 -0.41 0.10 16 25 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.30 7.78 -51.93 -0.40 -0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.05 7.84 -51.93 -0.41 0.64 16 30 H 0.09 1.03 7.99 -51.93 -0.41 0.61 16 31 H 0.39 2.70 8.48 -40.82 -0.35 2.35 16 32 H 0.40 3.82 8.84 -40.82 -0.36 3.45 16 33 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.80 5.65 -52.48 -0.30 2.51 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.15 3.55 6.00 -41.91 -0.25 3.29 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -35.28 331.39 -9.26 -44.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.41 Total: 7.97 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.51 Total: -12.02 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.35 Total: -41.24 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -12.50 SS G_CDS: -2.66 Total: -15.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.28 -9.26 -44.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044196788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.441 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds